Finn Drabløs

About

Professor in bioinformatics and Group Leader for Bioinformatics & Gene Regulation (BiGR): http://bigr.medisin.ntnu.no

NTNU Node Leader and Deputy Head for ELIXIR Norway: https://www.elixir-europe.org/about/elixir-norway

PubMed publications: http://www.ncbi.nlm.nih.gov/pubmed?term=drablos+f

SCOPUS Author ID: 8908254000

Background

Trained in organic chemistry at University of Bergen (MSc 1983), including using computer-based expert system (SECS) and computational methods for strategies in organic synthesis. The computational aspects were basis for a PhD in chemometrics, also at University of Bergen. I was then recruited as a research scientist at SINTEF in Trondheim, where I did contract research on molecular modelling, in particular for pharmaceutical industry. This was gradually expanded into various methods in bioinformatics, in particular for sequence analysis and protein structure prediction. The SINTEF unit was closed down in 2002, and I was offered a position at NTNU as a research scientist. I got a qualification fellowship in 2004, and became full professor in bioinformatics in 2007. Since 2002 I have been strongly involved in building up bioinformatics as a research area at NTNU, initially as leader of Programme for Bioinformatics, later also as NTNU node leader for the FUGE technology platform and the ELIXIR Norway infrastructure for bioinformatics.

Research

Focus of my research for the last 10 years has been on gene regulation, initially based on transcription factors, promoters and enhancers, but increasingly also including epigenetics, in particular histone modifications. The research group has established rigorous methods for benchmarking methods for motif discovery (BMC Bioinformatics 2007, 2008) and ChIP-seq data analysis (Nucleic Acids Res 2011). We have also developed novel methods for motif discovery (BMC Bioinformatics 2008), a tool for detailed analysis of regulatory regions (Bioinformatics 2010; BMC Bioinformatics 2013), and a tool for identification of ChIP-seq peaks (BMC Bioinformatics 2012). This has provided a basis for detailed analysis of gene regulation in several systems, both at the level of transcription factors (J Biol Chem 2010; BMC Genomics 2012; BMC Med 2013; PLoS One 2015), and with respect to histone modifications (PLoS One 2011; BMC Biology 2011; BMC Genomics 2014). This research is now done in collaboration with the international FANTOM consortium, leading to important papers where our main contribution has been on epigenetic regulation (BMC Genomics 2014; Nature 2014; Science 2015; Database 2015; NAR 2017).

For some years we have also built up a cancer-related research activity, in particular on colorectal cancer (CRC) and prostate cancer (PCa). For colorectal cancer we have mainly worked on identification of a specific mutation leading to increased risk for CRC (Familial Cancer 2015), whereas the research on prostate cancer has focused on identification of reliable gene sets for PCa prognosis (BMC Med Genomics 2014; PLoS ONE 2016; Oncotarget 2017).

Through the service and infrastructure activities the group has also been involved in several other projects, like research on prokaryotes, including oil well metagenomics, biodegradation, pathogenic bacteria, and characterization of novel bacterial genes.

Publications

2023

Marakulina, Daria; Vorontsov, Ilya E.; Kulakovskiy, Ivan V.; Lennartsson, Andreas; Drabløs, Finn Sverre; Medvedeva, Yulia A.. (2023) EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Research (NAR). volum 51 (1).
Academic article
Rocque, Mariève; Leipart, Vilde; Singh, Ashish Kumar; Mur, Pilar; Olsen, Maren Fridtjofsen; Engebretsen, Lars Fredri; Martin-Ramos, Edgar; Aligué, Rosa; Sætrom, Pål; Valle, Laura; Drabløs, Finn Sverre; Otterlei, Marit; Sjursen, Wenche. (2023) Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk. Molecular Genetics and Genomics. volum 298.
Academic article

2022

Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A.; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C.; Abugessaisa, Imad. (2022) Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications. volum 13 (1).
Errata
Leipart, Vilde; Enger, Øyvind; Turcu, Diana Cornelia; Dobrovolska, Olena; Drabløs, Finn; Halskau, Øyvind; Amdam, Gro Vang. (2022) Resolving the zinc binding capacity of honey bee vitellogenin and locating its putative binding sites. Insect molecular biology (Print). volum 31 (6).
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2022) FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer. PLOS ONE. volum 17 (10).
Academic article
Rye, Morten Beck; Krossa, Sebastian; Hall, Martina; van Mourik, Casper; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt; Bertilsson, Helena. (2022) The genes controlling normal function of citrate and spermine secretion are lost in aggressive prostate cancer and prostate model systems. iScience. volum 25 (6).
Academic article

2021

Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel; Hovig, Eivind. (2021) Recommendations for the FAIRification of genomic track metadata. F1000 Research. volum 10.
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2021) FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks. Genomics, proteomics & bioinformatics.
Academic article
Singh, Ashish Kumar; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Vold, Trine; Drabløs, Finn; Sjursen, Wenche. (2021) Detecting copy number variation in next generation sequencing data from diagnostic gene panels. BMC Medical Genomics. volum 14 (1).
Academic article
van Mourik, Casper; Ehsani, Rezvan; Drabløs, Finn. (2021) GAPGOM—an R package for gene annotation prediction using GO metrics. BMC Research Notes. volum 14.
Academic article

2020

Ehsani, Rezvan; Drabløs, Finn. (2020) Enhanced identification of significant regulators of gene expression. BMC Bioinformatics. volum 21.
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Robust Distance Measures for kNN Classification of Cancer Data. Cancer Informatics. volum 19.
Academic article
Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2020) DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics. volum 13 (1).
Academic article
Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; McPhillips, Mary; Lavik, Liss Ane; Xavier, Alexandre; Drabløs, Finn; Sjursen, Wenche. (2020) Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PLOS ONE.
Academic article
Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez; Martin Alonso, Mara; Ostrop, Jenny; Matano, Mami; Parmar, Naveen; Kvaløy, Emilie; Spanjers, Roos; Nazmi, Kamran; Rye, Morten Beck; Drabløs, Finn; Arrowsmith, Cheryl H; Dahl, John Arne; Jensen, Kim B.; Sato, Toshiro. (2020) LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances. volum 6 (37).
Academic article

2019

Ehsani, Rezvan; Drabløs, Finn. (2019) Predicting Cancer Association of LncRNAs by Co-Expression. IEEE Xplore digital library.
Academic article
Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2019) DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics. volum 11:193.
Academic literature review
Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry. (2019) MACPET: model-based analysis for ChIA-PET. Biostatistics.
Academic article

2018

Ehsani, Rezvan; Drabløs, Finn. (2018) Measures of co-expression for improved function prediction of long non-coding RNAs. BMC Bioinformatics. volum 19 (1).
Academic article
Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn. (2018) The Earth, Life and Genomic Uracil. Genomic Uracil - Evolution, Biology, Immunology and Disease.
Chapter
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Academic article
Ribicic, Deni; Netzer, Roman; Hazen, Terry C.; Techtmann, Stephen M.; Drabløs, Finn; Brakstad, Odd Gunnar. (2018) Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater. Marine Pollution Bulletin. volum 129 (1).
Academic article
Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2018) Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer. volum 18 (478).
Academic article
Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn. (2018) Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. volum 7:968.
Academic article
Ås, Christina Gabrielsen; Drabløs, Finn; Haugum, Kjersti; Afset, Jan Egil. (2018) Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli. Frontiers in Microbiology. volum 9.
Academic article

2017

Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia; Lennartsson, Andreas; Drabløs, Finn Sverre; Ramilowski, Jordan; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa. (2017) Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research (NAR). volum 45 (D1).
Academic article
Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane; Xavier, Alexandre; Engebretsen, Lars Fredri; Scott, Rodney; Drabløs, Finn Sverre; Sjursen, Wenche. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics. volum 92 (4).
Academic article
Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt. (2017) SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports. volum 7.
Academic article
Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads. (2017) GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience. volum 6 (7).
Academic article

2016

Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Gene regulation in the immediate-early response process. Advances in Biological Regulation. volum 62.
Academic literature review
Ehsani, Rezvan; Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function. BMC Bioinformatics. volum 17 (459).
Academic article
Ehsani, Rezvan; Drabløs, Finn Sverre. (2016) TopoICSim: A new semantic similarity measure based on gene ontology. BMC Bioinformatics. volum 17 (1).
Academic article
Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line; Johansen, Claus; Iversen, Lars. (2016) Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE. volum 11 (12).
Academic article
Lewin, Anna; Strand, Trine Aakvik; Haugen, Tone; Klinkenberg, Geir; Kotlar, Hans Kristian; Valla, Svein; Drabløs, Finn Sverre; Wentzel, Alexander. (2016) Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome. Advances in Enzyme Research. volum 4 (2).
Academic article
Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck. (2016) A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget. volum 8 (6).
Academic article
Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck. (2016) A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE. volum 11 (4).
Academic article

2015

Arner, Erik; Daub, Carsten O; Vitting-Seerup, Kristoffer; Andersson, Robin; Lilje, Berit; Drabløs, Finn; Lennartsson, Andreas; Rönnerblad, Michelle; Hrydziuszko, Olga; Vitezic, Morana; Freeman, Tom; Alhendi, Ahmad; Arner, Peter; Axton, Richard; Baillie, Kenneth; Beckhouse, Anthony G.; Bodega, Beatrice; Briggs, James A.; Brombacher, Frank. (2015) Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science. volum 347 (6225).
Academic article
Baglo, Yan; Qian, Peng; Hagen, Lars; Berg, Kristian; Høgset, Anders; Drabløs, Finn; Gederaas, Odrun Arna. (2015) Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model. Photodiagnosis and Photodynamic Therapy. volum 12 (1).
Academic article
Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2015) A property-based analysis of human transcription factors. BMC Research Notes. volum 8 (1).
Academic article
Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke; Eskeland, Ragnhild. (2015) c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLOS ONE. volum 10 (7).
Academic article
Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Genome sequences of 11 Shiga toxin-producing Escherichia coli strains. Microbiology Resource Announcements (MRA). volum 3 (3).
Short communication
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål; Sandvik, Arne Kristian; Drabløs, Finn; Sjursen, Wenche. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer. volum 14 (3).
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål; Sandvik, Arne Kristian; Drabløs, Finn; Sjursen, Wenche. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer. volum 14 (1).
Abstract
Hurst, Laurence D.; Ghanbarian, Avazeh T.; Forrest, Alistair R.R.; Huminiecki, Lukasz; Haberle, Vanja; Drabløs, Finn Sverre; Rye, Morten Beck. (2015) The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome. PLoS Biology. volum 13:e1002315 (12).
Academic article
Medvedeva, Yulia; Lennartsson, Andreas; Ehsani, Rezvan; Kulakovskiy, Ivan; Vorontsov, Ilya E; Panahandeh, Pouda; Khimulya, Grigory; Kasukawa, Takeya; Drabløs, Finn. (2015) EpiFactors: A comprehensive database of human epigenetic factors and complexes. Database: The Journal of Biological Databases and Curation. volum 2015.
Academic article
Mjelle, Robin; Hegre, Siv Anita; Aas, Per Arne; Slupphaug, Geir; Drabløs, Finn; Sætrom, Pål; Krokan, Hans Einar. (2015) Cell cycle regulation of human DNA repair and chromatin remodeling genes. DNA Repair. volum 30.
Academic article

2014

Baglo, Yan; Hagen, Lars; Høgset, Anders; Drabløs, Finn; Otterlei, Marit; Gederaas, Odrun Arna. (2014) Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization. BioMed Research International. volum 14 (74).
Academic article
Forest, Alistair R.R.; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; de Hoon, Michiel; Haberle, Vanja; Lassmann, Timo; Kulakovskiy, Ivan; Lizio, Marina; Itoh, Masayoshi; Andersson, Robin; Mungall, Christopher; Meehan, Terrence; Schmeier, Sebastian; Bertin, Nicolas; Jørgensen, Mette Kristine; Dimont, Emmanuel; Arner, Erik; Schmidl, Christian. (2014) A promoter-level mammalian expression atlas. Nature. volum 507 (7493).
Academic article
Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne; Drabløs, Finn; Afset, Jan Egil. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE. volum 9 (10).
Academic article
Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology. volum 16 (2).
Academic article
Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics. volum 15 (192).
Academic article
Razick, Sabry; Mocnik, Rok; Thomas, Laurent; Ryeng, Einar; Drabløs, Finn; Sætrom, Pål. (2014) The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences. Database: The Journal of Biological Databases and Curation.
Academic article
Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer. BMC Medical Genomics. volum 7 (50).
Academic article
Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A; Drabløs, Finn. (2014) Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics. volum 15 (1).
Academic article

2013

Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck. (2013) The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research (NAR). volum 41 (W1).
Academic article
Diaz, Javier Pena; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan; Lyle, Robert; Drabløs, Finn; Krokan, Hans Einar; Sætrom, Pål. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Research (NAR). volum 41 (5).
Academic article
Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C; Ramagopalan, Sreeram V. (2013) Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Medicine. volum 11 (163).
Academic article
Klepper, Kjetil; Drabløs, Finn. (2013) MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis. BMC Bioinformatics. volum 14:9.
Academic article
Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti; Lyslo, Ingvill; Tappert, Christian; Odland, Maria Lisa; Strand, Kristin Melheim; Fenstad, Mona H.; Drabløs, Finn; Skorpen, Frank; Moses, Eric K; Austgulen, Rigmor; Bjørge, Line. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. Pregnancy Hypertension. volum 3 (2).
Abstract

2012

Håndstad, Tony; Rye, Morten Beck; Mocnik, Rok; Drabløs, Finn; Sætrom, Pål. (2012) Cell-type specificity of ChIP-predicted transcription factor binding sites. BMC Genomics. volum 13.
Academic article
Kornacker, K; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. BMC Bioinformatics. volum 13.
Academic article

2011

Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo; Hovig, Eivind. (2011) The differential disease regulome. BMC Genomics. volum 12.
Academic article
Håndstad, Tony; Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål. (2011) A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites. PLOS ONE. volum 6 (4).
Academic article
Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel; Winnberg, Asgeir; Ringrose, Philip; Strand, Trine Aakvik; Ryeng, Einar; Jakobsen, Kjetill Sigurd; Drabløs, Finn; Valla, Svein. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports. volum 3 (6).
Academic article
Rye, Morten Beck; Sætrom, Pål; Drabløs, Finn. (2011) A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs. Nucleic Acids Research (NAR). volum 39 (4).
Academic article
Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements. BMC Biology. volum 9.
Academic article

2010

Aune, Trond Erik Vee; Bakke, Ingrid; Drabløs, Finn; Lale, Rahmi; Brautaset, Trygve; Valla, Svein. (2010) Directed evolution of the transcription factor XylS for development of improved expression systems. Microbial Biotechnology. volum 3 (1).
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics. volum 11.
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics. volum 11.
Academic article
Drabløs, Finn. (2010) Computational challenges in bioinformatics. Computational Science and Engineering: Challenges and Opportunities.
publications.POPVIT_KAPITTEL
Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. MITAT. Minimally invasive therapy & allied technologies. volum 19.
Abstract
Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind; Jonassen, Inge. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies. volum 19.
Abstract
Klepper, Kjetil; Drabløs, Finn. (2010) PriorsEditor: a tool for the creation and use of positional priors in motif discovery. Bioinformatics. volum 26 (17).
Academic article
Muller, Anita; Markussen, Turhan; Drabløs, Finn; Gjøen, Tor; Jørgensen, Trond Ø.; Solem, Stein Tore; Mjaaland, Siri. (2010) Structural and functional analysis of the hemagglutinin-esterase of infectious salmon anaemia virus. Virus Research. volum 151 (2).
Academic article
Nguyen, Thuy Tranh; Johnsen, Ingvild Bjellmo; Knetter, CF; Drabløs, Finn; Fitzgerald, KA; Lien, E; Anthonsen, Marit Walbye. (2010) Differential Gene Expression Downstream of Toll-like Receptors (TLRs) ROLE OF c-Src AND ACTIVATING TRANSCRIPTION FACTOR 3 (ATF3). Journal of Biological Chemistry. volum 285 (22).
Academic article
Tøndervik, Anne; Klinkenberg, Geir; Aarstad, Olav Andreas; Drabløs, Finn; Ertesvåg, Helga; Ellingsen, Trond Erling; Skjåk-Bræk, Gudmund; Valla, Svein; Sletta, Håvard. (2010) Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages. Journal of Biological Chemistry. volum 285 (46).
Academic article

2009

Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Sousa, Mirta; Müller, Rebekka; Vågbø, Cathrine Broberg; Catterall, Tara; Liabakk, Nina-Beate; Slupphaug, Geir; Drabløs, Finn; Krokan, Hans Einar; Otterlei, Marit. (2009) Identification of a novel, widespread, and functionally important PCNA-binding motif. Journal of Cell Biology. volum 186 (5).
Academic article

2008

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2008) TScan: A two-step de novo motif discovery method. Series on Advances in Bioinformatics and Computational Biology. volum 8.
Academic article
Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics. volum 9 (123).
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics. volum 9.
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics. volum 9 (527).
Academic article

2007

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2007) False Discovery Rates in Identifying Functional DNA Motifs. Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering.
Academic chapter/article/Conference paper
Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. BMC Bioinformatics. volum 8 (193).
Academic article

2006

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Series on Advances in Bioinformatics and Computational Biology. volum 4.
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2006) A survey of motif discovery methods in an integrated framework. Biology Direct. volum 1.
Academic literature review
Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating Motif Discovery: Motif Matching on Parallel Hardware. Lecture Notes in Computer Science (LNCS). volum 4175.
Academic article
Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Mittelstedt, L.Mirta; Talstad, Vivi; Aas, Per Arne; Drabløs, Finn; Krokan, Hans Einar; Tainer, John A.; Slupphaug, Geir. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. EMBO Journal. volum 25.
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. Abstract of Papers of the American Chemical Society. volum 231.
Abstract
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Protein Alpha Shape (PAS) Dock: A new gaussian-based score function suitable for docking in homology modelled protein structures. Journal of Computer-Aided Molecular Design. volum 20 (3).
Academic article

2005

Bratlie, Marit Skyrud; Drabløs, Finn. (2005) Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics. volum 6.
Academic article
Drabløs, Finn; Fjelstad, Ståle. (2005) Bioinformatics in the fast lane. ERCIM News. volum 60.
Popular scientific article
Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Lecture Notes in Computer Science (LNCS). volum 3683.
Academic article
Tøndel, Kristin; Drabløs, Finn. (2005) Design of selective inhibitors of Tyrosine Kinase 2. Letters in Drug Design & Discovery. volum 2 (7).
Academic article

2004

Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. Infosam2020, Information Society of 2020.
Academic chapter/article/Conference paper
Solberg, Berge; Lindmo, Tore; Bratbergsengen, Kjell; Drabløs, Finn; Holmen, Jostein; Hveem, Kristian; Johnsen, Roar; Langaas, Mette; Skorpen, Frank; Stokke, Bjørn Torger. (2004) Medical technology: Health surveys and biobanking. A Foresight analysis towards 2020. 2004.
Report
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry. volum 4 (7).
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry.
Academic article
Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.; Skjåk-Bræk, Gudmund; Valla, Svein. (2004) The pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. Journal of Biological Chemistry. volum 279 (28).
Academic article
Drabløs, Finn; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Kavli, Bodil; Bratlie, Marit Skyrud; Diaz, Javier Pena; Otterlei, Marit; Slupphaug, Geir; Krokan, Hans Einar. (2004) Alkylation damage in DNA and RNA - repair mechanisms and medical significance. DNA Repair. volum 3 (11).
Academic literature review

2002

Krokan, Hans Einar; Drabløs, Finn; Slupphaug, Geir. (2002) Uracil in DNA, occurrence, consequences and repair. Oncogene. volum 21.
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Protein Alpha Shape Similarity Analysis (PASSA): A new method for mapping protein binding sites. Application in the design of a selective inhibitor of Tyrosine kinase 2. Journal of Computer-Aided Molecular Design. volum 16 (11).
Academic article

1999

Drabløs, Finn; Nicholson, David; Rønning, Magnus. (1999) EXAFS study of zinc coordination in bacitracin A. Biochimica et Biophysica Acta. volum 1431.
Academic article

1995

Baptista, Antonio; Brautaset, Trygve; Drabløs, Finn; Martel, Paulo; Valla, Svein; Petersen, Steffen-B.. (1995) Electrostatic studies of carbohydrate active enzymes. Carbohydrate bioengineering : proceedings of an international conference. volum 10.
Academic article

Journal publications

Marakulina, Daria; Vorontsov, Ilya E.; Kulakovskiy, Ivan V.; Lennartsson, Andreas; Drabløs, Finn Sverre; Medvedeva, Yulia A.. (2023) EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Research (NAR). volum 51 (1).
Academic article
Rocque, Mariève; Leipart, Vilde; Singh, Ashish Kumar; Mur, Pilar; Olsen, Maren Fridtjofsen; Engebretsen, Lars Fredri; Martin-Ramos, Edgar; Aligué, Rosa; Sætrom, Pål; Valle, Laura; Drabløs, Finn Sverre; Otterlei, Marit; Sjursen, Wenche. (2023) Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk. Molecular Genetics and Genomics. volum 298.
Academic article
Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A.; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C.; Abugessaisa, Imad. (2022) Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications. volum 13 (1).
Errata
Leipart, Vilde; Enger, Øyvind; Turcu, Diana Cornelia; Dobrovolska, Olena; Drabløs, Finn; Halskau, Øyvind; Amdam, Gro Vang. (2022) Resolving the zinc binding capacity of honey bee vitellogenin and locating its putative binding sites. Insect molecular biology (Print). volum 31 (6).
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2022) FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer. PLOS ONE. volum 17 (10).
Academic article
Rye, Morten Beck; Krossa, Sebastian; Hall, Martina; van Mourik, Casper; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt; Bertilsson, Helena. (2022) The genes controlling normal function of citrate and spermine secretion are lost in aggressive prostate cancer and prostate model systems. iScience. volum 25 (6).
Academic article
Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel; Hovig, Eivind. (2021) Recommendations for the FAIRification of genomic track metadata. F1000 Research. volum 10.
Academic article
Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2021) FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks. Genomics, proteomics & bioinformatics.
Academic article
Singh, Ashish Kumar; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Vold, Trine; Drabløs, Finn; Sjursen, Wenche. (2021) Detecting copy number variation in next generation sequencing data from diagnostic gene panels. BMC Medical Genomics. volum 14 (1).
Academic article
van Mourik, Casper; Ehsani, Rezvan; Drabløs, Finn. (2021) GAPGOM—an R package for gene annotation prediction using GO metrics. BMC Research Notes. volum 14.
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Enhanced identification of significant regulators of gene expression. BMC Bioinformatics. volum 21.
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2020) Robust Distance Measures for kNN Classification of Cancer Data. Cancer Informatics. volum 19.
Academic article
Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2020) DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics. volum 13 (1).
Academic article
Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; McPhillips, Mary; Lavik, Liss Ane; Xavier, Alexandre; Drabløs, Finn; Sjursen, Wenche. (2020) Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PLOS ONE.
Academic article
Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez; Martin Alonso, Mara; Ostrop, Jenny; Matano, Mami; Parmar, Naveen; Kvaløy, Emilie; Spanjers, Roos; Nazmi, Kamran; Rye, Morten Beck; Drabløs, Finn; Arrowsmith, Cheryl H; Dahl, John Arne; Jensen, Kim B.; Sato, Toshiro. (2020) LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances. volum 6 (37).
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2019) Predicting Cancer Association of LncRNAs by Co-Expression. IEEE Xplore digital library.
Academic article
Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck. (2019) DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics. volum 11:193.
Academic literature review
Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry. (2019) MACPET: model-based analysis for ChIA-PET. Biostatistics.
Academic article
Ehsani, Rezvan; Drabløs, Finn. (2018) Measures of co-expression for improved function prediction of long non-coding RNAs. BMC Bioinformatics. volum 19 (1).
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Academic article
Ribicic, Deni; Netzer, Roman; Hazen, Terry C.; Techtmann, Stephen M.; Drabløs, Finn; Brakstad, Odd Gunnar. (2018) Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater. Marine Pollution Bulletin. volum 129 (1).
Academic article
Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2018) Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer. volum 18 (478).
Academic article
Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn. (2018) Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. volum 7:968.
Academic article
Ås, Christina Gabrielsen; Drabløs, Finn; Haugum, Kjersti; Afset, Jan Egil. (2018) Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli. Frontiers in Microbiology. volum 9.
Academic article
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia; Lennartsson, Andreas; Drabløs, Finn Sverre; Ramilowski, Jordan; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa. (2017) Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research (NAR). volum 45 (D1).
Academic article
Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane; Xavier, Alexandre; Engebretsen, Lars Fredri; Scott, Rodney; Drabløs, Finn Sverre; Sjursen, Wenche. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics. volum 92 (4).
Academic article
Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt. (2017) SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports. volum 7.
Academic article
Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads. (2017) GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience. volum 6 (7).
Academic article
Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Gene regulation in the immediate-early response process. Advances in Biological Regulation. volum 62.
Academic literature review
Ehsani, Rezvan; Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function. BMC Bioinformatics. volum 17 (459).
Academic article
Ehsani, Rezvan; Drabløs, Finn Sverre. (2016) TopoICSim: A new semantic similarity measure based on gene ontology. BMC Bioinformatics. volum 17 (1).
Academic article
Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line; Johansen, Claus; Iversen, Lars. (2016) Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE. volum 11 (12).
Academic article
Lewin, Anna; Strand, Trine Aakvik; Haugen, Tone; Klinkenberg, Geir; Kotlar, Hans Kristian; Valla, Svein; Drabløs, Finn Sverre; Wentzel, Alexander. (2016) Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome. Advances in Enzyme Research. volum 4 (2).
Academic article
Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck. (2016) A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget. volum 8 (6).
Academic article
Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck. (2016) A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE. volum 11 (4).
Academic article
Arner, Erik; Daub, Carsten O; Vitting-Seerup, Kristoffer; Andersson, Robin; Lilje, Berit; Drabløs, Finn; Lennartsson, Andreas; Rönnerblad, Michelle; Hrydziuszko, Olga; Vitezic, Morana; Freeman, Tom; Alhendi, Ahmad; Arner, Peter; Axton, Richard; Baillie, Kenneth; Beckhouse, Anthony G.; Bodega, Beatrice; Briggs, James A.; Brombacher, Frank. (2015) Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science. volum 347 (6225).
Academic article
Baglo, Yan; Qian, Peng; Hagen, Lars; Berg, Kristian; Høgset, Anders; Drabløs, Finn; Gederaas, Odrun Arna. (2015) Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model. Photodiagnosis and Photodynamic Therapy. volum 12 (1).
Academic article
Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2015) A property-based analysis of human transcription factors. BMC Research Notes. volum 8 (1).
Academic article
Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke; Eskeland, Ragnhild. (2015) c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLOS ONE. volum 10 (7).
Academic article
Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Genome sequences of 11 Shiga toxin-producing Escherichia coli strains. Microbiology Resource Announcements (MRA). volum 3 (3).
Short communication
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål; Sandvik, Arne Kristian; Drabløs, Finn; Sjursen, Wenche. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer. volum 14 (3).
Academic article
Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål; Sandvik, Arne Kristian; Drabløs, Finn; Sjursen, Wenche. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer. volum 14 (1).
Abstract
Hurst, Laurence D.; Ghanbarian, Avazeh T.; Forrest, Alistair R.R.; Huminiecki, Lukasz; Haberle, Vanja; Drabløs, Finn Sverre; Rye, Morten Beck. (2015) The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome. PLoS Biology. volum 13:e1002315 (12).
Academic article
Medvedeva, Yulia; Lennartsson, Andreas; Ehsani, Rezvan; Kulakovskiy, Ivan; Vorontsov, Ilya E; Panahandeh, Pouda; Khimulya, Grigory; Kasukawa, Takeya; Drabløs, Finn. (2015) EpiFactors: A comprehensive database of human epigenetic factors and complexes. Database: The Journal of Biological Databases and Curation. volum 2015.
Academic article
Mjelle, Robin; Hegre, Siv Anita; Aas, Per Arne; Slupphaug, Geir; Drabløs, Finn; Sætrom, Pål; Krokan, Hans Einar. (2015) Cell cycle regulation of human DNA repair and chromatin remodeling genes. DNA Repair. volum 30.
Academic article
Baglo, Yan; Hagen, Lars; Høgset, Anders; Drabløs, Finn; Otterlei, Marit; Gederaas, Odrun Arna. (2014) Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization. BioMed Research International. volum 14 (74).
Academic article
Forest, Alistair R.R.; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; de Hoon, Michiel; Haberle, Vanja; Lassmann, Timo; Kulakovskiy, Ivan; Lizio, Marina; Itoh, Masayoshi; Andersson, Robin; Mungall, Christopher; Meehan, Terrence; Schmeier, Sebastian; Bertin, Nicolas; Jørgensen, Mette Kristine; Dimont, Emmanuel; Arner, Erik; Schmidl, Christian. (2014) A promoter-level mammalian expression atlas. Nature. volum 507 (7493).
Academic article
Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne; Drabløs, Finn; Afset, Jan Egil. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE. volum 9 (10).
Academic article
Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology. volum 16 (2).
Academic article
Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics. volum 15 (192).
Academic article
Razick, Sabry; Mocnik, Rok; Thomas, Laurent; Ryeng, Einar; Drabløs, Finn; Sætrom, Pål. (2014) The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences. Database: The Journal of Biological Databases and Curation.
Academic article
Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer. BMC Medical Genomics. volum 7 (50).
Academic article
Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A; Drabløs, Finn. (2014) Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics. volum 15 (1).
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck. (2013) The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research (NAR). volum 41 (W1).
Academic article
Diaz, Javier Pena; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan; Lyle, Robert; Drabløs, Finn; Krokan, Hans Einar; Sætrom, Pål. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Research (NAR). volum 41 (5).
Academic article
Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C; Ramagopalan, Sreeram V. (2013) Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Medicine. volum 11 (163).
Academic article
Klepper, Kjetil; Drabløs, Finn. (2013) MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis. BMC Bioinformatics. volum 14:9.
Academic article
Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti; Lyslo, Ingvill; Tappert, Christian; Odland, Maria Lisa; Strand, Kristin Melheim; Fenstad, Mona H.; Drabløs, Finn; Skorpen, Frank; Moses, Eric K; Austgulen, Rigmor; Bjørge, Line. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. Pregnancy Hypertension. volum 3 (2).
Abstract
Håndstad, Tony; Rye, Morten Beck; Mocnik, Rok; Drabløs, Finn; Sætrom, Pål. (2012) Cell-type specificity of ChIP-predicted transcription factor binding sites. BMC Genomics. volum 13.
Academic article
Kornacker, K; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. BMC Bioinformatics. volum 13.
Academic article
Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo; Hovig, Eivind. (2011) The differential disease regulome. BMC Genomics. volum 12.
Academic article
Håndstad, Tony; Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål. (2011) A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites. PLOS ONE. volum 6 (4).
Academic article
Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel; Winnberg, Asgeir; Ringrose, Philip; Strand, Trine Aakvik; Ryeng, Einar; Jakobsen, Kjetill Sigurd; Drabløs, Finn; Valla, Svein. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports. volum 3 (6).
Academic article
Rye, Morten Beck; Sætrom, Pål; Drabløs, Finn. (2011) A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs. Nucleic Acids Research (NAR). volum 39 (4).
Academic article
Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements. BMC Biology. volum 9.
Academic article
Aune, Trond Erik Vee; Bakke, Ingrid; Drabløs, Finn; Lale, Rahmi; Brautaset, Trygve; Valla, Svein. (2010) Directed evolution of the transcription factor XylS for development of improved expression systems. Microbial Biotechnology. volum 3 (1).
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics. volum 11.
Academic article
Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics. volum 11.
Academic article
Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. MITAT. Minimally invasive therapy & allied technologies. volum 19.
Abstract
Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind; Jonassen, Inge. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies. volum 19.
Abstract
Klepper, Kjetil; Drabløs, Finn. (2010) PriorsEditor: a tool for the creation and use of positional priors in motif discovery. Bioinformatics. volum 26 (17).
Academic article
Muller, Anita; Markussen, Turhan; Drabløs, Finn; Gjøen, Tor; Jørgensen, Trond Ø.; Solem, Stein Tore; Mjaaland, Siri. (2010) Structural and functional analysis of the hemagglutinin-esterase of infectious salmon anaemia virus. Virus Research. volum 151 (2).
Academic article
Nguyen, Thuy Tranh; Johnsen, Ingvild Bjellmo; Knetter, CF; Drabløs, Finn; Fitzgerald, KA; Lien, E; Anthonsen, Marit Walbye. (2010) Differential Gene Expression Downstream of Toll-like Receptors (TLRs) ROLE OF c-Src AND ACTIVATING TRANSCRIPTION FACTOR 3 (ATF3). Journal of Biological Chemistry. volum 285 (22).
Academic article
Tøndervik, Anne; Klinkenberg, Geir; Aarstad, Olav Andreas; Drabløs, Finn; Ertesvåg, Helga; Ellingsen, Trond Erling; Skjåk-Bræk, Gudmund; Valla, Svein; Sletta, Håvard. (2010) Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages. Journal of Biological Chemistry. volum 285 (46).
Academic article
Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Sousa, Mirta; Müller, Rebekka; Vågbø, Cathrine Broberg; Catterall, Tara; Liabakk, Nina-Beate; Slupphaug, Geir; Drabløs, Finn; Krokan, Hans Einar; Otterlei, Marit. (2009) Identification of a novel, widespread, and functionally important PCNA-binding motif. Journal of Cell Biology. volum 186 (5).
Academic article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2008) TScan: A two-step de novo motif discovery method. Series on Advances in Bioinformatics and Computational Biology. volum 8.
Academic article
Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics. volum 9 (123).
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics. volum 9.
Academic article
Sandve, Geir Kjetil; Abul, Osman; Drabløs, Finn. (2008) Compo: composite motif discovery using discrete models. BMC Bioinformatics. volum 9 (527).
Academic article
Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. BMC Bioinformatics. volum 8 (193).
Academic article
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Series on Advances in Bioinformatics and Computational Biology. volum 4.
Academic article
Sandve, Geir Kjetil; Drabløs, Finn. (2006) A survey of motif discovery methods in an integrated framework. Biology Direct. volum 1.
Academic literature review
Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating Motif Discovery: Motif Matching on Parallel Hardware. Lecture Notes in Computer Science (LNCS). volum 4175.
Academic article
Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Mittelstedt, L.Mirta; Talstad, Vivi; Aas, Per Arne; Drabløs, Finn; Krokan, Hans Einar; Tainer, John A.; Slupphaug, Geir. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. EMBO Journal. volum 25.
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. Abstract of Papers of the American Chemical Society. volum 231.
Abstract
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Protein Alpha Shape (PAS) Dock: A new gaussian-based score function suitable for docking in homology modelled protein structures. Journal of Computer-Aided Molecular Design. volum 20 (3).
Academic article
Bratlie, Marit Skyrud; Drabløs, Finn. (2005) Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics. volum 6.
Academic article
Drabløs, Finn; Fjelstad, Ståle. (2005) Bioinformatics in the fast lane. ERCIM News. volum 60.
Popular scientific article
Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Lecture Notes in Computer Science (LNCS). volum 3683.
Academic article
Tøndel, Kristin; Drabløs, Finn. (2005) Design of selective inhibitors of Tyrosine Kinase 2. Letters in Drug Design & Discovery. volum 2 (7).
Academic article
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry. volum 4 (7).
Academic literature review
Wieman, Heather; Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2004) Homology-based modelling of targets for rational drug design. Medicinal chemistry.
Academic article
Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.; Skjåk-Bræk, Gudmund; Valla, Svein. (2004) The pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. Journal of Biological Chemistry. volum 279 (28).
Academic article
Drabløs, Finn; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Kavli, Bodil; Bratlie, Marit Skyrud; Diaz, Javier Pena; Otterlei, Marit; Slupphaug, Geir; Krokan, Hans Einar. (2004) Alkylation damage in DNA and RNA - repair mechanisms and medical significance. DNA Repair. volum 3 (11).
Academic literature review
Krokan, Hans Einar; Drabløs, Finn; Slupphaug, Geir. (2002) Uracil in DNA, occurrence, consequences and repair. Oncogene. volum 21.
Academic article
Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Protein Alpha Shape Similarity Analysis (PASSA): A new method for mapping protein binding sites. Application in the design of a selective inhibitor of Tyrosine kinase 2. Journal of Computer-Aided Molecular Design. volum 16 (11).
Academic article
Drabløs, Finn; Nicholson, David; Rønning, Magnus. (1999) EXAFS study of zinc coordination in bacitracin A. Biochimica et Biophysica Acta. volum 1431.
Academic article
Baptista, Antonio; Brautaset, Trygve; Drabløs, Finn; Martel, Paulo; Valla, Svein; Petersen, Steffen-B.. (1995) Electrostatic studies of carbohydrate active enzymes. Carbohydrate bioengineering : proceedings of an international conference. volum 10.
Academic article

Part of book/report

Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn. (2018) The Earth, Life and Genomic Uracil. Genomic Uracil - Evolution, Biology, Immunology and Disease.
Chapter
Drabløs, Finn. (2010) Computational challenges in bioinformatics. Computational Science and Engineering: Challenges and Opportunities.
publications.POPVIT_KAPITTEL
Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2007) False Discovery Rates in Identifying Functional DNA Motifs. Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering.
Academic chapter/article/Conference paper
Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. Infosam2020, Information Society of 2020.
Academic chapter/article/Conference paper

Report

Solberg, Berge; Lindmo, Tore; Bratbergsengen, Kjell; Drabløs, Finn; Holmen, Jostein; Hveem, Kristian; Johnsen, Roar; Langaas, Mette; Skorpen, Frank; Stokke, Bjørn Torger. (2004) Medical technology: Health surveys and biobanking. A Foresight analysis towards 2020. 2004.
Report

Teaching

Courses

Media

2020

Poster

Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge. (2020) End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society . Norwegian Biochemical Society; Voss. 2020-01-23 - 2020-01-26.
Academic lecture

Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck. (2020) How FunHoP changed the picture. MCC International Webinar Series . Mabalacat City College; 2020-10-10.
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2020) A gene signature for citrate and spermine (CS) secretion in the prostate. Swedish Symposium on Prostate Cancer Research . Sahlgrenska Academy, University of Gothenburg; Gøteborg. 2020-02-03 - 2020-02-04.

2019

Lecture

Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2019) The genes controlling citrate and spermine secretion in prostate cancer. Norwegian Biochemical Society 55th Contact Meeting . Norsk Biokjemisk Selskap; Røros. 2019-01-24 - 2019-01-27.
Lecture

Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge. (2019) ELIXIR.NO - The national infrastructure of bioinformatics. Norwegian Biochemical Society 55th Contact Meeting . Norsk Biokjemisk Selskap; Røros. 2019-01-24 - 2019-01-27.
Lecture

Rye, Morten Beck; Tessem, May-Britt; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena. (2019) The expression of genes controlling citrate and spermine secretion is lost in aggressive prostate cancer and metastasis. The 32nd NUF Congress . Nordisk Urologisk Forening; Reykjavik. 2019-08-05 - 2019-08-08.

2018

Poster

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2018) Cell Lines vs. Tissue - A Comparative Study of Gene Expression Using FunHoP. International Conference on Systems Biology ; 2018-10-28 - 2018-11-01.
Poster

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2018) FunHoP – Enhanced visualisation and analysis of functionally homologous proteins in complex metabolic networks. International Study Group for Systems Biology ; 2018-09-24 - 2018-09-28.
Poster

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2018) Computational minimization of stroma tissue confounding reveals systematic downregulation of cholesterol synthesis pathway genes in prostate cancer. ECCB 2018 - 17th European Conference on Computational Biology . Hellenic Society for Computational Biology and Bioinformatic; Athen. 2018-09-08 - 2918-09-12.

2017

Poster

Drabløs, Finn. (2017) Standardized meta-data for genomic tracks. ELIXIR All Hands 2017 . ELIXIR Europe; Rome. 2017-03-21 - 2017-03-23.
Poster

Drabløs, Finn Sverre; Ehsani, Rezvan. (2017) Improved strategy for function prediction of lncRNAs. FANTOM6 Natsu Meeting . RIKEN; Yokohama. 2017-08-31 - 2017-09-01.
Lecture

Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge. (2017) ELIXIR.NO - The national infrastructure for bioinformatics. NBS Contact Meeting . Norwegian Biochemical Society; Storefjell. 2017-01-19 - 2017-01-22.
Academic lecture

Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck. (2017) Aggregating RNA-Seq reads from multiple genes in KEGG metabolic pathways improves interpretability in gene expression pathway analysis. International Conference on Systems Biology ; Blacksburg, Virginia. 2017-08-06 - 2017-08-12.
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2017) Computational assessment of tissue heterogeneity in patient tissue samples reveals that cholesterol synthesis pathway genes in prostate cancer are consistently downregulated. BC2 Computational Biology Conference . Swiss Institute of Bioinformatics; Basel. 2017-09-12 - 2017-09-15.
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2017) Transcriptional downregulation of cholesterol synthesis pathway genes in prostate cancer. The 53rd Contact Meeting . NBS - Norsk Biokjemisk Selskap; Storefjell Resort Hotel, Gol. 2017-01-19.
Academic lecture

Rye, Morten Beck; Tessem, May-Britt; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena. (2017) Cholesterol synthesis pathway genes in prostate cancer are downregulated. 31st NUF Congress . Scandinavian Association of Urology; Odense. 2017-06-14 - 2017-06-16.

2016

Academic lecture

Bahrami, Shahram; Drabløs, Finn Sverre. (2016) Identification and analysis of genes in immediate-early response processes. NBS Contact Meeting ; 2016-01-21 - 2016-01-24.
Academic lecture

Drabløs, Finn Sverre. (2016) How to prepare genes for rapid activation. SocBiN Bioinformatics 2016 ; 2016-06-14 - 2016-06-16.
Academic lecture

Krokan, Hans Einar; Pettersen, Henrik Sahlin; Mjelle, Robin; Hegre, Siv Anita; Sætrom, Pål; Drabløs, Finn Sverre; Sarno, Antonio; Galashevskaya, Anastasia; Aas, Per Arne; Liabakk, Nina-Beate; Doseth, Berit; Slupphaug, Geir; Kavli, Bodil Merete. (2016) REGULATION OF BASE EXCISION REPAIR – CANONICAL AND NON-CANONICAL PROCESSING OF GENOMIC URACIL. 10th International Multiconference on Bioinformatics of Genome Regulation and Structure\Systems Biology . Russian Academy of Sciences, Siberian branch; Akademorodok, Novosibirsk. 2016-08-29 - 2016-09-03.
Lecture

Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn Sverre; Tessem, May-Britt. (2016) Transcriptional downregulation of cholesterol synthesis revealed as a hallmark for prostate cancer after adjustment for confounding stroma. ESUR16 - 23rd Meeting of the EAU Section of Urological Research . EAU- european Association of Urology; Parma. 2016-10-20 - 2016-10-22.
Poster

Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck. (2016) A novel non-canonical wnt signature associated with Gleason score, recurrence, metastases and metabolic alterations in prostate cancer. The 8th National PhD Conference in Medical Imaging ; 2016-11-21 - 2016-11-22.
Academic lecture

Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman; Sandve, Geir Kjetil; Hovig, Johannes Eivind. (2016) The Genomic HyperBrowser. European Conference on Computational Biology ; 2016-09-03 - 2016-09-07.

2015

Academic lecture

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2015) Global transcriptional patterns in high- and low-virulent shiga-toxin producing E. coli. The 9th triennial International Shiga (Verocytotoxin) Producing Escherichia coli Infections Symposium . VTEC Organizing Comittee; Boston. 2015-09-13 - 2015-09-16.
Poster

Lewin, Anna; Johansen, Jostein; Markussen, Sidsel; Josefsen, Kjell Domaas; Jasinovica, Svetlana; Wu, Cheng-Cang; Kotlar, Hans Kristian; Wentzel, Alexander; Drabløs, Finn Sverre; Valla, Svein. (2015) Isolation and genome sequencing of two Archaea species from a Norwegian deep sub-surface oil reservoir. ASM2015 . American Society for Microbiology; New Orleans. 2015-05-30 - 2015-06-02.
Poster

Sandsmark, Elise; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan; Viset, Trond; Richardsen, Elin; Drabløs, Finn; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck. (2015) Non-canonical Wnt5a-Fizzled2 signaling is associated with metabolic reprogramming and biochemical recurrence in human prostate cancer. ESUR-SBUR15 - The 11th World Congress on Urological Research ; Nijmegen. 2015-09-10 - 2015-09-12.

2014

Poster

Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2014) An overrepresentation analysis of human transcription factors. ISMB 2014 ; Boston. 2014-07-11 - 2014-07-15.
Academic lecture

Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn. (2014) From gene sets to properties; some potential pitfalls and tripwires. Informatics Seminar at UiB ; Bergen. 2014-12-11 - 2014-12-11.
Lecture

Drabløs, Finn; Nygård, Ståle; Hovig, Johannes Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge. (2014) ELIXIR - An infrastructure for bioinformatics. NBS Contact Meeting . NBS; Røros. 2014-01-23 - 2014-01-26.
Academic lecture

Drabløs, Finn; Sjursen, Wenche. (2014) A medical research infrastructure. COST Action BM1206 Meeting ; Barcelona. 2014-03-12 - 2014-03-12.
Poster

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2014) Comparative genomics of Stx prophages in HUS- and non-HUS associated shiga toxin-producing Escherichia coli. General Meeting of the American Society for Microbiology . American Society for Microbiology; Boston. 2014-05-17 - 2014-05-20.
Poster

Gabrielsen, Christina; Drabløs, Finn; Afset, Jan Egil. (2014) Identification of novel sigma- and transcription factors in genomes of pathogenic Escherichia coli. Bioinformatics 2014 . Society for Bioinformatics in Northern Europe (SocBiN); Oslo. 2014-06-11 - 2014-06-13.
Academic lecture

Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål; Sandvik, Arne Kristian; Drabløs, Finn; Sjursen, Wenche. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. COST Action BM1206 Meeting ; Leiden. 2014-09-04 - 2014-09-04.
Poster

Hansen, Maren Fridtjofsen; Steinsbekk, Kristin Solum; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Sjursen, Wenche; Drabløs, Finn. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. Translational genomics in biomedicine ; Barcelona. 2014-03-13 - 2014-03-14.
Poster

Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne; Drabløs, Finn; Afset, Jan Egil. (2014) Genomic comparison reveals heterogeneity among non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS). ASM General meeting 2014 . American Society for Microbiology; Boston. 2014-05-17 - 2014-05-20.
Poster

Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2014) Simplifying methods for adjusting tissue heterogeneity pinpoint genes responsible for altered metabolism in prostate cancer samples. ESUR 2014 . EAU Section of Urological Research (ESUR); Glasgow, Scotland. 2014-10-09 - 2014-10-11.
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt. (2014) Tissue heterogeneity and data integration in prostate cancer. Bioinformatics Network Seminar: Biological networks – from genes to populations . Program for Bioinformatikk (PBI); Sumhuset, Trondheim. 2014-12-08 - 2014-12-08.
Academic lecture

Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt. (2014) Subtype classification of prostate cancer. Onsdagsmøte, IKM . IKM; Kunnskapssenteret, St.Olav. 2014-01-15 - 2014-01-15.
Poster

Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair; Drabløs, Finn. (2014) Chromatin data integrated with a human reference atlas of experimentally defined promoters reveal repressed promoters located in active chromatin. SocBiN Bioinformatics 2014 . Society for Bioinformatics in Northern Europe (SocBiN); Oslo. 2014-06-11 - 2014-06-13.
Academic lecture

Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair; Drabløs, Finn. (2014) Repressed promoters in active chromatin. SocBiN Bioinformatics 2014 . Society for Bioinformatics in Northern Europe (SocBiN); Oslo. 2014-06-11 - 2014-06-13.
Poster

Sanabria, Adriana Maria; Chawla, Konika; Drabløs, Finn; Steigedal, Magnus; Mæland, Johan A.; Afset, Jan Egil. (2014) An attempt to elucidate the genes encoding R3,Z1 and Z2 surface exposed proteins from two streptococcus agalactiae strains from Zimbabwe. 2014 XIX Lancefield International Symposium on Streptococci and Streptococcal Diseases . SADEBAC, aam(asociacion argentina de microbiologia); Buenos Aires. 2014-11-09 - 2014-11-12.

2013

Poster

Kornacker, Karl; Rye, Morten Beck; Håndstad, Tony; Drabløs, Finn. (2013) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. 5th StatSeq Workshop . COST TD801 StatSeq; Helsinki. 2013-04-24 - 2013-04-26.
Poster

Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein; Wentzel, Alexander. (2013) Oil reservoir metagenomes for use in bioprospecting using functional screening and DNA sequence-based data mining. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) ; Rio de Janeiro. 2013-08-25 - 2013-08-28.
Academic lecture

Lewin, Anna; Johansen, Jostein; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein; Wentzel, Alexander. (2013) Oil reservoir metagenomics for use in microbial community characterization and bioprospecting. 99th annual meeting of the Southeastern Branch of the American Society for Microbiology ; Auburn, AL. 2013-11-07 - 2013-11-09.
Academic lecture

Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Comparative metagenomics of deeply buried oil reservoirs suggests very slow rates of evolution in the deep biosphere. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) ; Rio de Janeiro. 2013-08-25 - 2013-08-28.
Poster

Lewin, Anna; Wentzel, Alexander; Johansen, Jostein; Drabløs, Finn; Kotlar, Hans Kristian; Valla, Svein. (2013) Bioprospecting using oil reservoir material - different approaches for search of new enzymes. Bioprosp 13 ; Tromsø. 2013-02-20 - 2013-02-22.
Lecture

Lærdahl, Jon Kristen; Nygård, Ståle; Jonassen, Inge; Hovig, Johannes Eivind; Petersen, Kjell; Drabløs, Finn; Willassen, Nils Peder; Våge, Dag Inge. (2013) The national technology platform for bioinformatics. NBS - Contact Meeting 2013 . Norwegian Biochemical Society,; 2013-01-31 - 2013-02-03.
Poster

Pena-Diaz, Javier; Hegre, Siv Anita; Anderssen, Endre; Aas, Per Arne; Mjelle, Robin; Gilfillan, Gregor Duncan; Lyle, Robert; Drabløs, Finn; Krokan, Hans Einar; Sætrom, Pål. (2013) Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Norwegian Biochemical Society Contact Meeting . Norwegian Biochemical Society; Lillehammer. 2013-01-31 - 2013-02-03.
Academic lecture

Roten, Linda Tømmerdal; Johnson, Matthew; Thomsen, Liv Cecilie Vestrheim; Gundersen, Astrid S.; Solberg, Per; Tollaksen, Kjersti; Lyslo, Ingvill; Tappert, Christian; Odland, Maria Lisa; Strand, Kristin Melheim; Fenstad, Mona H.; Drabløs, Finn; Skorpen, Frank; Moses, Eric K; Austgulen, Rigmor; Bjørge, Line. (2013) A preeclampsia genome-wide linkage scan in Norwegian families. European Congress of the International Society for the Study of Hypertension in Pregnancy ; Tromsø. 2013-06-12 - 2013-06-14.
Academic lecture

Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Comparative Metagenomics and Bioprospecting of Oil Reservoirs. Second International Conference on Functional Metagenomics. . International Society for Functionals Metagenomics; Pretoria. 2013-06-02 - 2013-06-05.
Academic lecture

Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Metagenome analysis of oil reservoir microbial communities and its potential in bioprospecting for new industrial biocatalysts. 3rd Annual World Congress of Marine Biotechnology ; Hangzhou. 2013-09-23 - 2013-09-25.

2012

Academic lecture

Drabløs, Finn. (2012) Computer infrastructure for bioinformatics. IT-konferansen Hell ; Værnes. 2012-04-12 - 2012-04-13.
Academic lecture

Drabløs, Finn; Klepper, Kjetil. (2012) MotifLab: A tools and data integration workbench for motif discovery and regulatory sequence analysis. 4th StatSeq Workshop . COST Action TD0801; Verona. 2012-04-18 - 2012-04-19.
Academic lecture

Drabløs, Finn; Kornacker, Karl; Rye, Morten Beck; Håndstad, Tony. (2012) The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. Norwegian Bioinformatics Forum ; Trondheim. 2012-10-18 - 2012-10-19.
Academic lecture

Drabløs, Finn; Rye, Morten Beck; Klepper, Kjetil; Sætrom, Pål. (2012) Definition and analysis of gene sets from time series data. FANTOM time-courses meeting . FANTOM RIKEN; Yokohama. 2012-10-29 - 2012-11-02.

2011

Poster

Rye, Morten Beck; Drabløs, Finn; Sætrom, Pål; Håndstad, Tony. (2011) Epigenetic Influence on Cell-type specific peaks from ChIP-Seq data. Histone code: Fact or fiction? . Keystone Symposia; Midway, Utah. 2011-01-10 - 2011-01-15.
Poster

Rye, Morten Beck; Sætrom, Pål; Håndstad, Tony; Drabløs, Finn. (2011) Clusters of ChIP-Seq defined transcription factor binding sites map regulatory elelemnts in the human genome. Unanswered Questions in Transcription, Annual international Symposium . Cambridge Research Institute; Cambridge. 2011-11-04 - 2011-11-05.

2010

Poster

Drabløs, Finn; Bratbergsengen, Kjell. (2010) Programme for Bioinformatics at NTNU. 22nd conference of The Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.
Poster

Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind; Jonassen, Inge. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. 22nd conference of The Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.
Academic lecture

Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Vågbø, Cathrine Broberg; Müller, rebecca; Catterall, Tara C; Liabakk, Nina-Beate; Slupphaug, Geir; Drabløs, Finn; Krokan, Hans Einar; Otterlei, Marit. (2010) Identification of a new and widespread and functionally important PCNA-binding motif. 6th Norwegian National Proteomics Meeting . NTNU; trondheim. 2010-12-09 - 2010-12-10.
Academic lecture

Nesse, Live Lingaas; Drabløs, Finn; Olsaker, Ingrid; Håkerud, Monika; Vestby, Lene Karine; Djønne, Berit K. (2010) Invasion of human epithelial HEp-2 cells by Salmonella is affected by N-acylhomoserine lactone quorum sensing signals. I3S International symposium on Salmonella and salmonellosis ; Saint-Malo. 2010-06-28 - 2010-06-30.
Poster

Welch, Lonnie; Schbath, Sophie; Drabløs, Finn. (2010) Toward a unified framework for motif discovery methods. 18th Annual International Conference on Intelligent Systems for Molecular Biology ; 2010-07-11 - 2010-07-13.

2009

Poster

Puntervoll, Pål; Johansen, Jostein; Mattingsdal, Morten; Hovig, Eivind; Drabløs, Finn; Jonassen, Inge. (2009) The FUGE Bioinformatics platform - A central platform in the FUGE2 period. 45. NBS Contact Meeting . Norwegian Biochemical Society; Røros. 2009-01-29 - 2009-02-01.
Academic lecture

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2009) Bioinformatics for downstream data analysis. Metagenome Meeting ; Oslo. 2009-05-25 - 2009-05-25.
Academic lecture

Drabløs, Finn. (2009) Analysing eukaryote gene regulation: in vivo, in vitro, in silico, and back again. Formal Methods in Systems Biology ; Dagstuhl. 2009-02-23 - 2009-02-27.
Academic lecture

Drabløs, Finn. (2009) Computational discovery of composite motifs in DNA. 10th Annual Bioinformatics Open Source Conference ; Stockholm. 2009-06-27 - 2009-06-28.
Academic lecture

Drabløs, Finn; Hovig, Eivind; Puntervoll, Pål; Jonassen, Inge. (2009) How can bioinformatics drive and support the hunt for drug targets. 45. NBS Contact Meeting . Norwegian Biochemical Society; Røros. 2009-01-29 - 2009-02-01.
Academic lecture

Gilljam, Karin Margaretha; Feyzi, Emadoldin; Aas, Per Arne; Westbye, Marianne; Sousa, Mirta; Müller, Rebekka; Catterall, Tara C; Vågbø, Cathrine Broberg; Liabakk, Nina-Beate; Slupphaug, Geir; Drabløs, Finn; Krokan, Hans Einar; Otterlei, Marit. (2009) The human AlkB homologs 1,2 and 3, localisation and tentative functions. 2nd Erling Seeberg Symposium on DNA Repair . Rikshospitalet-Radiumhospitalet og Universitetet i Oslo; 2009-06-20 - 2009-06-25.

2008

Academic lecture

Drabløs, Finn; Hovig, Eivind; Puntervoll, Pål; Jonassen, Inge. (2008) The FUGE Bioinformatics Platform - A central platform in the FUGE2 period. 44th Contact Meeting . Norwegian Biochemical Society; Lillehammer. 2008-01-17 - 2008-01-20.
Academic lecture

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology ; Rostock. 2008-10-12 - 2008-10-15.
Poster

Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology ; Rostock. 2008-10-12 - 2008-10-15.
Academic lecture

Drabløs, Finn. (2008) BiGR - Bioinformatics and gene regulation. Tirsdagsforedrag . Institutt for kreftforskning og molekylær medisin; Trondheim. 2008-05-20 - 2008-05-20.
Academic lecture

Drabløs, Finn. (2008) Bioinformatics. NOTUR evaluering . Norges forskningsråd; Trondheim. 2008-06-10 - 2008-06-10.
Academic lecture

Drabløs, Finn. (2008) Bioinformatics and gene regulation. Tirsdagsmøte for DMF, NTNU og St. Olavs Hospital . IKM; Trondheim. 2008-05-20.
Academic lecture

Drabløs, Finn. (2008) Bioinformatics and gene regulation. FUGE Bioinformatics Information Meeting . FUGE Bioinformatics; Trondheim. 2008-04-22.
Poster

Drabløs, Finn. (2008) Bioinformatics and gene regulation. Norwegian Bioinformatics Forum . FUGE Bioinformatics; Bergen. 2008-10-09 - 2008-10-10.
Popular scientific lecture

Drabløs, Finn. (2008) Bioinformatics at NTNU. Orientering til engelske forskningsjournalister . Access Modt-Norge; Trondheim. 2008-11-03 - 2008-11-03.
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud; Johansen, Jostein; Schwalie, Petra Catalina. (2008) Gene and genome properties. Norwegian Bioinformatics Forum . FUGE Bioinformatics; Bergen. 2008-10-09 - 2008-10-10.
Poster

Schwalie, Petra Catalina; Drabløs, Finn. (2008) genePI: improved prediction of promoter regions by using a feature-based classification strategy. European Conference on Computational Biology ; Cagliari. 2008-09-22 - 2008-09-26.

2007

Academic lecture

Drabløs, Finn. (2007) Bioinformatics in Trondheim. Internseminar om genotyping . Institutt for kreftforskning og molekylær medisin; Trondheim. 2007-01-11 - 2007-01-11.
Academic lecture

Drabløs, Finn. (2007) Computational methods for finding transcription factor binding sites: How bad are they?. Tirsdagsforelesning . Institutt for kreftforskning og molekylærmedisin; Trondheim. 2007-03-13 - 2007-03-13.
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2007) Bioinformatic mapping of viral AlkB domains. Instituttseminar . Institutt for bioteknologi, NTNU; Trondheim. 2007-02-14 - 2007-02-14.
Academic lecture

Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard; Drabløs, Finn. (2007) Improved benchmarks for computational motif discovery. Norwegian Biochemical Society 43. Contact Meeting . Norsk Biokjemisk Selskap; Lillehammer. 2007-02-01 - 2007-02-04.

2006

Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Computational Systems Bioinformatics, CSB 2006, ; Stanford, CA. 2006-08-14 - 2006-08-18.
Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Talstad, Vivi; Aas, Per Arne; Drabløs, Finn; Krokan, Hans Einar; Tainer, John A.; Slupphaug, Geir. (2006) Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. Erling Seeberg Symposium on DNA Repair ; 2006-05-28 - 2006-06-02.
Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) False discovery rates in identifying functional DNA motifs. BIBE 2006 - IEEE 6th Symposium on Bioinformatics and Bioengineering ; Washington DC. 2006-10-16 - 2006-10-18.
Academic lecture

Abul, Osman; Sandve, Geir Kjetil; Drabløs, Finn. (2006) TScan: A two-step de novo motif discovery method. Third Annual RECOMB Satellite Workshop on Regulatory Genomics ; National University of Singapore. 2006-07-17 - 2006-07-18.
Academic lecture

Drabløs, Finn. (2006) Bioinformatikk som redskap for å analysere data fra biobanker. Fredagsmøte . St. Olavs hospital; Trondheim. 2006-10-06 - 2006-10-06.
Academic lecture

Drabløs, Finn. (2006) FUGE Bioinformatics. Veien mot FUGE II . FUGE Midt-Norge; Hell. 2006-03-28 - 2006-03-29.
Academic lecture

Drabløs, Finn. (2006) Modelling of gene regulation as a computational challenge. Fagseminar mellom NTNU og IBM . NTNU; Trondheim. 2006-12-01 - 2006-12-01.
Academic lecture

Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman; Drabløs, Finn. (2006) Accelerating motif discovery: motif matching on parallel hardware. WABI 2006 - 6th Workshop on Algorithms in Bioinformatics ; Zürich. 2006-09-11 - 2006-09-13.
Academic lecture

Sandve, Geir Kjetil; Stenersen, Kristoffer; Walseng, Vegard; Lekang, Øystein; Klepper, Kjetil; Abul, Osman; Hveem, Tarjei S; Bratlie, Marit Skyrud; Drabløs, Finn. (2006) An integrated approach to motif discovery in DNA sequences. The Norwegian Biochemical Society 42. Contact Meeting . Norsk Biokjemisk Selskap; Storefjell. 2006-01-19 - 2006-01-22.
Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Aas, Per Arne; Drabløs, Finn; Krokan, Hans Einar; Tainer, John A; Slupphaug, Geir. (2006) Crystal structure of hABH3 DNA/RNA demethylase reveals a novel active-site leucine oxidation. The Norwegian Biochemical Society 42. Contact Meeting . Norwegian Biochemical Society (NBS); Storefjell, Storefjell Hotell. 2006-01-19 - 2006-01-22.
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2006) Design of selective protein inhibitors using PASSA and PAS-Dock. 231st American Chemical Society National Meeting . American Chemical Society; Atlanta, GA. 2006-03-26 - 2006-03-30.

2005

Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2005) Bioinformatic mapping of viral AlkB-domains. Biochemical Contact Meeting . Norwegian Biochemical Society; Tromsø. 2005-01-13 - 2005-01-16.
Academic lecture

Sandve, Geir Kjetil; Drabløs, Finn. (2005) Generalized Composite Motif Discovery. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES ; Melbourne. 2005-09-14 - 2005-09-16.
Poster

Sundheim, Ottar; Vågbø, Cathrine Broberg; Bjørås, Magnar; Sousa, Mirta; Aas, Per Arne; Drabløs, Finn; Krokan, Hans Einar; Tainer, John A; Slupphaug, Geir. (2005) Structure of the hABH3 DNA demethylase implicates an oxidized leucine residue in catalysis. 2nd ESF Functional Genomics and disease ; 2005-09-06.

2004

Academic lecture

Andersson, Helge Ingolf; Drabløs, Finn; Drange, Helge; Elster, Anne Cathrine; Omre, Henning; Pettersen, Bjørnar; Rønquist, Einar. (2004) Position Paper Computional Science. InfoSam2020 . NTNU; Trondheim. 2004-04-19 - 2004-04-20.
Academic lecture

Drabløs, Finn. (2004) Homology modelling of potential drug targets. Norwegian Bioinformatics Forum Meeting ; Oslo. 2004-05-02 - 2004-05-03.
Academic lecture

Drabløs, Finn; Bratlie, Marit Skyrud. (2004) The optimal multiple sequence alignment: fact or fiction?. 40th Biochemical Contact Meeting . Norwegian Biochemical Society; Quality Hotell Hafjell. 2004-01-15 - 2004-01-18.
Academic lecture

Drabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. InfoSam2020 . NTNU; Trondheim. 2004-04-19 - 2004-04-20.
Academic lecture

Bjerkan, Tonje Marita; Bender, Carol; Ertesvåg, Helga; Drabløs, Finn; Fakhr, Mohamed K.; Preston, Lori A.; Skjåk-Bræk, Gudmund; Valla, Svein. (2004) The Pseudomonas syringae genome encodes a combined Mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates. National Conference on Microbial Sciences and Technology . FUGE; Nesbu. 2004-08-29 - 2004-08-31.

2003

Poster

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Design of a Selective Inhibitor of Tyrosine Kinase 2. European Conference on Computational Biology . [Mangler data]; Paris. 2003-09-30.
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Protein Alpha Shape Similarity Analysis (PASSA): Application in the design of a selective inhibitor of Tyrosine kinase 2. Current trends in structure-aided drug design . [Mangler data]; Lund, Sverige. 2003-05-24.
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2003) Protein Alpha Shape Similarity Analysis (PASSA): Application in the design of a selective inhibitor of Tyrosine kinase 2. 15. Norske kjemometrisymposium . [Mangler data]; Ål. 2003-03-19.

2002

Academic lecture

Birkeland, O.R; Fjeldstad, S.H; Humberset, H; Nedland, M; Snøve, O; Svingen, B; Sætrom, P; Halaas, Øyvind; Drabløs, Finn; Krokan, Hans Einar; Skorpen, Frank. (2002) A new method for unbiased and automatic data analysis and hypothesis generation. 38.Biokjemiske kontaktmøte Functional genomics-the mosaics of life . [Mangler data]; Røros. 2002-01-20.
Academic lecture

Tøndel, Kristin; Anderssen, Endre; Drabløs, Finn. (2002) Evaluation of the tyrosine kinase domain of Tyk2 as a potential drug target. XVIIth International Symposium on Medicinal Chemistry . [Mangler data]; Barcelona, Spain. 2002-09-05.

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Finn Drabløs

Finn Drabløs

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