Finn Drabløs

About

Professor in bioinformatics and Group Leader for Bioinformatics & Gene Regulation (BiGR): http://bigr.medisin.ntnu.no

NTNU Node Leader and Deputy Head for ELIXIR Norway: https://www.elixir-europe.org/about/elixir-norway

PubMed publications: http://www.ncbi.nlm.nih.gov/pubmed?term=drablos+f

SCOPUS Author ID: 8908254000

Background

Trained in organic chemistry at University of Bergen (MSc 1983), including using computer-based expert system (SECS) and computational methods for strategies in organic synthesis. The computational aspects were basis for a PhD in chemometrics, also at University of Bergen. I was then recruited as a research scientist at SINTEF in Trondheim, where I did contract research on molecular modelling, in particular for pharmaceutical industry. This was gradually expanded into various methods in bioinformatics, in particular for sequence analysis and protein structure prediction. The SINTEF unit was closed down in 2002, and I was offered a position at NTNU as a research scientist. I got a qualification fellowship in 2004, and became full professor in bioinformatics in 2007. Since 2002 I have been strongly involved in building up bioinformatics as a research area at NTNU, initially as leader of Programme for Bioinformatics, later also as NTNU node leader for the FUGE technology platform and the ELIXIR Norway infrastructure for bioinformatics.

Research

Focus of my research for the last 10 years has been on gene regulation, initially based on transcription factors, promoters and enhancers, but increasingly also including epigenetics, in particular histone modifications. The research group has established rigorous methods for benchmarking methods for motif discovery (BMC Bioinformatics 2007, 2008) and ChIP-seq data analysis (Nucleic Acids Res 2011). We have also developed novel methods for motif discovery (BMC Bioinformatics 2008), a tool for detailed analysis of regulatory regions (Bioinformatics 2010; BMC Bioinformatics 2013), and a tool for identification of ChIP-seq peaks (BMC Bioinformatics 2012). This has provided a basis for detailed analysis of gene regulation in several systems, both at the level of transcription factors (J Biol Chem 2010; BMC Genomics 2012; BMC Med 2013; PLoS One 2015), and with respect to histone modifications (PLoS One 2011; BMC Biology 2011; BMC Genomics 2014). This research is now done in collaboration with the international FANTOM consortium, leading to important papers where our main contribution has been on epigenetic regulation (BMC Genomics 2014; Nature 2014; Science 2015; Database 2015; NAR 2017).

For some years we have also built up a cancer-related research activity, in particular on colorectal cancer (CRC) and prostate cancer (PCa). For colorectal cancer we have mainly worked on identification of a specific mutation leading to increased risk for CRC (Familial Cancer 2015), whereas the research on prostate cancer has focused on identification of reliable gene sets for PCa prognosis (BMC Med Genomics 2014; PLoS ONE 2016; Oncotarget 2017).

Through the service and infrastructure activities the group has also been involved in several other projects, like research on prokaryotes, including oil well metagenomics, biodegradation, pathogenic bacteria, and characterization of novel bacterial genes.

Publications

2023

Marakulina, Daria; Vorontsov, Ilya E.; Kulakovskiy, Ivan V.; Lennartsson, Andreas; Drabløs, Finn Sverre; Medvedeva, Yulia A.. (2023) EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Research (NAR)
Academic article
Rocque, Mariève; Leipart, Vilde; Singh, Ashish Kumar; Mur, Pilar; Olsen, Maren Fridtjofsen; Engebretsen, Lars Fredri. (2023) Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk. Molecular Genetics and Genomics
Academic article
Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; Xavier, Alexandre; Scott, Rodney J.; Drabløs, Finn Sverre; Sjursen, Wenche. (2023) Detection of germline variants with pathogenic potential in 48 patients with familial colorectal cancer by using whole exome sequencing. BMC Medical Genomics
Academic article

2022

Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A.; Severin, Jessica. (2022) Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications
Errata
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2022) FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer. PLOS ONE
Academic article
Rye, Morten Beck; Krossa, Sebastian; Hall, Martina; van Mourik, Casper; Bathen, Tone Frost; Drabløs, Finn. (2022) The genes controlling normal function of citrate and spermine secretion are lost in aggressive prostate cancer and prostate model systems. iScience
Academic article
Leipart, Vilde; Enger, Øyvind; Turcu, Diana Cornelia; Dobrovolska, Olena; Drabløs, Finn; Halskau, Øyvind. (2022) Resolving the zinc binding capacity of honey bee vitellogenin and locating its putative binding sites. Insect molecular biology (Print)
Academic article

2021

Singh, Ashish Kumar; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Vold, Trine; Drabløs, Finn; Sjursen, Wenche. (2021) Detecting copy number variation in next generation sequencing data from diagnostic gene panels. BMC Medical Genomics
Academic article
Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila. (2021) Recommendations for the FAIRification of genomic track metadata. F1000 Research
Academic article
van Mourik, Casper; Ehsani, Rezvan; Drabløs, Finn. (2021) GAPGOM—an R package for gene annotation prediction using GO metrics. BMC Research Notes
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2021) FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks. Genomics, proteomics & bioinformatics
Academic article

2020

Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; McPhillips, Mary; Lavik, Liss Ane; Xavier, Alexandre; Drabløs, Finn. (2020) Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PLOS ONE
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Robust Distance Measures for kNN Classification of Cancer Data. Cancer Informatics
Academic article
Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez. (2020) LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances
Academic article
Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2020) DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Enhanced identification of significant regulators of gene expression. BMC Bioinformatics
Academic article

2019

Ehsani, Rezvan; Drabløs, Finn. (2019) Predicting Cancer Association of LncRNAs by Co-Expression. IEEE Xplore Digital Library
Academic article
Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2019) DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics
Academic literature review
Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry. (2019) MACPET: model-based analysis for ChIA-PET. Biostatistics
Academic article

2018

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2018) Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer
Academic article
Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi. (2018) Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2018) Measures of co-expression for improved function prediction of long non-coding RNAs. BMC Bioinformatics
Academic article
Ribicic, Deni; Netzer, Roman; Hazen, Terry C.; Techtmann, Stephen M.; Drabløs, Finn; Brakstad, Odd Gunnar. (2018) Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater. Marine Pollution Bulletin
Academic article
Ås, Christina Gabrielsen; Drabløs, Finn; Haugum, Kjersti; Afset, Jan Egil. (2018) Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli. Frontiers in Microbiology
Academic article
Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn. (2018) The Earth, Life and Genomic Uracil. World Scientific
Chapter

2017

Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica. (2017) Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research (NAR)
Academic article
Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics
Academic article
Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost. (2017) SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports
Academic article
Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars. (2017) GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience
Academic article

2016

Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Gene regulation in the immediate-early response process. Advances in Biological Regulation
Academic literature review
Ehsani, Rezvan; Drabløs, Finn Sverre. (2016) TopoICSim: A new semantic similarity measure based on gene ontology. BMC Bioinformatics
Academic article
Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.. (2016) A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget
Academic article
Lewin, Anna; Strand, Trine Aakvik; Haugen, Tone; Klinkenberg, Geir; Kotlar, Hans Kristian; Valla, Svein. (2016) Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome. Advances in Enzyme Research
Academic article
Ehsani, Rezvan; Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function. BMC Bioinformatics
Academic article
Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line. (2016) Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE
Academic article
Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck. (2016) A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE
Academic article

2015

Hurst, Laurence D.; Ghanbarian, Avazeh T.; Forrest, Alistair R.R.; Huminiecki, Lukasz; Haberle, Vanja; Drabløs, Finn Sverre. (2015) The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome. PLoS Biology
Academic article
Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Genome sequences of 11 Shiga toxin-producing Escherichia coli strains. Microbiology Resource Announcements (MRA)
Short communication
Mjelle, Robin; Hegre, Siv Anita; Aas, Per Arne; Slupphaug, Geir; Drabløs, Finn; Sætrom, Pål. (2015) Cell cycle regulation of human DNA repair and chromatin remodeling genes. DNA Repair
Academic article
Baglo, Yan; Qian, Peng; Hagen, Lars; Berg, Kristian; Høgset, Anders; Drabløs, Finn. (2015) Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model. Photodiagnosis and Photodynamic Therapy
Academic article
Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2015) A property-based analysis of human transcription factors. BMC Research Notes
Academic article
Medvedeva, Yulia; Lennartsson, Andreas; Ehsani, Rezvan; Kulakovskiy, Ivan; Vorontsov, Ilya E; Panahandeh, Pouda. (2015) EpiFactors: A comprehensive database of human epigenetic factors and complexes. Database: The Journal of Biological Databases and Curation
Academic article
Arner, Erik; Daub, Carsten O; Vitting-Seerup, Kristoffer; Andersson, Robin; Lilje, Berit; Drabløs, Finn. (2015) Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science
Academic article
Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind. (2015) c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLOS ONE
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer
Abstract

2014

Razick, Sabry; Mocnik, Rok; Thomas, Laurent; Ryeng, Einar; Drabløs, Finn; Sætrom, Pål. (2014) The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences. Database: The Journal of Biological Databases and Curation
Academic article
Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer. BMC Medical Genomics
Academic article
Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE
Academic article
Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics
Academic article
Baglo, Yan; Hagen, Lars; Høgset, Anders; Drabløs, Finn; Otterlei, Marit; Gederaas, Odrun Arna. (2014) Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization. BioMed Research International
Academic article
Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A. (2014) Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics
Academic article
Forest, Alistair R.R.; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; de Hoon, Michiel; Haberle, Vanja. (2014) A promoter-level mammalian expression atlas. Nature
Academic article
Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology
Academic article

2013

Klepper, Kjetil; Drabløs, Finn. (2013) Integrated approaches for motif discovery in genomic regions. Doktoravhandlinger ved NTNU (143)
Doctoral dissertation
Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. Pregnancy Hypertension
Abstract
Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC. (2013) Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Medicine
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars. (2013) The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research (NAR)
Academic article
Diaz, Javier Pena; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Research (NAR)
Academic article
Klepper, Kjetil; Drabløs, Finn. (2013) MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis. BMC Bioinformatics
Academic article

2012

Håndstad, Tony; Rye, Morten Beck; Mocnik, Rok; Drabløs, Finn; Sætrom, Pål. (2012) Cell-type specificity of ChIP-predicted transcription factor binding sites. BMC Genomics
Academic article
Kornacker, K; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. BMC Bioinformatics
Academic article

2011

Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports
Academic article
Håndstad, Tony; Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål. (2011) A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites. PLOS ONE
Academic article
Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements. BMC Biology
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit. (2011) The differential disease regulome. BMC Genomics
Academic article
Rye, Morten Beck; Sætrom, Pål; Drabløs, Finn. (2011) A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs. Nucleic Acids Research (NAR)
Academic article

2010

Nguyen, Thuy Tranh; Johnsen, Ingvild Bjellmo; Knetter, CF; Drabløs, Finn; Fitzgerald, KA; Lien, E. (2010) Differential Gene Expression Downstream of Toll-like Receptors (TLRs) ROLE OF c-Src AND ACTIVATING TRANSCRIPTION FACTOR 3 (ATF3). Journal of Biological Chemistry
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics
Academic article
Aune, Trond Erik Vee; Bakke, Ingrid; Drabløs, Finn; Lale, Rahmi; Brautaset, Trygve; Valla, Svein. (2010) Directed evolution of the transcription factor XylS for development of improved expression systems. Microbial Biotechnology
Academic article
Tøndervik, Anne; Klinkenberg, Geir; Aarstad, Olav Andreas; Drabløs, Finn; Ertesvåg, Helga; Ellingsen, Trond Erling. (2010) Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages. Journal of Biological Chemistry
Academic article
Muller, Anita; Markussen, Turhan; Drabløs, Finn; Gjøen, Tor; Jørgensen, Trond Ø.; Solem, Stein Tore. (2010) Structural and functional analysis of the hemagglutinin-esterase of infectious salmon anaemia virus. Virus Research
Academic article
Klepper, Kjetil; Drabløs, Finn. (2010) PriorsEditor: a tool for the creation and use of positional priors in motif discovery. Bioinformatics
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics
Academic article
Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. MITAT. Minimally invasive therapy & allied technologies
Abstract
Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies
Abstract
Drabløs, Finn. (2010) Computational challenges in bioinformatics.
Popular scientific chapter/article

2009

Bolstad, Kjersti Hysing; Johansen, Berit; Drabløs, Finn. (2009) Comparison of strategies for benchmarking of motif discovery methods. NTNU, Institutt for biologi
Masters thesis
Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Sousa, Mirta; Müller, Rebekka; Vågbø, Cathrine Broberg. (2009) Identification of a novel, widespread, and functionally important PCNA-binding motif. Journal of Cell Biology
Academic article

2008

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2008) TScan: A two-step de novo motif discovery method. Series on Advances in Bioinformatics and Computational Biology
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics
Academic article
Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics
Academic article

2007

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2007) False Discovery Rates in Identifying Functional DNA Motifs. IEEE (Institute of Electrical and Electronics Engineers)
Academic chapter/article/Conference paper
Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. BMC Bioinformatics
Academic article

2006

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Mittelstedt, L.Mirta; Talstad, Vivi; Aas, Per Arne. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. EMBO Journal
Academic article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Series on Advances in Bioinformatics and Computational Biology
Academic article
Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating Motif Discovery: Motif Matching on Parallel Hardware. Lecture Notes in Computer Science (LNCS)
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2006) A survey of motif discovery methods in an integrated framework. Biology Direct
Academic literature review
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Protein Alpha Shape (PAS) Dock: A new gaussian-based score function suitable for docking in homology modelled protein structures. Journal of Computer-Aided Molecular Design
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. Abstract of Papers of the American Chemical Society
Abstract

2005

Tøndel, Kristin; Drabløs, Finn. (2005) Design of selective inhibitors of Tyrosine Kinase 2. Letters in Drug Design & Discovery
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Lecture Notes in Computer Science (LNCS)
Academic article
Bratlie, Marit Skyrud; Drabløs, Finn. (2005) Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics
Academic article
Drabløs, Finn; Fjelstad, Ståle. (2005) Bioinformatics in the fast lane. ERCIM News
Popular scientific article

2004

Solberg, Berge; Lindmo, Tore; Bratbergsengen, Kjell; Drabløs, Finn; Holmen, Jostein; Hveem, Kristian. (2004) Medical technology: Health surveys and biobanking. A Foresight analysis towards 2020. NTNU, Tapir
Report
Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics.
Academic chapter/article/Conference paper
Drabløs, Finn; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Kavli, Bodil; Bratlie, Marit Skyrud. (2004) Alkylation damage in DNA and RNA - repair mechanisms and medical significance. DNA Repair
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry
Academic article
Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.. (2004) The pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. Journal of Biological Chemistry
Academic article

2002

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Protein Alpha Shape Similarity Analysis (PASSA): A new method for mapping protein binding sites. Application in the design of a selective inhibitor of Tyrosine kinase 2. Journal of Computer-Aided Molecular Design
Academic article
Krokan, Hans Einar; Drabløs, Finn; Slupphaug, Geir. (2002) Uracil in DNA, occurrence, consequences and repair. Oncogene
Academic article

1999

Drabløs, Finn; Nicholson, David; Rønning, Magnus. (1999) EXAFS study of zinc coordination in bacitracin A. Biochimica et Biophysica Acta
Academic article

1995

Baptista, Antonio; Brautaset, Trygve; Drabløs, Finn; Martel, Paulo; Valla, Svein; Petersen, Steffen-B.. (1995) Electrostatic studies of carbohydrate active enzymes. Carbohydrate bioengineering : proceedings of an international conference
Academic article

Journal publications

Marakulina, Daria; Vorontsov, Ilya E.; Kulakovskiy, Ivan V.; Lennartsson, Andreas; Drabløs, Finn Sverre; Medvedeva, Yulia A.. (2023) EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Research (NAR)
Academic article
Rocque, Mariève; Leipart, Vilde; Singh, Ashish Kumar; Mur, Pilar; Olsen, Maren Fridtjofsen; Engebretsen, Lars Fredri. (2023) Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk. Molecular Genetics and Genomics
Academic article
Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; Xavier, Alexandre; Scott, Rodney J.; Drabløs, Finn Sverre; Sjursen, Wenche. (2023) Detection of germline variants with pathogenic potential in 48 patients with familial colorectal cancer by using whole exome sequencing. BMC Medical Genomics
Academic article
Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A.; Severin, Jessica. (2022) Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications
Errata
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2022) FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer. PLOS ONE
Academic article
Rye, Morten Beck; Krossa, Sebastian; Hall, Martina; van Mourik, Casper; Bathen, Tone Frost; Drabløs, Finn. (2022) The genes controlling normal function of citrate and spermine secretion are lost in aggressive prostate cancer and prostate model systems. iScience
Academic article
Leipart, Vilde; Enger, Øyvind; Turcu, Diana Cornelia; Dobrovolska, Olena; Drabløs, Finn; Halskau, Øyvind. (2022) Resolving the zinc binding capacity of honey bee vitellogenin and locating its putative binding sites. Insect molecular biology (Print)
Academic article
Singh, Ashish Kumar; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Vold, Trine; Drabløs, Finn; Sjursen, Wenche. (2021) Detecting copy number variation in next generation sequencing data from diagnostic gene panels. BMC Medical Genomics
Academic article
Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila. (2021) Recommendations for the FAIRification of genomic track metadata. F1000 Research
Academic article
van Mourik, Casper; Ehsani, Rezvan; Drabløs, Finn. (2021) GAPGOM—an R package for gene annotation prediction using GO metrics. BMC Research Notes
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2021) FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks. Genomics, proteomics & bioinformatics
Academic article
Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; McPhillips, Mary; Lavik, Liss Ane; Xavier, Alexandre; Drabløs, Finn. (2020) Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PLOS ONE
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Robust Distance Measures for kNN Classification of Cancer Data. Cancer Informatics
Academic article
Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez. (2020) LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances
Academic article
Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2020) DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Enhanced identification of significant regulators of gene expression. BMC Bioinformatics
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2019) Predicting Cancer Association of LncRNAs by Co-Expression. IEEE Xplore Digital Library
Academic article
Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2019) DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics
Academic literature review
Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry. (2019) MACPET: model-based analysis for ChIA-PET. Biostatistics
Academic article
Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2018) Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer
Academic article
Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi. (2018) Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2018) Measures of co-expression for improved function prediction of long non-coding RNAs. BMC Bioinformatics
Academic article
Ribicic, Deni; Netzer, Roman; Hazen, Terry C.; Techtmann, Stephen M.; Drabløs, Finn; Brakstad, Odd Gunnar. (2018) Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater. Marine Pollution Bulletin
Academic article
Ås, Christina Gabrielsen; Drabløs, Finn; Haugum, Kjersti; Afset, Jan Egil. (2018) Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli. Frontiers in Microbiology
Academic article
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica. (2017) Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research (NAR)
Academic article
Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics
Academic article
Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost. (2017) SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports
Academic article
Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars. (2017) GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience
Academic article
Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Gene regulation in the immediate-early response process. Advances in Biological Regulation
Academic literature review
Ehsani, Rezvan; Drabløs, Finn Sverre. (2016) TopoICSim: A new semantic similarity measure based on gene ontology. BMC Bioinformatics
Academic article
Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.. (2016) A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget
Academic article
Lewin, Anna; Strand, Trine Aakvik; Haugen, Tone; Klinkenberg, Geir; Kotlar, Hans Kristian; Valla, Svein. (2016) Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome. Advances in Enzyme Research
Academic article
Ehsani, Rezvan; Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function. BMC Bioinformatics
Academic article
Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line. (2016) Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE
Academic article
Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck. (2016) A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE
Academic article
Hurst, Laurence D.; Ghanbarian, Avazeh T.; Forrest, Alistair R.R.; Huminiecki, Lukasz; Haberle, Vanja; Drabløs, Finn Sverre. (2015) The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome. PLoS Biology
Academic article
Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Genome sequences of 11 Shiga toxin-producing Escherichia coli strains. Microbiology Resource Announcements (MRA)
Short communication
Mjelle, Robin; Hegre, Siv Anita; Aas, Per Arne; Slupphaug, Geir; Drabløs, Finn; Sætrom, Pål. (2015) Cell cycle regulation of human DNA repair and chromatin remodeling genes. DNA Repair
Academic article
Baglo, Yan; Qian, Peng; Hagen, Lars; Berg, Kristian; Høgset, Anders; Drabløs, Finn. (2015) Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model. Photodiagnosis and Photodynamic Therapy
Academic article
Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2015) A property-based analysis of human transcription factors. BMC Research Notes
Academic article
Medvedeva, Yulia; Lennartsson, Andreas; Ehsani, Rezvan; Kulakovskiy, Ivan; Vorontsov, Ilya E; Panahandeh, Pouda. (2015) EpiFactors: A comprehensive database of human epigenetic factors and complexes. Database: The Journal of Biological Databases and Curation
Academic article
Arner, Erik; Daub, Carsten O; Vitting-Seerup, Kristoffer; Andersson, Robin; Lilje, Berit; Drabløs, Finn. (2015) Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science
Academic article
Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind. (2015) c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLOS ONE
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer
Abstract
Razick, Sabry; Mocnik, Rok; Thomas, Laurent; Ryeng, Einar; Drabløs, Finn; Sætrom, Pål. (2014) The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences. Database: The Journal of Biological Databases and Curation
Academic article
Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer. BMC Medical Genomics
Academic article
Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE
Academic article
Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics
Academic article
Baglo, Yan; Hagen, Lars; Høgset, Anders; Drabløs, Finn; Otterlei, Marit; Gederaas, Odrun Arna. (2014) Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization. BioMed Research International
Academic article
Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A. (2014) Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics
Academic article
Forest, Alistair R.R.; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; de Hoon, Michiel; Haberle, Vanja. (2014) A promoter-level mammalian expression atlas. Nature
Academic article
Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology
Academic article
Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. Pregnancy Hypertension
Abstract
Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC. (2013) Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Medicine
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars. (2013) The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research (NAR)
Academic article
Diaz, Javier Pena; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Research (NAR)
Academic article
Klepper, Kjetil; Drabløs, Finn. (2013) MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis. BMC Bioinformatics
Academic article
Håndstad, Tony; Rye, Morten Beck; Mocnik, Rok; Drabløs, Finn; Sætrom, Pål. (2012) Cell-type specificity of ChIP-predicted transcription factor binding sites. BMC Genomics
Academic article
Kornacker, K; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. BMC Bioinformatics
Academic article
Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports
Academic article
Håndstad, Tony; Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål. (2011) A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites. PLOS ONE
Academic article
Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements. BMC Biology
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit. (2011) The differential disease regulome. BMC Genomics
Academic article
Rye, Morten Beck; Sætrom, Pål; Drabløs, Finn. (2011) A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs. Nucleic Acids Research (NAR)
Academic article
Nguyen, Thuy Tranh; Johnsen, Ingvild Bjellmo; Knetter, CF; Drabløs, Finn; Fitzgerald, KA; Lien, E. (2010) Differential Gene Expression Downstream of Toll-like Receptors (TLRs) ROLE OF c-Src AND ACTIVATING TRANSCRIPTION FACTOR 3 (ATF3). Journal of Biological Chemistry
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics
Academic article
Aune, Trond Erik Vee; Bakke, Ingrid; Drabløs, Finn; Lale, Rahmi; Brautaset, Trygve; Valla, Svein. (2010) Directed evolution of the transcription factor XylS for development of improved expression systems. Microbial Biotechnology
Academic article
Tøndervik, Anne; Klinkenberg, Geir; Aarstad, Olav Andreas; Drabløs, Finn; Ertesvåg, Helga; Ellingsen, Trond Erling. (2010) Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages. Journal of Biological Chemistry
Academic article
Muller, Anita; Markussen, Turhan; Drabløs, Finn; Gjøen, Tor; Jørgensen, Trond Ø.; Solem, Stein Tore. (2010) Structural and functional analysis of the hemagglutinin-esterase of infectious salmon anaemia virus. Virus Research
Academic article
Klepper, Kjetil; Drabløs, Finn. (2010) PriorsEditor: a tool for the creation and use of positional priors in motif discovery. Bioinformatics
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics
Academic article
Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. MITAT. Minimally invasive therapy & allied technologies
Abstract
Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies
Abstract
Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Sousa, Mirta; Müller, Rebekka; Vågbø, Cathrine Broberg. (2009) Identification of a novel, widespread, and functionally important PCNA-binding motif. Journal of Cell Biology
Academic article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2008) TScan: A two-step de novo motif discovery method. Series on Advances in Bioinformatics and Computational Biology
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics
Academic article
Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics
Academic article
Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. BMC Bioinformatics
Academic article
Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Mittelstedt, L.Mirta; Talstad, Vivi; Aas, Per Arne. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. EMBO Journal
Academic article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Series on Advances in Bioinformatics and Computational Biology
Academic article
Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating Motif Discovery: Motif Matching on Parallel Hardware. Lecture Notes in Computer Science (LNCS)
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2006) A survey of motif discovery methods in an integrated framework. Biology Direct
Academic literature review
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Protein Alpha Shape (PAS) Dock: A new gaussian-based score function suitable for docking in homology modelled protein structures. Journal of Computer-Aided Molecular Design
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. Abstract of Papers of the American Chemical Society
Abstract
Tøndel, Kristin; Drabløs, Finn. (2005) Design of selective inhibitors of Tyrosine Kinase 2. Letters in Drug Design & Discovery
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Lecture Notes in Computer Science (LNCS)
Academic article
Bratlie, Marit Skyrud; Drabløs, Finn. (2005) Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics
Academic article
Drabløs, Finn; Fjelstad, Ståle. (2005) Bioinformatics in the fast lane. ERCIM News
Popular scientific article
Drabløs, Finn; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Kavli, Bodil; Bratlie, Marit Skyrud. (2004) Alkylation damage in DNA and RNA - repair mechanisms and medical significance. DNA Repair
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry
Academic article
Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.. (2004) The pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. Journal of Biological Chemistry
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Protein Alpha Shape Similarity Analysis (PASSA): A new method for mapping protein binding sites. Application in the design of a selective inhibitor of Tyrosine kinase 2. Journal of Computer-Aided Molecular Design
Academic article
Krokan, Hans Einar; Drabløs, Finn; Slupphaug, Geir. (2002) Uracil in DNA, occurrence, consequences and repair. Oncogene
Academic article
Drabløs, Finn; Nicholson, David; Rønning, Magnus. (1999) EXAFS study of zinc coordination in bacitracin A. Biochimica et Biophysica Acta
Academic article
Baptista, Antonio; Brautaset, Trygve; Drabløs, Finn; Martel, Paulo; Valla, Svein; Petersen, Steffen-B.. (1995) Electrostatic studies of carbohydrate active enzymes. Carbohydrate bioengineering : proceedings of an international conference
Academic article

Part of book/report

Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn. (2018) The Earth, Life and Genomic Uracil. World Scientific
Chapter
Drabløs, Finn. (2010) Computational challenges in bioinformatics.
Popular scientific chapter/article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2007) False Discovery Rates in Identifying Functional DNA Motifs. IEEE (Institute of Electrical and Electronics Engineers)
Academic chapter/article/Conference paper
Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics.
Academic chapter/article/Conference paper

Report

Klepper, Kjetil; Drabløs, Finn. (2013) Integrated approaches for motif discovery in genomic regions. Doktoravhandlinger ved NTNU (143)
Doctoral dissertation
Bolstad, Kjersti Hysing; Johansen, Berit; Drabløs, Finn. (2009) Comparison of strategies for benchmarking of motif discovery methods. NTNU, Institutt for biologi
Masters thesis
Solberg, Berge; Lindmo, Tore; Bratbergsengen, Kjell; Drabløs, Finn; Holmen, Jostein; Hveem, Kristian. (2004) Medical technology: Health surveys and biobanking. A Foresight analysis towards 2020. NTNU, Tapir
Report

Teaching

Courses

Media

2020

Academic lecture

Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2020) How FunHoP changed the picture. Mabalacat City College MCC International Webinar Series 2020-10-10 -
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2020) A gene signature for citrate and spermine (CS) secretion in the prostate. Sahlgrenska Academy, University of Gothenburg Swedish Symposium on Prostate Cancer Research , Gøteborg 2020-02-03 - 2020-02-04
Poster

Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn. (2020) End-to-End Data Management Toolkit for Norwegian Life Scientists. Norwegian Biochemical Society 56th Contact Meeting of the Norwegian Biochemical Society , Voss 2020-01-23 - 2020-01-26

2019

Lecture

Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2019) The genes controlling citrate and spermine secretion in prostate cancer. Norsk Biokjemisk Selskap Norwegian Biochemical Society 55th Contact Meeting , Røros 2019-01-24 - 2019-01-27
Lecture

Rye, Morten Beck; Tessem, May-Britt; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena. (2019) The expression of genes controlling citrate and spermine secretion is lost in aggressive prostate cancer and metastasis. Nordisk Urologisk Forening The 32nd NUF Congress , Reykjavik 2019-08-05 - 2019-08-08
Lecture

Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder. (2019) ELIXIR.NO - The national infrastructure of bioinformatics. Norsk Biokjemisk Selskap Norwegian Biochemical Society 55th Contact Meeting , Røros 2019-01-24 - 2019-01-27

2018

Poster

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2018) Cell Lines vs. Tissue - A Comparative Study of Gene Expression Using FunHoP. International Conference on Systems Biology 2018-10-28 - 2018-11-01
Poster

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2018) FunHoP – Enhanced visualisation and analysis of functionally homologous proteins in complex metabolic networks. International Study Group for Systems Biology 2018-09-24 - 2018-09-28
Poster

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2018) Computational minimization of stroma tissue confounding reveals systematic downregulation of cholesterol synthesis pathway genes in prostate cancer . Hellenic Society for Computational Biology and Bioinformatic ECCB 2018 - 17th European Conference on Computational Biology , Athen 2018-09-08 - 2918-09-12

2017

Academic lecture

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2017) Aggregating RNA-Seq reads from multiple genes in KEGG metabolic pathways improves interpretability in gene expression pathway analysis. International Conference on Systems Biology , Blacksburg, Virginia 2017-08-06 - 2017-08-12
Academic lecture

Rye, Morten Beck; Tessem, May-Britt; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2017) Cholesterol synthesis pathway genes in prostate cancer are downregulated. Scandinavian Association of Urology 31st NUF Congress , Odense 2017-06-14 - 2017-06-16
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2017) Computational assessment of tissue heterogeneity in patient tissue samples reveals that cholesterol synthesis pathway genes in prostate cancer are consistently downregulated. Swiss Institute of Bioinformatics BC2 Computational Biology Conference , Basel 2017-09-12 - 2017-09-15
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn. (2017) Transcriptional downregulation of cholesterol synthesis pathway genes in prostate cancer. NBS - Norsk Biokjemisk Selskap The 53rd Contact Meeting , Storefjell Resort Hotel, Gol 2017-01-19 -
Poster

Drabløs, Finn. (2017) Standardized meta-data for genomic tracks. ELIXIR Europe ELIXIR All Hands 2017 , Rome 2017-03-21 - 2017-03-23
Lecture

Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind. (2017) ELIXIR.NO - The national infrastructure for bioinformatics. Norwegian Biochemical Society NBS Contact Meeting , Storefjell 2017-01-19 - 2017-01-22
Poster

Drabløs, Finn Sverre; Ehsani, Rezvan. (2017) Improved strategy for function prediction of lncRNAs. RIKEN FANTOM6 Natsu Meeting , Yokohama 2017-08-31 - 2017-09-01

2016

Lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn Sverre. (2016) Transcriptional downregulation of cholesterol synthesis revealed as a hallmark for prostate cancer after adjustment for confounding stroma. EAU- european Association of Urology ESUR16 - 23rd Meeting of the EAU Section of Urological Research , Parma 2016-10-20 - 2016-10-22
Academic lecture

Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Identification and analysis of genes in immediate-early response processes. NBS Contact Meeting 2016-01-21 - 2016-01-24
Academic lecture

Drabløs, Finn Sverre. (2016) How to prepare genes for rapid activation. SocBiN Bioinformatics 2016 2016-06-14 - 2016-06-16
Academic lecture

Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman. (2016) The Genomic HyperBrowser. European Conference on Computational Biology 2016-09-03 - 2016-09-07
Academic lecture

Krokan, Hans Einar; Pettersen, Henrik Sahlin; Mjelle, Robin; Hegre, Siv Anita; Sætrom, Pål; Drabløs, Finn Sverre. (2016) REGULATION OF BASE EXCISION REPAIR – CANONICAL AND NON-CANONICAL PROCESSING OF GENOMIC URACIL. Russian Academy of Sciences, Siberian branch 10th International Multiconference on Bioinformatics of Genome Regulation and Structure\Systems Biology , Akademorodok, Novosibirsk 2016-08-29 - 2016-09-03
Poster

Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J. (2016) A novel non-canonical wnt signature associated with Gleason score, recurrence, metastases and metabolic alterations in prostate cancer. The 8th National PhD Conference in Medical Imaging 2016-11-21 - 2016-11-22

2015

Poster

Lewin, Anna; Johansen, Jostein; Markussen, Sidsel; Josefsen, Kjell Domaas; Jasinovica, Svetlana; Wu, Cheng-Cang. (2015) Isolation and genome sequencing of two Archaea species from a Norwegian deep sub-surface oil reservoir. American Society for Microbiology ASM2015 , New Orleans 2015-05-30 - 2015-06-02
Academic lecture

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Global transcriptional patterns in high- and low-virulent shiga-toxin producing E. coli. VTEC Organizing Comittee The 9th triennial International Shiga (Verocytotoxin) Producing Escherichia coli Infections Symposium , Boston 2015-09-13 - 2015-09-16
Poster

Sandsmark, Elise; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan; Viset, Trond. (2015) Non-canonical Wnt5a-Fizzled2 signaling is associated with metabolic reprogramming and biochemical recurrence in human prostate cancer. ESUR-SBUR15 - The 11th World Congress on Urological Research , Nijmegen 2015-09-10 - 2015-09-12

2014

Poster

Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Genomic comparison reveals heterogeneity among non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS). American Society for Microbiology ASM General meeting 2014 , Boston 2014-05-17 - 2014-05-20
Poster

Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2014) An overrepresentation analysis of human transcription factors. ISMB 2014 , Boston 2014-07-11 - 2014-07-15
Academic lecture

Drabløs, Finn; Sjursen, Wenche. (2014) A medical research infrastructure. COST Action BM1206 Meeting , Barcelona 2014-03-12 - 2014-03-12
Lecture

Drabløs, Finn; Nygård, Ståle; Hovig, Johannes Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell. (2014) ELIXIR - An infrastructure for bioinformatics. NBS NBS Contact Meeting , Røros 2014-01-23 - 2014-01-26
Academic lecture

Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2014) From gene sets to properties; some potential pitfalls and tripwires. Informatics Seminar at UiB , Bergen 2014-12-11 - 2014-12-11
Poster

Hansen, Maren Fridtjofsen; Steinsbekk, Kristin Solum; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Sjursen, Wenche; Drabløs, Finn. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. Translational genomics in biomedicine , Barcelona 2014-03-13 - 2014-03-14
Academic lecture

Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. COST Action BM1206 Meeting , Leiden 2014-09-04 - 2014-09-04
Poster

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2014) Comparative genomics of Stx prophages in HUS- and non-HUS associated shiga toxin-producing Escherichia coli. American Society for Microbiology General Meeting of the American Society for Microbiology , Boston 2014-05-17 - 2014-05-20
Poster

Sanabria, Adriana Maria; Chawla, Konika; Drabløs, Finn; Steigedal, Magnus; Mæland, Johan A.; Afset, Jan Egil. (2014) An attempt to elucidate the genes encoding R3,Z1 and Z2 surface exposed proteins from two streptococcus agalactiae strains from Zimbabwe. SADEBAC, aam(asociacion argentina de microbiologia) 2014 XIX Lancefield International Symposium on Streptococci and Streptococcal Diseases , Buenos Aires 2014-11-09 - 2014-11-12
Academic lecture

Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair. (2014) Repressed promoters in active chromatin. Society for Bioinformatics in Northern Europe (SocBiN) SocBiN Bioinformatics 2014 , Oslo 2014-06-11 - 2014-06-13
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Subtype classification of prostate cancer. IKM Onsdagsmøte, IKM , Kunnskapssenteret, St.Olav 2014-01-15 - 2014-01-15
Poster

Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2014) Simplifying methods for adjusting tissue heterogeneity pinpoint genes responsible for altered metabolism in prostate cancer samples. EAU Section of Urological Research (ESUR) ESUR 2014 , Glasgow, Scotland 2014-10-09 - 2014-10-11
Poster

Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair. (2014) Chromatin data integrated with a human reference atlas of experimentally defined promoters reveal repressed promoters located in active chromatin. Society for Bioinformatics in Northern Europe (SocBiN) SocBiN Bioinformatics 2014 , Oslo 2014-06-11 - 2014-06-13
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2014) Tissue heterogeneity and data integration in prostate cancer. Program for Bioinformatikk (PBI) Bioinformatics Network Seminar: Biological networks – from genes to populations , Sumhuset, Trondheim 2014-12-08 - 2014-12-08
Poster

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2014) Identification of novel sigma- and transcription factors in genomes of pathogenic Escherichia coli. Society for Bioinformatics in Northern Europe (SocBiN) Bioinformatics 2014 , Oslo 2014-06-11 - 2014-06-13

2013

Lecture

Lærdahl, Jon Kristen; Nygård, Ståle; Jonassen, Inge; Hovig, Johannes Eivind; Petersen, Kjell; Drabløs, Finn. (2013) The national technology platform for bioinformatics. Norwegian Biochemical Society, NBS - Contact Meeting 2013 2013-01-31 - 2013-02-03
Poster

Pena-Diaz, Javier; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Norwegian Biochemical Society Norwegian Biochemical Society Contact Meeting , Lillehammer 2013-01-31 - 2013-02-03
Poster

Kornacker, Karl; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2013) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. COST TD801 StatSeq 5th StatSeq Workshop , Helsinki 2013-04-24 - 2013-04-26
Academic lecture

Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. European Congress of the International Society for the Study of Hypertension in Pregnancy , Tromsø 2013-06-12 - 2013-06-14
Poster

Lewin, Anna; Wentzel, Alexander; Johansen, Jostein; Drabløs, Finn; Kotlar, Hans Kristian; Valla, Svein. (2013) Bioprospecting using oil reservoir material - different approaches for search of new enzymes. Bioprosp 13 , Tromsø 2013-02-20 - 2013-02-22
Academic lecture

Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Comparative Metagenomics and Bioprospecting of Oil Reservoirs. International Society for Functionals Metagenomics Second International Conference on Functional Metagenomics. , Pretoria 2013-06-02 - 2013-06-05
Academic lecture

Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Comparative metagenomics of deeply buried oil reservoirs suggests very slow rates of evolution in the deep biosphere. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28
Academic lecture

Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Metagenome analysis of oil reservoir microbial communities and its potential in bioprospecting for new industrial biocatalysts. 3rd Annual World Congress of Marine Biotechnology , Hangzhou 2013-09-23 - 2013-09-25
Academic lecture

Lewin, Anna; Johansen, Jostein; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein; Wentzel, Alexander. (2013) Oil reservoir metagenomics for use in microbial community characterization and bioprospecting. 99th annual meeting of the Southeastern Branch of the American Society for Microbiology , Auburn, AL 2013-11-07 - 2013-11-09
Poster

Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn. (2013) Oil reservoir metagenomes for use in bioprospecting using functional screening and DNA sequence-based data mining. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28

2012

Academic lecture

Drabløs, Finn; Klepper, Kjetil. (2012) MotifLab: A tools and data integration workbench for motif discovery and regulatory sequence analysis. COST Action TD0801 4th StatSeq Workshop , Verona 2012-04-18 - 2012-04-19
Academic lecture

Drabløs, Finn; Rye, Morten Beck; Klepper, Kjetil; Sætrom, Pål. (2012) Definition and analysis of gene sets from time series data. FANTOM RIKEN FANTOM time-courses meeting , Yokohama 2012-10-29 - 2012-11-02
Academic lecture

Drabløs, Finn. (2012) Computer infrastructure for bioinformatics. IT-konferansen Hell , Værnes 2012-04-12 - 2012-04-13
Academic lecture

Drabløs, Finn; Kornacker, Karl; Rye, Morten Beck; Håndstad, Tony. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. Norwegian Bioinformatics Forum , Trondheim 2012-10-18 - 2012-10-19

2011

Poster

Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål; Håndstad, Tony. (2011) Epigenetic Influence on Cell-type specific peaks from ChIP-Seq data. Keystone Symposia Histone code: Fact or fiction? , Midway, Utah 2011-01-10 - 2011-01-15
Poster

Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clusters of ChIP-Seq defined transcription factor binding sites map regulatory elelemnts in the human genome. Cambridge Research Institute Unanswered Questions in Transcription, Annual international Symposium , Cambridge 2011-11-04 - 2011-11-05

2010

Academic lecture

Nesse, Live Lingaas; Drabløs, Finn; Olsaker, Ingrid; Håkerud, Monika; Vestby, Lene Karine; Djønne, Berit K. (2010) Invasion of human epithelial HEp-2 cells by Salmonella is affected by N-acylhomoserine lactone quorum sensing signals. I3S International symposium on Salmonella and salmonellosis , Saint-Malo 2010-06-28 - 2010-06-30
Academic lecture

Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Müller, rebecca; Catterall, Tara C. (2010) Identification of a new and widespread and functionally important PCNA-binding motif. NTNU 6th Norwegian National Proteomics Meeting , trondheim 2010-12-09 - 2010-12-10
Poster

Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. 22nd conference of The Society for Medical Innovation and Technology , Trondheim 2010-09-02 - 2010-09-04
Poster

Welch, Lonnie; Schbath, Sophie; Drabløs, Finn. (2010) Toward a unified framework for motif discovery methods. 18th Annual International Conference on Intelligent Systems for Molecular Biology 2010-07-11 - 2010-07-13
Poster

Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. 22nd conference of The Society for Medical Innovation and Technology , Trondheim 2010-09-02 - 2010-09-04

2009

Academic lecture

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2009) Bioinformatics for downstream data analysis. Metagenome Meeting , Oslo 2009-05-25 - 2009-05-25
Academic lecture

Drabløs, Finn; Hovig, Eivind; Puntervoll, Pål; Jonassen, Inge. (2009) How can bioinformatics drive and support the hunt for drug targets. Norwegian Biochemical Society 45. NBS Contact Meeting , Røros 2009-01-29 - 2009-02-01
Academic lecture

Drabløs, Finn. (2009) Analysing eukaryote gene regulation: in vivo, in vitro, in silico, and back again. Formal Methods in Systems Biology , Dagstuhl 2009-02-23 - 2009-02-27
Academic lecture

Drabløs, Finn. (2009) Computational discovery of composite motifs in DNA. 10th Annual Bioinformatics Open Source Conference , Stockholm 2009-06-27 - 2009-06-28
Academic lecture

Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Westbye, Marianne; Sousa, Mirta; Müller, Rebekka. (2009) The human AlkB homologs 1,2 and 3, localisation and tentative functions. Rikshospitalet-Radiumhospitalet og Universitetet i Oslo 2nd Erling Seeberg Symposium on DNA Repair 2009-06-20 - 2009-06-25
Poster

Puntervoll, Pål; Johansen, Jostein; Mattingsdal, Morten; Hovig, Eivind; Drabløs, Finn; Jonassen, Inge. (2009) The FUGE Bioinformatics platform - A central platform in the FUGE2 period. Norwegian Biochemical Society 45. NBS Contact Meeting , Røros 2009-01-29 - 2009-02-01

2008

Academic lecture

Drabløs, Finn. (2008) Bioinformatics. Norges forskningsråd NOTUR evaluering , Trondheim 2008-06-10 - 2008-06-10
Academic lecture

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15
Academic lecture

Drabløs, Finn. (2008) BiGR - Bioinformatics and gene regulation. Institutt for kreftforskning og molekylær medisin Tirsdagsforedrag , Trondheim 2008-05-20 - 2008-05-20
Academic lecture

Drabløs, Finn; Hovig, Eivind; Puntervoll, Pål; Jonassen, Inge. (2008) The FUGE Bioinformatics Platform - A central platform in the FUGE2 period. Norwegian Biochemical Society 44th Contact Meeting , Lillehammer 2008-01-17 - 2008-01-20
Academic lecture

Drabløs, Finn. (2008) Bioinformatics and gene regulation. IKM Tirsdagsmøte for DMF, NTNU og St. Olavs Hospital , Trondheim 2008-05-20 -
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud; Johansen, Jostein; Schwalie, Petra Catalina. (2008) Gene and genome properties. FUGE Bioinformatics Norwegian Bioinformatics Forum , Bergen 2008-10-09 - 2008-10-10
Academic lecture

Drabløs, Finn. (2008) Bioinformatics and gene regulation. FUGE Bioinformatics FUGE Bioinformatics Information Meeting , Trondheim 2008-04-22 -
Poster

Drabløs, Finn. (2008) Bioinformatics and gene regulation. FUGE Bioinformatics Norwegian Bioinformatics Forum , Bergen 2008-10-09 - 2008-10-10
Poster

Schwalie, Petra Catalina; Drabløs, Finn. (2008) genePI: improved prediction of promoter regions by using a feature-based classification strategy. European Conference on Computational Biology , Cagliari 2008-09-22 - 2008-09-26
Poster

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15
Popular scientific lecture

Drabløs, Finn. (2008) Bioinformatics at NTNU. Access Modt-Norge Orientering til engelske forskningsjournalister , Trondheim 2008-11-03 - 2008-11-03

2007

Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2007) Bioinformatic mapping of viral AlkB domains. Institutt for bioteknologi, NTNU Instituttseminar , Trondheim 2007-02-14 - 2007-02-14
Academic lecture

Drabløs, Finn. (2007) Computational methods for finding transcription factor binding sites: How bad are they?. Institutt for kreftforskning og molekylærmedisin Tirsdagsforelesning , Trondheim 2007-03-13 - 2007-03-13
Academic lecture

Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. Norsk Biokjemisk Selskap Norwegian Biochemical Society 43. Contact Meeting , Lillehammer 2007-02-01 - 2007-02-04
Academic lecture

Drabløs, Finn. (2007) Bioinformatics in Trondheim. Institutt for kreftforskning og molekylær medisin Internseminar om genotyping , Trondheim 2007-01-11 - 2007-01-11

2006

Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. American Chemical Society 231st American Chemical Society National Meeting , Atlanta, GA 2006-03-26 - 2006-03-30
Academic lecture

Drabløs, Finn. (2006) Modelling of gene regulation as a computational challenge. NTNU Fagseminar mellom NTNU og IBM , Trondheim 2006-12-01 - 2006-12-01
Academic lecture

Drabløs, Finn. (2006) Bioinformatikk som redskap for å analysere data fra biobanker. St. Olavs hospital Fredagsmøte , Trondheim 2006-10-06 - 2006-10-06
Academic lecture

Drabløs, Finn. (2006) FUGE Bioinformatics. FUGE Midt-Norge Veien mot FUGE II , Hell 2006-03-28 - 2006-03-29
Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Computational Systems Bioinformatics, CSB 2006, , Stanford, CA 2006-08-14 - 2006-08-18
Academic lecture

Sandve, Geir Kjetil; Stenersen, Kristoffer; Walseng, Vegard; Lekang, Øystein; Klepper, Kjetil; Abul, Osman. (2006) An integrated approach to motif discovery in DNA sequences. Norsk Biokjemisk Selskap The Norwegian Biochemical Society 42. Contact Meeting , Storefjell 2006-01-19 - 2006-01-22
Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) TScan: A two-step de novo motif discovery method. Third Annual RECOMB Satellite Workshop on Regulatory Genomics , National University of Singapore 2006-07-17 - 2006-07-18
Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) False discovery rates in identifying functional DNA motifs. BIBE 2006 - IEEE 6th Symposium on Bioinformatics and Bioengineering , Washington DC 2006-10-16 - 2006-10-18
Academic lecture

Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating motif discovery: motif matching on parallel hardware. WABI 2006 - 6th Workshop on Algorithms in Bioinformatics , Zürich 2006-09-11 - 2006-09-13
Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Talstad, Vivi; Aas, Per Arne. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. Erling Seeberg Symposium on DNA Repair 2006-05-28 - 2006-06-02
Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Aas, Per Arne; Drabløs, Finn. (2006) Crystal structure of hABH3 DNA/RNA demethylase reveals a novel active-site leucine oxidation. Norwegian Biochemical Society (NBS) The Norwegian Biochemical Society 42. Contact Meeting , Storefjell, Storefjell Hotell 2006-01-19 - 2006-01-22

2005

Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Aas, Per Arne; Drabløs, Finn. (2005) Structure of the hABH3 DNA demethylase implicates an oxidized leucine residue in catalysis. 2nd ESF Functional Genomics and disease 2005-09-06 -
Academic lecture

Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES , Melbourne 2005-09-14 - 2005-09-16
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2005) Bioinformatic mapping of viral AlkB-domains. Norwegian Biochemical Society Biochemical Contact Meeting , Tromsø 2005-01-13 - 2005-01-16

2004

Academic lecture

Drabløs, Finn. (2004) Homology modelling of potential drug targets. Norwegian Bioinformatics Forum Meeting , Oslo 2004-05-02 - 2004-05-03
Academic lecture

Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. NTNU InfoSam2020 , Trondheim 2004-04-19 - 2004-04-20
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2004) The optimal multiple sequence alignment: fact or fiction?. Norwegian Biochemical Society 40th Biochemical Contact Meeting , Quality Hotell Hafjell 2004-01-15 - 2004-01-18
Academic lecture

Andersson, Helge Ingolf; Drabløs, Finn; Drange, Helge; Elster, Anne Cathrine; Omre, Henning; Pettersen, Bjørnar. (2004) Position Paper Computional Science. NTNU InfoSam2020 , Trondheim 2004-04-19 - 2004-04-20
Academic lecture

Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.. (2004) The Pseudomonas syringae genome encodes a combined Mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. FUGE National Conference on Microbial Sciences and Technology , Nesbu 2004-08-29 - 2004-08-31

2003

Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Protein Alpha Shape Similarity Analysis (PASSA): Application in the design of a selective inhibitor of Tyrosine kinase 2. Current trends in structure-aided drug design , Lund, Sverige 2003-05-24 -
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Protein Alpha Shape Similarity Analysis (PASSA): Application in the design of a selective inhibitor of Tyrosine kinase 2. 15. Norske kjemometrisymposium , Ål 2003-03-19 -
Poster

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Design of a Selective Inhibitor of Tyrosine Kinase 2. European Conference on Computational Biology , Paris 2003-09-30 -

2002

Academic lecture

Birkeland, O.R; Fjeldstad, S.H; Humberset, H; Nedland, M; Snøve, O; Svingen, B. (2002) A new method for unbiased and automatic data analysis and hypothesis generation. 38.Biokjemiske kontaktmøte Functional genomics-the mosaics of life , Røros 2002-01-20 -
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Evaluation of the tyrosine kinase domain of Tyk2 as a potential drug target. XVIIth International Symposium on Medicinal Chemistry , Barcelona, Spain 2002-09-05 -

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Finn Drabløs

Finn Drabløs

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