Vladimir Mironov
Publications
2020
-
Puig, Rafael Riudavets;
Holmås, Stian;
Mironov, Vladimir;
Kuiper, Martin.
(2020)
Network Building with the Cytoscape BioGateway App Explained in Five Use Cases
.
Current Protocols in Bioinformatics
Academic article
2019
-
Holmås, Stian;
Riudavets Puig, Rafael;
Acencio, Marcio Luis;
Mironov, Vladimir;
Kuiper, Martin.
(2019)
The Cytoscape BioGateway App: explorative network building from an RDF store.
Bioinformatics
Academic article
2017
-
Nordgård, Anna Synnøve Røstad;
Bergland, Wenche Hennie;
Vadstein, Olav;
Mironov, Vladimir;
Bakke, Rune;
Østgaard, Kjetill.
(2017)
Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea.
Scientific Reports
Academic article
2014
-
Venkatesan, Aravind;
Tripathi, Sushil;
Sanz de Galdeano, Alejandro;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Academic article
-
Mironov, Vladimir;
Kuiper, Martin;
Ekseth, Ole Kristian.
(2014)
OrthAgogue: An agile tool for the rapid prediction of orthology relations.
Bioinformatics
Academic article
-
Blondé, Ward;
Antezana, Erick;
Mironov, Vladimir;
Schulz, Stefan;
Kuiper, Martin;
De baets, Bernard.
(2014)
Using the relation ontology Metarel for modelling Linked Data as multi-digraphs.
Semantic Web Journal
Academic article
2013
-
Kuiper, Martin;
Antezana, Erick;
Mironov, Vladimir.
(2013)
Cell Cycle Ontology (CCO).
Website (informational material)
-
Antezana, Erick;
Mironov, Vladimir;
Kuiper, Martin.
(2013)
The emergence of Semantic Systems Biology.
New Biotechnology
Academic article
2012
-
Mironov, Vladimir;
Seethappan, Nirmala;
Blondé, Ward;
Antezana, Erick;
Splendiani, Andrea;
Kuiper, Martin.
(2012)
Gauging triple stores with actual biological data.
BMC Bioinformatics
Academic article
-
Kuiper, Martin;
Venkatesan, Aravind;
Antezana, Erick;
Vercruysse, Steven;
Mironov, Vladimir;
Blondé, Ward.
(2012)
Putting Semantics in Systems Biology.
META
Article in business/trade/industry journal
2011
-
Blondé, Ward;
Mironov, Vladimir;
Venkatesan, Aravind;
Antezana, Erick;
De baets, Bernard;
Kuiper, Martin.
(2011)
Reasoning with bio-ontologies: using relational closure rules to enable practical querying.
Bioinformatics
Academic article
-
Mironov, Vladimir;
Antezana, Erick;
Egaña, Mikel;
Blondé, Ward;
De baets, Bernard;
Kuiper, Martin.
(2011)
Flexibility and utility of the cell cycle ontology.
Applied Ontology
Academic article
2010
-
Antezana, Erick;
Venkatesan, Aravind;
Mungall, Chris;
Mironov, Vladimir;
Kuiper, Martin.
(2010)
ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.
BMC Bioinformatics
Academic article
2009
-
Antezana, Erick;
Blondé, Ward;
Egaña, Mikel;
Rutherford, Alistair;
Stevens, Robert;
De baets, Bernard.
(2009)
BioGateway: A Semantic Systems Biology Tool for the Life Sciences.
BMC Bioinformatics
Academic article
-
Antezana, E;
Kuiper, Martin;
Mironov, Vladimir.
(2009)
Biological knowledge management: the emerging role of the Semantic Web technologies.
Briefings in Bioinformatics
Academic literature review
Journal publications
-
Puig, Rafael Riudavets;
Holmås, Stian;
Mironov, Vladimir;
Kuiper, Martin.
(2020)
Network Building with the Cytoscape BioGateway App Explained in Five Use Cases
.
Current Protocols in Bioinformatics
Academic article
-
Holmås, Stian;
Riudavets Puig, Rafael;
Acencio, Marcio Luis;
Mironov, Vladimir;
Kuiper, Martin.
(2019)
The Cytoscape BioGateway App: explorative network building from an RDF store.
Bioinformatics
Academic article
-
Nordgård, Anna Synnøve Røstad;
Bergland, Wenche Hennie;
Vadstein, Olav;
Mironov, Vladimir;
Bakke, Rune;
Østgaard, Kjetill.
(2017)
Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea.
Scientific Reports
Academic article
-
Venkatesan, Aravind;
Tripathi, Sushil;
Sanz de Galdeano, Alejandro;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Academic article
-
Mironov, Vladimir;
Kuiper, Martin;
Ekseth, Ole Kristian.
(2014)
OrthAgogue: An agile tool for the rapid prediction of orthology relations.
Bioinformatics
Academic article
-
Blondé, Ward;
Antezana, Erick;
Mironov, Vladimir;
Schulz, Stefan;
Kuiper, Martin;
De baets, Bernard.
(2014)
Using the relation ontology Metarel for modelling Linked Data as multi-digraphs.
Semantic Web Journal
Academic article
-
Antezana, Erick;
Mironov, Vladimir;
Kuiper, Martin.
(2013)
The emergence of Semantic Systems Biology.
New Biotechnology
Academic article
-
Mironov, Vladimir;
Seethappan, Nirmala;
Blondé, Ward;
Antezana, Erick;
Splendiani, Andrea;
Kuiper, Martin.
(2012)
Gauging triple stores with actual biological data.
BMC Bioinformatics
Academic article
-
Kuiper, Martin;
Venkatesan, Aravind;
Antezana, Erick;
Vercruysse, Steven;
Mironov, Vladimir;
Blondé, Ward.
(2012)
Putting Semantics in Systems Biology.
META
Article in business/trade/industry journal
-
Blondé, Ward;
Mironov, Vladimir;
Venkatesan, Aravind;
Antezana, Erick;
De baets, Bernard;
Kuiper, Martin.
(2011)
Reasoning with bio-ontologies: using relational closure rules to enable practical querying.
Bioinformatics
Academic article
-
Mironov, Vladimir;
Antezana, Erick;
Egaña, Mikel;
Blondé, Ward;
De baets, Bernard;
Kuiper, Martin.
(2011)
Flexibility and utility of the cell cycle ontology.
Applied Ontology
Academic article
-
Antezana, Erick;
Venkatesan, Aravind;
Mungall, Chris;
Mironov, Vladimir;
Kuiper, Martin.
(2010)
ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.
BMC Bioinformatics
Academic article
-
Antezana, Erick;
Blondé, Ward;
Egaña, Mikel;
Rutherford, Alistair;
Stevens, Robert;
De baets, Bernard.
(2009)
BioGateway: A Semantic Systems Biology Tool for the Life Sciences.
BMC Bioinformatics
Academic article
-
Antezana, E;
Kuiper, Martin;
Mironov, Vladimir.
(2009)
Biological knowledge management: the emerging role of the Semantic Web technologies.
Briefings in Bioinformatics
Academic literature review
INFORMASJONSMATR
-
Kuiper, Martin;
Antezana, Erick;
Mironov, Vladimir.
(2013)
Cell Cycle Ontology (CCO).
Website (informational material)
Media
2019
-
PosterHolmås, Stian; Mironov, Vladimir; Kuiper, Martin. (2019) Network building in Cytoscape using the BioGateway App. Albert Burger, Ronald Cornet SWAT4(HC)LS 2019: Semantic Web Applications and Tools for Healthcare and Life Sciences , Edinburgh 2019-12-09 - 2019-12-12
2016
-
PosterBakke, Ingrid; Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Østgaard, Kjetill. (2016) Microbial community dynamics in anaerobic digestion at high ammonia concentrations. International Society of Microbial Ecology International Symposium on Microbial Ecology ISME 16 , Montreal 2016-08-21 - 2016-08-26
2014
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PosterKuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Sanz de Galdeano, Alejandro. (2014) The gene expression knowledge base. Stig Omholt / VPH consortium Virtual Physiological Human Conference 2014 , Trondheim 2014-09-09 - 2014-09-12
2012
-
PosterHollunder, Jens; Mironov, Vladimir; Antezana, Erick; Hoehndorf, Robert; Kuiper, Martin. (2012) Profiling of Semantically Annotated Proteins. SWAT4LS Semantic Web Applications and Tools for Life Sciences 2012 , Paris 2012-11-28 - 2012-11-30
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Academic lectureVenkatesan, Aravind; Mironov, Vladimir; Kuiper, Martin. (2012) Towards an integrated knowledge system for capturing gene expression events. Stefan Schulz, Catalina Martínez, Markus Kreuzthaler 3rd International Conference on Biomedical Ontology (ICBO 2012) , Graz 2012-07-21 - 2012-07-25
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PosterVenkatesan, Aravind; Antezana, Erick; Blondé, Ward; Vercruysse, Steven; Mironov, Vladimir; Kuiper, Martin. (2012) Putting Semantics in Systems Biology. Norwegian Bioinformatics Forum NTNU Bioinformatics Network Seminar 2012 Norwegian Bioinformatics Forum 2012 , Trondheim 2012-10-18 - 2012-10-19
2011
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Academic lectureMironov, Vladimir; Venkatesan, Aravind; Kuiper, Martin. (2011) RDF Foundry - a call for a community effort to harmonize triple store practices. BioHackathon 2011 , Kyoto University 2011-08-20 - 2011-08-26
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Academic lectureVenkatesan, Aravind; Blondé, Ward; Antezana, Erick; Skillingstad, Mats Gløer Løkås; Marshall, Scott M; De baets, Bernard. (2011) The RDF Foundry: Call for an initiative to build enhanced RDF resources for biological data integration. WIMS: International Conferences on Web Intelligence, Mining and Semantics. , Sogndal 2011-05-25 - 2011-05-27
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Academic lectureAntezana, Erick; Blondé, Ward; Venkatesan, Aravind; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin. (2011) Semantic SB: enablng integrative biology via SW technologies. WIMS: International Conferences on Web Intelligence, Mining and Semantics. , Sogndal 2011-05-25 - 2011-05-27
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PosterTripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir. (2011) Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. ISMB 2011 Bio-Ontologies 2011 , Vienna 2011-07-15 - 2011-07-16