Astrid Lægreid
About
Research interest
Systems biology and its translations to new biomedical approaches.
The Knowledge Commons as foundation for systems biology.
Wide interdisciplinarity spanning humanities, science and technology as a quality and relevance enhancing research mode.
Current research projects
Leader: "Rational development of anti-cancer drug combinations"
Partner: "Crossover Research" and "COLOSYS"
Background
Lægreid studied biochemistry, mathematics and musicology before doing a master (1982) and PhD (1985) in biochemistry at the University of Oslo. During her post doctor, Lægreid entered the field of molecular biology which she applied in cancer research. Lægreid played a central role in the establishment of the national functional genomics research programme where she also headed the NTNU platform-node of the National Consortium of Microarray Technology. Lægreid has pursued epistemic and socio-ethical questions as a central part of her efforts to transform her cancer research strategies from traditional molecular cell biology into a systems biology approach.
Current position: Professor in functional genomics, Department of Cancer Research and Molecular Medicine, NTNU; Past university leadership positions: Vice Dean, Research, of the Medical faculty, NTNU, 1996-1999; Prorector, Research and Innovation of NTNU, 2005-2009
Publications
2023
-
Acencio, Marcio Luis;
Vázquez, Miguel;
Chawla, Konika;
Lægreid, Astrid Renner;
Kuiper, Martin.
(2023)
TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.
Nucleic Acids Research (NAR)
Academic article
-
Müller-Dott, Sophia;
Tsirvouli, Eirini;
Vazquez, Miguel;
Flores, Ricardo O Ramirez;
Badia-I-Mompel, Pau;
Fallegger, Robin;
Türei, Dénes;
Lægreid, Astrid Renner;
Saez-Rodriguez, Julio.
(2023)
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities.
Nucleic Acids Research (NAR)
Academic article
-
Heck, Kathleen;
Lindholm, Håvard Takle;
Niederdorfer, Barbara;
Tsirvouli, Eirini;
Kuiper, Martin;
Flobak, Åsmund;
Lægreid, Astrid Renner;
Thommesen, Liv.
(2023)
Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.
Proteomes
Academic article
2022
-
Vazquez Garcia, Miguel;
Krallinger, Martin;
Leitner, Florian;
Kuiper, Martin;
Valencia, Alfonso;
Lægreid, Astrid.
(2022)
ExTRI: Extraction of transcription regulation interactions from literature.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
-
Kuiper, Martin;
Bonello, Joseph;
Fernández-Breis, Jesualdo Tomás;
Bucher, Philipp;
Futschik, Matthias E;
Gaudet, Pascale;
Kulakovskiy, Ivan V.;
Licata, Luana;
Logie, Colin;
Lovering, Ruth C..
(2022)
The gene regulation knowledge commons: the action area of GREEKC.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
2021
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Cortés, Belén Juanes;
Vera-Ramos, José Antonio;
Lovering, Ruth C.;
Gaudet, Pascale;
Lægreid, Astrid;
Logie, Colin;
Schulz, Stefan;
Roldán-García, María del Mar;
Kuiper, Martin;
Fernández-Breis, Jesualdo Tomás.
(2021)
Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
-
Carbon, Seth J.;
Douglass, Eric;
Good, Benjamin M;
Unni, Deepak R;
Harris, Nomi L.;
Mungall, Christopher J.;
Basu, Siddartha;
Chisholm, Rex L.;
Dodson, Robert J.;
Hartline, Eric.
(2021)
The Gene Ontology resource: enriching a GOld mine.
Nucleic Acids Research (NAR)
Academic article
-
Lovering, Ruth C.;
Gaudet, Pascale;
Acencio, Marcio Luis;
Ignatchenko, Alex;
Jolma, Arttu;
Fornes, Oriol;
Kuiper, Martin;
Kulakovskiy, Ivan V.;
Lægreid, Astrid;
Martin, Maria J..
(2021)
A GO catalogue of human DNA-binding transcription factors.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
-
Gaudet, Pascale;
Logie, Colin;
Lovering, Ruth C.;
Kuiper, Martin;
Lægreid, Astrid;
Thomas, Paul D..
(2021)
Gene Ontology representation for transcription factor functions.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
2020
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Niederdorfer, Barbara;
Touré, Vasundra;
Vazques, Miguel;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.
Frontiers in Physiology
Academic article
-
Folkesson, Evelina;
Niederdorfer, Barbara;
To, Vu;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids.
Scientific Reports
Academic article
-
Nydal, Rune;
Bennett, Gaymon;
Kuiper, Martin;
Lægreid, Astrid.
(2020)
Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.
Medicine, Health care and Philosophy
Academic article
-
Folkesson, Evelina;
Niederdorfer, Barbara;
Nakstad, Vu To;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids (Scientific Reports, (2020), 10, 1, (11574), 10.1038/s41598-020-68441-0).
Scientific Reports
Corrigendum
-
Touré, Vasundra;
Vercruysse, Steven;
Acencio, Marcio Luis;
Lovering, Ruth C.;
Orchard, Sandra;
Bradley, Glyn;
Casals-Casas, Cristina;
Chaouiya, Claudine;
del-Toro, Noemi;
Flobak, Åsmund.
(2020)
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST).
Bioinformatics
Academic article
2019
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Carbon, Seth J.;
Douglass, E;
Dunn, N;
Good, B;
Harris, NL;
Lewis, SE;
Mungall, CJ;
Basu, S;
Chisholm, RL;
Dodson, RJ.
(2019)
The Gene Ontology Resource: 20 years and still GOing strong.
Nucleic Acids Research (NAR)
Academic article
-
Perfetto, Livia;
Acencio, Marcio Luis;
Bradley, Glyn;
Cesareni, Gianni;
Toro, Noemi del;
Fazekas, David;
Hermjakob, Henning;
Korcsmaros, Tamas;
Kuiper, Martin;
Lægreid, Astrid.
(2019)
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.
Bioinformatics
Academic article
-
Flobak, Åsmund;
Niederdorfer, Barbara;
To, Vu;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid.
(2019)
A high-throughput drug combination screen of targeted small molecule inhibitors in cancer cell lines.
Scientific Data
Academic article
-
Efstathiou, Sophia;
Nydal, Rune;
Lægreid, Astrid;
Kuiper, Martin.
(2019)
Scientific knowledge in the age of computation: Explicated, computable and manageable?.
Theoria. An international Journal of Theory, History and Foundations of Science
Academic article
-
Vera-Ramos, Jose Antonio;
Juanes-Cortes, Belen;
Fernández-Breis, Jesualdo Tomás;
Gaudet, Pascale;
Kuiper, Martin;
Lægreid, Astrid;
Logie, Colin;
Roldan-Garcia, Maria del Mar;
Schulz, Stefan.
(2019)
An example of multimodal biological knowledge representation.
CEUR Workshop Proceedings
Academic article
-
Menden, Michael Patrick;
Wang, Dennis;
Mason, Mike J.;
Szalai, Bence;
Bulusu, Krishna C.;
Guan, Yuanfang;
Flobak, Åsmund;
Kuiper, Martin;
Lægreid, Astrid;
Thommesen, Liv.
(2019)
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Nature Communications
Academic article
2017
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Flobak, Åsmund;
Vazquez Garcia, Miguel;
Lægreid, Astrid;
Valencia, Alfonso.
(2017)
CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.
Bioinformatics
Academic article
2016
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Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation
Academic article
2015
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Flobak, Åsmund;
Baudot, Anaïs;
Remy, Elisabeth;
Thommesen, Liv;
Thieffry, Denis;
Kuiper, Martin;
Lægreid, Astrid.
(2015)
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Computational Biology
Academic article
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology
Academic article
2014
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Orchard, Sandra;
Ammari, M;
Aranda, B;
Breuza, L;
Briganti, L;
Broackes-Carter, F;
Campbell, NH;
Chavali, G;
Chen, C;
Del-Toro, N.
(2014)
The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases.
Nucleic Acids Research (NAR)
Academic article
-
Selvik, Linn-Karina M.;
Rao, Shalini;
Steigedal, Tonje;
Haltbakk, Ildri;
Misund, Kristine;
Bruland, Torunn;
Prestvik, Wenche S;
Lægreid, Astrid;
Thommesen, Liv.
(2014)
Salt-inducible kinase 1 (SIK1) is induced by gastrin and inhibits migration of gastric adenocarcinoma cells.
PLOS ONE
Academic article
-
Venkatesan, Aravind;
Tripathi, Sushil;
Galdeano, Alejandro Sanz de;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir;
Kuiper, Martin.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Academic article
2013
-
Feuerherm, Astrid Jullumstrø;
Jørgensen, Katarina Mariann;
Sommerfelt, Randi Magnus;
Eidem, Live Egeland;
Lægreid, Astrid;
Johansen, Berit.
(2013)
Platelet-activating factor induces proliferation in differentiated keratinocytes.
Molecular and Cellular Biochemistry
Academic article
-
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Flatberg, Arnar;
Steigedal, Tonje;
Misund, Kristine;
Anderssen, Endre;
Doseth, Berit;
Langaas, Mette;
Tripathi, Sushil;
Beisvag, Vidar.
(2013)
The duration of gastrin treatment affects global gene expression and molecular responses involved in ER stress and anti-apoptosis.
BMC Genomics
Academic article
-
Tripathi, Sushil;
Christie, KR;
Balakrishnan, Ravin;
Huntley, R;
Hill, DP;
Thommesen, Liv;
Blake, JA;
Kuiper, Martin;
Lægreid, Astrid.
(2013)
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Database: The Journal of Biological Databases and Curation
Academic article
-
Misund, Kristine;
Selvik, Linn-Karina M.;
Rao, Shalini;
Nørsett, Kristin Gabestad;
Bakke, Ingunn;
Sandvik, Arne;
Lægreid, Astrid;
Bruland, Torunn;
Prestvik, Wenche S;
Thommesen, Liv.
(2013)
NR4A2 is regulated by Gastrin and involved in gastrin-induced migration and invasion of gastric adenocarcinoma cells.
PLOS ONE
Academic article
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics
Academic article
-
Steigedal, Tonje;
Prestvik, Wenche S;
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Bruland, Torunn;
Lægreid, Astrid;
Thommesen, Liv.
(2013)
Gastrin-induced proliferation involves MEK partner 1 (MP1).
In vitro Cellular & Developmental Biology-Animal
Academic article
2012
-
Fjeldbo, Christina Sæten;
Bakke, Ingunn;
Erlandsen, Sten Even;
Holmseth, Jannicke;
Lægreid, Astrid;
Sandvik, Arne Kristian;
Thommesen, Liv;
Bruland, Torunn.
(2012)
Gastrin upregulates the pro-survival factor secretory clusterin (sCLU) in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Nydal, Rune;
Efstathiou, Sophia;
Lægreid, Astrid.
(2012)
Crossover Research: Exploring a Collaborative Mode of Integration.
Academic chapter
2010
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2010)
Functional studies on RNA-transfected cell microarrays.
Methods in molecular biology
Academic article
-
Jørgensen, Katarina;
Felberg, Hanne Solvang;
Berge, Rolf K.;
Lægreid, Astrid;
Johansen, Berit.
(2010)
Platelet activating factor stimulates arachidonic acid release in differentiated keratinocytes via arachidonyl non-selective phospholipase A(2).
Archives of Dermatological Research
Academic article
2009
-
Hvidsten, Torgeir;
Lægreid, Astrid;
Kryshtafovych, Andriy;
Andersson, Gunnar;
Fidelis, Krzysztof;
Komorowski, J.
(2009)
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.
PLOS ONE
Academic article
-
Lægreid, Astrid;
Feilberg, Julie.
(2009)
Using the classification system for institutional profiling : the Norwegian University of Science and technology.
Academic chapter
2008
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Gunther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2008)
Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
Academic article
-
Nørsett, Kristin;
Lægreid, Astrid;
Kusnierczyk, Waclaw;
Langaas, Mette;
Ylving, S;
Fossmark, Reidar;
Myhre, Simen;
Falkmer, Sture Emil;
Waldum, Helge;
Sandvik, Arne Kristian.
(2008)
Changes in gene expression of gastric mucosa during therapeutic acid inhibition.
European Journal of Gastroenterology and Hepathology
Academic article
-
Hofsli, Eva;
Wheeler, Tommy L.;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Academic article
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2008)
Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
Academic article
-
Hofsli, Eva;
Wheeler, Tom Even;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Academic article
2007
-
Misund, Kristine;
Steigedal, Tonje Strømmen;
Lægreid, Astrid;
Thommesen, Liv.
(2007)
Inducible cAMP early repressor splice variants ICER I and IIgamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
Academic article
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Academic chapter
-
Misund, Kristine;
Steigedal, Tonje;
Lægreid, Astrid;
Thommesen, Liv.
(2007)
Inducible cAMP early repressor splice variants ICER I and II gamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
Academic article
-
Steigedal, Tonje;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Beisvåg, Vidar;
Ellingsen, Øyvind;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2007)
Physiological Genomics of Heart Failure: From Technology to Physiology.
Norges teknisk-naturvitenskapelige universitet
Doctoral thesis
-
Steigedal, Tonje Strømmen;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Bruland, Torunn;
Anderssen, Endre;
Eitrem, Berit Doseth;
Bergum, Hallgeir;
Beisvåg, Vidar;
Lægreid, Astrid.
(2007)
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards.
BMC Genomics
Academic article
2006
-
Myhre, S;
Tveit, Henrik;
Mollestad, Torulf;
Lægreid, Astrid.
(2006)
Additional Gene Ontology structure for improved biological reasoning.
Bioinformatics
Academic article
-
Beisvåg, Vidar;
Lehre, Per Kristian;
Midelfart, Herman;
Aass, H;
Geiran, O;
Sandvik, Arne Kristian;
Lægreid, Astrid;
Komorowski, Jan;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Academic article
-
Beisvag, Vidar;
Lehre, PK;
Midelfart, H;
Aas, Halfdan;
Geiran, Odd;
Sandvik, Arne K;
Lægreid, A.;
Komorowski, J.;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Academic article
-
Beisvåg, Vidar;
Jünge, Frode KR;
Bergum, Hallgeir;
Jølsum, Lars;
Lydersen, Stian;
Gunther, Clara-Cecilie;
Ramampiaro, Heri;
Langaas, Mette;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2006)
GeneTools - application for functional annotation and statistical hypothesis testing.
BMC Bioinformatics
Book review
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2006)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Academic literature review
2005
-
Tveit, Amund;
Sætre, Rune;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.
Proceedings - International Conference on Data Engineering
Academic article
-
Sætre, Rune;
Tveit, Amund;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Semantic annotation of biomedical literature using Google.
Lecture Notes in Computer Science (LNCS)
Academic article
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Sandvik, Arne K.;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Academic article
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Strømmen, Tonje;
Thommesen, Liv;
Stunes, Astrid Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating Protein Interactions Using Google and Gene Ontology.
Lecture Notes in Computer Science (LNCS)
Academic article
-
Thommesen, Liv;
Lægreid, Astrid.
(2005)
Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
Academic article
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Academic chapter
-
Thommesen, Liv;
Lægreid, Astrid.
(2005)
Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
Academic article
-
Sæten, Christina;
Bruland, Torunn;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Optimalisering av Transfekterte CellArray (TCA) for bruk i storskala hypothesetesting av genfunksjon.
IKM, NTNU
Master thesis
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2005)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Academic literature review
-
Nørsett, Kristin;
Lægreid, Astrid;
Langaas, Mette;
Wørlund, Sara Maria;
Fossmark, Reidar;
Waldum, Helge;
Sandvik, Arne Kristian.
(2005)
Molecular characterization of rat gastric mucosal response to potent acid inhibition.
Physiological Genomics
Academic article
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Kusnierczyk, Waclaw;
Falkmer, Ursula;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Academic article
-
Kusnierczyk, Waclaw;
Aamodt, Agnar;
Lægreid, Astrid.
(2005)
Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena.
Academic chapter
2004
-
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Bergum, Hallgeir;
Nørsett, Kristin;
Lægreid, Astrid.
(2004)
Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
BMC Biotechnology
Academic article
-
Nørsett, Kristin;
Lægreid, Astrid;
Midelfart, Herman;
Erlandsen, Sten Even;
Falkmer, Sture Emil;
Grønbech, Jon Erik;
Waldum, Helge;
Komorowski, Jan;
Sandvik, Arne Kristian.
(2004)
Gene expression based classification of gastric carcinoma.
Cancer Letters
Academic article
-
Flikka, K;
Lægreid, Astrid.
(2004)
XHM: A system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Bergum, Hallgeir;
Nørsett, Kristin;
Lægreid, Astrid.
(2004)
Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
BMC Biotechnology
Academic article
-
Drabløs, Finn;
Hammer, Mikael;
Lægreid, Astrid;
Hauglid, Jon Olav;
Alsberg, Bjørn Kåre.
(2004)
Bioinformatics.
Academic chapter
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: A system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
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Steigedal, Tonje;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Hofsli, Eva;
Wheeler, Tom Even;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Academic article
-
Tripathi, Sushil;
Christie, KR;
Balakrishnan, Ravin;
Huntley, R;
Hill, DP;
Thommesen, Liv;
Blake, JA;
Kuiper, Martin;
Lægreid, Astrid.
(2013)
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Database: The Journal of Biological Databases and Curation
Academic article
-
Lægreid, A.;
Komorowski, J.;
Sandvik, Arne K.;
Hovig, Eivind;
Forus, Anne;
Smith-Sørensen, Birgitte;
Beisvag, Vidar;
Kristiansen, B.;
Nørsett, K.;
Nygaard, Vegard.
(2001)
DNA mikroarray- vindu mot tusentals gen.
NBS-nytt
Academic article
-
Hvidsten, Torgeir;
Lægreid, Astrid;
Kryshtafovych, Andriy;
Andersson, Gunnar;
Fidelis, Krzysztof;
Komorowski, J.
(2009)
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.
PLOS ONE
Academic article
-
Beisvag, Vidar;
Lehre, PK;
Midelfart, H;
Aas, Halfdan;
Geiran, Odd;
Sandvik, Arne K;
Lægreid, A.;
Komorowski, J.;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Academic article
-
Komorowski, J.;
Hvidstaen, T.R.;
Jenssen, Tor-Kristian;
Tjedvoll, D.;
Hovig, Eivind;
Lægreid, A.;
Sandvik, Arne K..
(2001)
Mot kunnskapsoppdagelse fra DNA mikromatise uttrykksdata.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Academic article
-
Misund, Kristine;
Selvik, Linn-Karina M.;
Rao, Shalini;
Nørsett, Kristin Gabestad;
Bakke, Ingunn;
Sandvik, Arne;
Lægreid, Astrid;
Bruland, Torunn;
Prestvik, Wenche S;
Thommesen, Liv.
(2013)
NR4A2 is regulated by Gastrin and involved in gastrin-induced migration and invasion of gastric adenocarcinoma cells.
PLOS ONE
Academic article
-
Jenssen, Tor-Kristian;
Lægreid, A.;
Komorowski, J.;
Hovig, Eivind.
(2001)
A litterature network of human genes for high-throughput gene expression analysis.
Nature Genetics
Academic article
-
Beisvåg, Vidar;
Jünge, Frode KR;
Bergum, Hallgeir;
Jølsum, Lars;
Lydersen, Stian;
Gunther, Clara-Cecilie;
Ramampiaro, Heri;
Langaas, Mette;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2006)
GeneTools - application for functional annotation and statistical hypothesis testing.
BMC Bioinformatics
Book review
-
Sandvik, Arne K.;
Støren, O.;
Nørsett, K.;
Børresen-Dale, Anne-Lise;
Lægreid, A.;
Myklebost, Ola.
(2001)
Måling av genaktivitet med DNA mikromatriser (mikroarray). Molekylære og teknologiske prinsipper.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Academic article
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics
Academic article
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology
Academic article
-
Carbon, Seth J.;
Douglass, Eric;
Good, Benjamin M;
Unni, Deepak R;
Harris, Nomi L.;
Mungall, Christopher J.;
Basu, Siddartha;
Chisholm, Rex L.;
Dodson, Robert J.;
Hartline, Eric.
(2021)
The Gene Ontology resource: enriching a GOld mine.
Nucleic Acids Research (NAR)
Academic article
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2010)
Functional studies on RNA-transfected cell microarrays.
Methods in molecular biology
Academic article
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: A system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
Andersen, S;
Sjursen, W;
Lægreid, A;
Austgulen, Rigmor;
Johansen, B.
(1994)
Immunohistologic detection of non-pancreatic phospholipase A2 (type II) in human placenta and its possible involvement in normal parturition at term.
Prostaglandins, Leukotrienes and Essential Fatty Acids
Academic article
-
Menden, Michael Patrick;
Wang, Dennis;
Mason, Mike J.;
Szalai, Bence;
Bulusu, Krishna C.;
Guan, Yuanfang;
Flobak, Åsmund;
Kuiper, Martin;
Lægreid, Astrid;
Thommesen, Liv.
(2019)
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Nature Communications
Academic article
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2005)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Academic literature review
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Academic article
-
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Bergum, Hallgeir;
Nørsett, Kristin;
Lægreid, Astrid.
(2004)
Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
BMC Biotechnology
Academic article
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2006)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Academic literature review
-
Steigedal, Tonje Strømmen;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Folkesson, Evelina;
Niederdorfer, Barbara;
Nakstad, Vu To;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids (Scientific Reports, (2020), 10, 1, (11574), 10.1038/s41598-020-68441-0).
Scientific Reports
Corrigendum
-
Jørgensen, Katarina;
Felberg, Hanne Solvang;
Berge, Rolf K.;
Lægreid, Astrid;
Johansen, Berit.
(2010)
Platelet activating factor stimulates arachidonic acid release in differentiated keratinocytes via arachidonyl non-selective phospholipase A(2).
Archives of Dermatological Research
Academic article
-
Yadetie, Fekadu;
Lægreid, Astrid;
Bakke, Ingunn;
Kusnierczyk, Waclaw;
Komorowski, Jan;
Waldum, Helge;
Sandvik, Arne Kristian.
(2003)
Liver gene expression in rats in response to the peroxisome proliferator-activated receptor-{alpha} agonist ciprofibrate.
Physiological Genomics
Academic article
-
Touré, Vasundra;
Vercruysse, Steven;
Acencio, Marcio Luis;
Lovering, Ruth C.;
Orchard, Sandra;
Bradley, Glyn;
Casals-Casas, Cristina;
Chaouiya, Claudine;
del-Toro, Noemi;
Flobak, Åsmund.
(2020)
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST).
Bioinformatics
Academic article
-
Lovering, Ruth C.;
Gaudet, Pascale;
Acencio, Marcio Luis;
Ignatchenko, Alex;
Jolma, Arttu;
Fornes, Oriol;
Kuiper, Martin;
Kulakovskiy, Ivan V.;
Lægreid, Astrid;
Martin, Maria J..
(2021)
A GO catalogue of human DNA-binding transcription factors.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
-
Nørsett, Kristin;
Lægreid, Astrid;
Midelfart, H;
Yadetie, Fekadu;
Erlandsen, S.E.;
Falkmer, Sture Emil;
Grønbech, Jon Erik;
Waldum, Helge;
Komorowski, Jan;
Sandvik, Arne Kristian.
(2003)
Gene expression based classification of gastric carcinoma.
Cancer Letters
Academic article
-
Nørsett, Kristin;
Lægreid, Astrid;
Langaas, Mette;
Wørlund, Sara Maria;
Fossmark, Reidar;
Waldum, Helge;
Sandvik, Arne Kristian.
(2005)
Molecular characterization of rat gastric mucosal response to potent acid inhibition.
Physiological Genomics
Academic article
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Kusnierczyk, Waclaw;
Falkmer, Ursula;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Academic article
-
Komorowski, Jan;
Lægreid, Astrid;
Hvidsten, Torgeir Rhoden.
(2003)
Learning rule-based models from gene expression time profiles annotated using Gene Ontology.
Bioinformatics
Academic article
-
Venkatesan, Aravind;
Tripathi, Sushil;
Galdeano, Alejandro Sanz de;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir;
Kuiper, Martin.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Academic article
-
Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation
Academic article
-
Sandvik, Arne Kristian;
Støren, O;
Nørsett, Kristin;
Børresen-Dale, AL;
Lægreid, Astrid;
Myklebost, O.
(2001)
Måling av genaktivitet med DNA mikromatriser (microarray). Molekylære og teknologiske prinsipper.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Academic article
-
Lægreid, Astrid;
Solberg, Berge;
Faxvaag, Arild.
(2001)
Genomforskning og genteknologi. Nye muligheiter for diagnostikkog behandling.
Revmatikeren
Popular science article
-
Bakke, Ingunn;
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Kusnierczyk, W;
Waldum, Helge;
Lægreid, Astrid.
(2003)
DNA microarray analysis of liver gene expression in rats after longterm treatment with ciprofibrate.
Physiological Genomics
Academic article
-
Komorowski, Jan;
Hvidsten, TR;
Jenssen, T-K;
Hovig, E;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2001)
Mot kunnskapsoppdagelse fra DNA mikromatrise (microarray) genuttrykksdata.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Academic article
-
Hvidsten, TR;
Komorowski, Jan;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2001)
Predicting gene function for gene expressions and ontologies.
Proceedings Pacific Symposium on Biocomputing
Academic article
-
Fjeldbo, Christina Sæten;
Bakke, Ingunn;
Erlandsen, Sten Even;
Holmseth, Jannicke;
Lægreid, Astrid;
Sandvik, Arne Kristian;
Thommesen, Liv;
Bruland, Torunn.
(2012)
Gastrin upregulates the pro-survival factor secretory clusterin (sCLU) in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Academic article
-
Gaudet, Pascale;
Logie, Colin;
Lovering, Ruth C.;
Kuiper, Martin;
Lægreid, Astrid;
Thomas, Paul D..
(2021)
Gene Ontology representation for transcription factor functions.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Academic article
-
Steigedal, Tonje;
Prestvik, Wenche S;
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Bruland, Torunn;
Lægreid, Astrid;
Thommesen, Liv.
(2013)
Gastrin-induced proliferation involves MEK partner 1 (MP1).
In vitro Cellular & Developmental Biology-Animal
Academic article
-
Bruland, Torunn;
Anderssen, Endre;
Eitrem, Berit Doseth;
Bergum, Hallgeir;
Beisvåg, Vidar;
Lægreid, Astrid.
(2007)
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards.
BMC Genomics
Academic article
Part of book/report
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Academic chapter
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Academic chapter
-
Drabløs, Finn;
Hammer, Mikael;
Lægreid, Astrid;
Hauglid, Jon Olav;
Alsberg, Bjørn Kåre.
(2004)
Bioinformatics.
Academic chapter
-
Lægreid, Astrid;
Feilberg, Julie.
(2009)
Using the classification system for institutional profiling : the Norwegian University of Science and technology.
Academic chapter
-
Kusnierczyk, Waclaw;
Aamodt, Agnar;
Lægreid, Astrid.
(2005)
Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena.
Academic chapter
-
Nydal, Rune;
Efstathiou, Sophia;
Lægreid, Astrid.
(2012)
Crossover Research: Exploring a Collaborative Mode of Integration.
Academic chapter
Student thesis or dissertation
-
Sæten, Christina;
Bruland, Torunn;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Optimalisering av Transfekterte CellArray (TCA) for bruk i storskala hypothesetesting av genfunksjon.
IKM, NTNU
Master thesis
-
Beisvåg, Vidar;
Ellingsen, Øyvind;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2007)
Physiological Genomics of Heart Failure: From Technology to Physiology.
Norges teknisk-naturvitenskapelige universitet
Doctoral thesis
Outreach
2023
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Conference posterRingers, Christa; Holmberg, David; Georgiev, Polina; Lægreid, Astrid Renner; Carreras-Puigvert, Jordi; Flobak, Åsmund; Spjuth, Ola. (2023) Morphological profiling by Cell Painting to capture colorectal cancer disease heterogeneity. Cytodata
2022
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Conference posterRingers, Christa Nelleke; Georgiev, Polina; Lægreid, Astrid Renner; Carreras-Puigvert, Jordi; Flobak, Åsmund; Spjuth, Ola. (2022) Morphological profiling to capture colorectal cancer disease heterogeneity. PhenoTarget 2022 Conference
2018
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Conference lectureAcencio, Marcio Luis; Krallinger, Martin; Kuiper, Martin; Lægreid, Astrid. (2018) Mining DbTF-TG causal interactions from biomedical literature. GREEKC CA15205: Ontologies for the Gene Regulation Knowledge Commons, and Database 'FAIRness' Short description:
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Conference posterTouré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin. (2018) Knowledge management and standard representation of causal statements for systems modeling. JOBIM 2018
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LectureNiederdorfer, Barbara; Vázquez, Miguel; Thommesen, Liv; Kuiper, Martin; Lægreid, Astrid; Flobak, Åsmund. (2018) Logical model simulations predict drug synergies across different cancer cell lines. ISMB 2018
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Conference lectureNydal, Rune; Lægreid, Astrid; Kuiper, Martin; Gabrielsen, Ane Møller. (2018) Introduction. Visions for Life Science Knowledge Commons. Visions for Life Science Knowledge Commons
2017
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Conference posterTouré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin Tremen R.. (2017) Extraction and representation of causal statements: Creating a model building resource for Systems Biology. COMBINE 2017
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Conference lectureAcencio, Marcio Luis; Vázquez, Miguel; Kuiper, Martin; Lægreid, Astrid. (2017) DbTF-TG interactions and regulatory relationships: a survey. Curation workshop on molecular and causal interactions
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LectureAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin; Thommesen, Liv; Leitner, Florian; Krallinger, Martin; Lourenço, Analia; Vázquez, Miguel; Valencia, Alfonso. (2017) NTNU DbTF Curation: current status and Mining Transcription Regulation Information from Literature. Short Research Stay at the European Bioinformatics Institute (EBI)
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Conference lectureAcencio, Marcio Luis; Lægreid, Astrid. (2017) Representation of sequence-specific DNA binding transcription factors (DbTFs) complexes. Curation workshop on molecular and causal interactions
2016
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Conference lectureNydal, Rune; Lægreid, Astrid; Kuiper, Martin. (2016) Curation strategeis of NTNU project. Workshop upstart crossover at EBI
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LectureAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. (2016) Knowledge Commons digitalization - curation. Crossover Seminar
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LectureAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. (2016) Causal statements for Gene Regulation & Signal Transduction: what can be done in PSI-MI. HUPO-PSI meeting 2016
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Conference posterFlobak, Åsmund; Steigedal, Tonje S.; Thommesen, Liv; Kuiper, Martin Tremen R.; Lægreid, Astrid. (2016) Logical models for drug screen prioritization. European Conference on Computational Biology
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Conference lectureLægreid, Astrid. (2016) Why we need the Knowledge Commons. Today's biology is not possible without. Science for the common good – visions of technological opportunities
2014
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Conference posterKuiper, Martin; Lægreid, Astrid. (2014) The GRECO initiative: taking care of Gene Regulation knowledge. Virtual Physiological Human Conference 2014
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Conference posterVange, Pål; Beisvag, Vidar; Flatberg, Arnar; Afroz, Wahida; Nordrum, Ivar Skjåk; Sørdal, Øystein Finset; Qvigstad, Gunnar; Thommesen, Liv; Lægreid, Astrid; Sandvik, Arne Kristian. (2014) Molecular mechanisms of cellular stress responses in gastric cancer. Digestive Disease Week 2014
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Conference posterFlobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid. (2014) Drug synergies in a gastric cancer cell line discovered by signal transduction modeling. Virtual Physiological Human Conference 2014
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Conference posterKuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Galdeano, Alejandro Sanz de; Lægreid, Astrid. (2014) The gene expression knowledge base. Virtual Physiological Human Conference 2014
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LectureNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid; Kuiper, Martin. (2014) Setting the stage: Tragedy of the knowledge commons. Knowledge management and the futures of our society, a Virtual Physiological Human 2014 Satellite Workshop
2013
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Conference posterRao, Shalini; Selvik, Linn-Karina M.; Nørsett, Kristin Gabestad; Bakke, Ingunn; Misund, Kristine; Bruland, Torunn; S, Prestvik Wenche; Lægreid, Astrid; Thommesen, Liv. (2013) NR4A2 is regulated by gastrin and influences cellular responses in gastric adenocarcinoma cells. Nuclear receptors: Linking molecules, genomes & physiology
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Conference posterRao, Shalini; Thommesen, Liv; Nørsett, Kristin; Bakke, Ingunn; Misund, Kristine; Bruland, Torunn; Prestvik, Wenche S; Lægreid, Astrid. (2013) Nr4A2 is regulated by gastrin and influences cellular responses in gastric adenocarcinoma cells. Kontaktmøte Norsk Biokjemisk Selskap
2012
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Conference lectureEfstathiou, Sophia; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid; Nydal, Rune. (2012) Research Systems for Systems Biology. European Meetings on Cybernetics and Systems Research
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Conference lectureEfstathiou, Sophia; Nydal, Rune; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid. (2012) Well-constructed systems biology: Integrating socio-humanist research. European Meetings on Cybernetics and Systems Research
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Conference lectureEfstathiou, Sophia; Nydal, Rune; Kuiper, Martin; Lægreid, Astrid; Carusi, Annamaria. (2012) When ‘Knowledge’ Becomes Something to Manage. Society for the Study of Nanoscience and Emerging Technologies
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Conference lectureNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid. (2012) Widening the circles of collaboration - Integrating philosophy in systems biology. Fourth Annual converence of the society for the study of nanoscience and emerging technologies
2011
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Conference lectureNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid. (2011) Well-constructed systems biology. Integrating Socio-humanist Research. S-Net, Third annual meeting
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Conference posterTripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir; Thommesen, Liv; Bruland, Torunn; Kuiper, Martin; Lægreid, Astrid. (2011) Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. Bio-Ontologies 2011
2010
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Conference posterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology
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Conference posterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Fjeldbo, Christina Sæten; Flatberg, Arnar; Selvik, Linn-Karina M.; Beisvag, Vidar; Sandvik, Arne Kristian; Lægreid, Astrid; Thommesen, Liv. (2010) Exploring signal-induced cellular regulatory subnetworks by use of partial least square regression (PLSR) multidimensional analysis of gene expression time series data. 13th Annual MGED meeting , Boston, Massachusetts, USA
2009
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Conference lectureSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2009) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response and is repressed by ICER and Zfp36l1. NBS Kontaktmøte 2009
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Conference posterAnderssen, Endre; Bruland, Torunn; Misund, Kristine; Sandvik, Arne K.; Thommesen, Liv; Lægreid, Astrid. (2009) Using basic networks motifs and biological background knowledge to analyze transcriptomic time series data. MGED Meeting
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Beisvåg, Vidar; Sandvik, Arne K.; Lægreid, Astrid; Thommesen, Liv. (2009) Discovering basic network motifs that underlie gastrin induced gene expression. 10th international conference on system biology
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Conference lectureThommesen, Liv; Misund, Kristine; Selvik, Linn Karina Myrland; Lægreid, Astrid; Bruland, Torunn. (2009) NR4A" (Nurr1) - involved in gastrin-mediated carcinogenesis?. Contact meeting NBS
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Conference lectureBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Doseth, Berit; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2009) Basic common architectural motifs underlying gastrin induced gene expression can be identified by dimension reduction methods. Contact Meeting NBS
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Beisvag, Vidar; Sandvik, Arne Kristian; Thommesen, Liv; Lægreid, Astrid. (2009) Discovering basic network motifs that underlie gastrin induced gene expression. The 10th International Conference on System Biology ICSB-2009, USA
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Conference lectureBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2009) Basic common architectural motifs underlying gastrin induced gene expression can be identified by dimention reduction methods. NBS 43. Contact Meeting
2008
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2008) Significance analysis of gastrin-mediated transcription using dimension reduction methods for interpreting and modelling DNA microarray time series gene expression. 3rd ESF Functional Genomics Conference; Functional genomics and disease
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Lægreid, Astrid; Thommesen, Liv. (2008) Molecular mechanisms in cancer related gastrin responses. Cancer Epigenetics Conference
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Conference posterSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje Strømmen; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2008) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response. ESF Functional Genomics and Disease
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Conference posterBruland, Torunn; Andersen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Fjeldbo, Christina Sæten; Lægreid, Astrid; Thommesen, Liv. (2008) Molecular mecanisms in cancer-related gastrin responses. Cancer Epigenetics
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Conference posterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2008) Significance analysis of gastrin-mediated transcription using dimension reduction methods for interpreting and modelling DNA microarray time series gene expression data. ESF Functional Genomics and Disease
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Conference posterSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2008) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response. ESF Functional Genomics and Disease Conference
2007
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Conference lectureSæten, Christina; Misund, Kristine; Steigedal, Tonje; Otterlei, Marit; Lægreid, Astrid; Thommesen, Liv; Bruland, Torunn. (2007) Complex functional studies in mammalian cells using transfected cell arrays. The Norwegian Bichemical Society 43. Contact Meeting
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Conference lectureSteigedal, Tonje; Bruland, Torunn; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Inducible cAMP early repressor (ICER) suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression. The Norwegian Bichemical Society 43. Contact Meeting
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Conference posterMisund, Kristine; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2007) Global gene expression in HEK 293 cells with controllable ICER I and II gamma overexpression. NBS kontaktmøte 2007
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LectureGether, Harald; Moe, Geir; Nilssen, Robert; Undeland, Tore Marvin; Nielsen, Kai Olav; Karstad, Per Ivar; Lægreid, Astrid. (2007) Ren energi til ren industri. Invitert møte i for departementene (OED, ND, MD)
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Conference posterMisund, Kristine; Hoel, Sunniva; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2007) Global gene expression in HEK 293 cells with controllable ICER I and IIg - overexpression. Norsk Biokjemisk Selskaps 43. kontaktmøte
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Conference posterSæten, Christina; Misund, Kristine; Steigedal, Tonje Strømmen; Lægreid, Astrid; Thommesen, Liv; Bruland, Torunn. (2007) Complex functional studies in mammalian cells using transfected cell arrays. Norsk Biokjemisk Selskaps 43. kontaktmøte
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Conference posterSteigedal, Tonje Strømmen; Bruland, Torunn; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Inducible cAMP early repressor (ICER) suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression. Norsk Biokjemisk Selskaps 43. kontaktmøte
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Conference lectureHua, Chen Yan; Ramampiaro, Heri; Lægreid, Astrid; Sætre, Rune. (2007) ProtIR prototype: abstract relevance for Protein-Protein Interaction in BioCreAtIvE2 Challenge, PPI-IAS subtask. BioCreAtIvE II
2006
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Conference posterMisund, Kristine; Hoel, Sunniva; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2006) Global gene expression in HEK 293 cells with controllable ICER I or IIgamma overexpression. The Seventh International Conference on Systems Biology; ICSB 2006
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Conference posterOestvang, Janne; Brattbakk, Hans-Richard; Huseby, Sjur; Langaas, Mette; Lægreid, Astrid; Johansen, Berit. (2006) Transcription profiling show induction of a wide range of proinflammatory genes in response to lysophosphatidylcholine stimulation in monocytes. XIV International Symposium on Atherosclerosis
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Conference posterOestvang, Janne; Brattbakk, Hans-Richard; Huseby, Sjur; Langaas, Mette; Lægreid, Astrid; Johansen, Berit. (2006) Lysophosphatidylcholine stimulates increased level of transcript of proinflammatory genes in macrophages. The 7th International Conference on Systems Biology
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Conference posterBruland, Torunn; Anderssen, Endre; Eitrem, Berit Doseth; Bergum, Hallgeir; Beisvåg, Vidar; Lægreid, Astrid. (2006) Optimization of cDNA microarrays procdures using optimization criteria that does not rely on an external standard. Poster presentation ICSB-2006 Japan
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Conference posterSteigedal, Tonje S.; Bruland, Torunn; Eitrem, Berit Doseth; Endre, Anderssen; Thommesen, Liv; Lægreid, Astrid. (2006) Systems Biology of Gastrointestinal Tumour BiologyStudies of gastrin mediated regulation of gene expression. The 7th International Conference on Systems Biology
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Conference posterGünther, Clara-Cecilie; Langaas, Mette; Lydersen, Stian; Beisvåg, Vidar; Junge, Frode Romstad Krohn; Bergum, Hallgeir; Lægreid, Astrid. (2006) Statistical hypothesis testing of association between two lists of genes. Statistics for gene and protein expression workshop
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Conference posterArbo, Ingerid; Brattbakk, Hans-Richard; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Langsrud, Øyvind; Kulseng, Bård Eirik. (2006) Definisjon av en ”livsstilsalgoritme” til anvendelse for forebygging, diagnose og terapi ved kronisk sykdom. Regional forsknings- og utviklingskonferanse 2006 " Forskning – undring satt i system"
2005
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Conference lectureTveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. International Workshop on Biomedical Data Engineering (BMDE 2005, In conjunction with ICDE 2005)
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Conference lectureSætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic Annotation of Biomedical Literature Using Google. Data Mining and Bioinformatics Workshop (DMBIO 2005, In conjunction with ICCSA 2005)
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Conference posterSteigedal, Tonje S.; Bruland, Torunn; Ween, Ola; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2005) Function of splice variants of the transcriptional repressor ICER in gastrin-mediated responses. The Norwegian Biochemical Society 41st Contact Meeting
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Conference posterWeen, Ola; Beisvåg, Vidar; Strømmen, Tonje; Lægreid, Astrid. (2005) Specific detection of alternative splice variants using oligonucleotide microarrays. 2nd ESF Functional Genomics Conference: Functional Genomics and Disease, Oslo 6-11 september 2005
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Conference posterStrømmen, Tonje; Ween, Ola; Thommesen, Liv; Lægreid, Astrid. (2005) Detection of alternatively spliced variants of ICER, a member of the CREB/CREM/ATF transcription factor family. NBS Winter meeting-january 2005-Tromsø
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Conference posterMisund, Kristine; Lægreid, Astrid; Thommesen, Liv. (2005) Constitutive and inducible expression of ICER in HEK 293. NBS kontaktmøte
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Conference posterBruland, Torunn; Eitrem, Berit Doseth; Anderssen, Endre; Beisvåg, Vidar; Lægreid, Astrid. (2005) Effects of choice and dose of dT blockers in cDNA microarray experiments. NBS Contact meeting
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Conference lectureMisund, Kristine; Lægreid, Astrid; Thommesen, Liv. (2005) Constitutive and inducible expression of ICER in HEK 293. Kontaktmøtet Norsk Biokjemisk Selskap 2005
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Conference posterBruland, Torunn; Sæten, Christina; Strømmen, Tonje; Bergum, Hallgeir; Otterlei, Marit; Thommesen, Liv; Lægreid, Astrid. (2005) High-throughput characterisation of gene function using cell microarray. The2nd ESF Functional Genomic Conference, Oslo
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Conference lectureAnderssen, Endre; Bruland, Torunn; Ween, Ola; Langaas, Mette; Follestad, Turid; Lægreid, Astrid. (2005) Design and analysisi of microarray time series experiment. NBS Kontaktmøte 2005
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Conference lectureKusnierczyk, Waclaw; Aamodt, Agnar; Lægreid, Astrid. (2005) Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena. International Conference on Case Based Reasoning (ICCBR)
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Conference posterGunther, Clara-Cecilie; Langaas, Mette; Lydersen, Stian; Beisvåg, Vidar; Jynge, Frode Romstad Krohn; Bergum, Hallgeir; Lægreid, Astrid. (2005) Statistical Hypothesis Testing of Association Between Two Reporter Lists Within the GO-hierarchy. European Meeting of Statisticians
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Conference posterArbo, Ingerid; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Johansen, Berit. (2005) Medical Technology in cardiovascular disease: The use, development and integration of microarray technology, statistics and computational biology on definition of a "Life style algorithm" to be employed in chronic disease prevention, diagnosis and therapy. European Science Foundation (ESF) Training Course, Microarray Gene Expression Analysis - Power and Potential of Standardisation
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Conference posterArbo, Ingerid; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Langsrud, Øyvind; Johansen, Berit. (2005) Definition of a "lifestyle algorithm" to be used in chronic disease prevention, diagnosis and therapy. 2nd ESF Functional Genomics Conference "Functional Genomics and Disease"
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Conference lectureWeen, Ola; Beisvåg, Vidar; Strømmen, Tonje; Lægreid, Astrid. (2005) Specific detection of alternative splice variants using oligonucleotide microarrays. 2nd ESF Functional Genomics Conference: Functional Genomics and Disease, Oslo 6-11 september 2005
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Conference lectureBruland, Torunn; Bergum, Hallgeir; Ween, Ola; Thommesen, Liv; Lægreid, Astrid. (2005) System biology of the normal and diseased gastrointestinal system: High-througput characterisation of gene function using cell microarray. 2nd ESF Function genomica and disease
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Conference lectureNørsett, K; Bruland, Torunn; Ween, Ola; Hofsli, Eva; Thommesen, Liv; Misund, Kristine; Strømmen, Tonje; Komorowski, Jan; Sandvik, Arne K.; Lægreid, Astrid. (2005) Systems biology of the normal and diseased gastrointestinal system. 2nd ESF Function genomics and disease
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Conference posterSteigedal, Tonje Strømmen; Bruland, Torunn; Ween, Ola; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2005) Function of splice variants of the transcriptional repressor ICER in gastrin-mediated reponses. NBS kontaktmøte
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Conference lectureLægreid, Astrid; Thommesen, Liv; Bruland, Torunn; Ween, Ola; Sandvik, Arne K.; Bergum, Hallgeir; Beisvåg, Vidar; Kusnierczyk, W; Aamodt, Agnar; Komorowski, Jan. (2005) System biology of the normal and diseased gastrointestinal system. 8th International meeting of microarray gene expression data society
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Conference lectureNørsett, Kristin; Bruland, Torunn; Ween, Ola; Hofsli, Eva; Thommesen, Liv; Misund, Kristine; Strømmen, Tonje; Kusnierczyk, Waclaw; Aamodt, Agnar; Midelfart, Herman. (2005) Systems biology of the normal and diseased gastrointestinal system. 2nd ESF Functional Genomics Conference
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LectureSætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES 2005
2004
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Conference lectureDrabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. InfoSam2020
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Conference posterWeen, Ola; Lægreid, Astrid. (2004) Specific detection of alternative splice variants using oligonucleotide microarrays. Symposium - Alternate Transcript Diversity – Data, Biology, and Therapeutics; Wellcome Trust Genome Campus, Hinxton, UK
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Conference lectureWeen, Ola; Lægreid, Astrid. (2004) Specific detection of alternative splice variants using oligonucleotide microarrays. NBS kontakmøte 2004
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Conference posterStrømmen, Tonje; Prestvik, Wenche Slettahjell; Wong, Garry; Thommesen, Liv; Lægreid, Astrid. (2004) Detection and functional studies of alternatively spliced variants of ICER, a member of the CREB/CREM/ATF transcription factor family. Kontaktmøtet Norsk Biokjemisk Selskap
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Conference posterKusnierczyk, Waclaw; Aamodt, Agnar; Lægreid, Astrid. (2004) Towards Automated Explanation of Gene-Gene Relationships. RECOMB 2004
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Conference posterMisund, Kristine; Stunes, Astrid Kamilla; Tømmerdal, Linda; Thommesen, Liv; Bruland, Torunn; Lægreid, Astrid. (2004) Constitutive expression of ICER in the cell-line HEK 293. Kontaktmøtet Norsk Biokjemisk Selskap 2004
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Conference lectureBruland, Torunn; Bergum, Hallgeir; Steigedal, Tonje; Otterlei, Marit; Thommesen, Liv; Lægreid, Astrid. (2004) Array based screening og gene function and cell-biological application of transfected-cell microarrays. NBS Kontaktmøte
2003
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Conference lectureThommesen, Liv; Bergum, Hallgeir; Langaas, Mette; Beisvåg, Vidar; Sandvik, Arne Kristian; Bruland, Torunn; Ween, Ola; Lægreid, Astrid. (2003) Rat Microarray Analysis Resources. Meetings on rat genomics and Models
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Conference lectureThommesen, Liv; Bergum, Hallgeir; Langaas, Mette; Beisvåg, Vidar; Sandvik, Arne K.; Bruland, Torunn; Ween, Ola; Lægreid, Astrid. (2003) Rat Microarray Analysis Resources. Meetings on rat genomics and Models
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Conference posterThommesen, Liv; Lægreid, Astrid; Misund, Kristine. (2003) Constitutive expression of ICER in the human cell line AR42J. Kontaktmøtet Norsk Biokjemisk Selskap
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Conference lectureWitsø, Eivind; Beisvåg, Vidar; Langaas, M.; Lysvand, Hilde; Persen, Leif; Lægreid, Astrid; Bergh, Kåre. (2003) DNA microarray: A new diagnostic tool in orthopaedic infections?. 22nd Annual Meeting: European Bone and Joint Infection Society
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Conference lectureNørsett, Kristin; Kuznierczyk, W.; Lægreid, Astrid; Langaas, M.; Waldum, Helge; Sandvik, Arne Kristian. (2003) Gene expression profiles in gastric mucosa during therapeutic acid inhibition. ESF, Functional Genomics and Disease. 1st Conference
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Conference posterHofsli, Eva; Sandvik, Arne Kristian; Langaas, Mette; Lægreid, Astrid. (2003) Identification of gastrin-regulated genes in human carcinoid tumor cells. Functional genomics and diseases
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Conference lectureNørsett, Kristin; Kuznierczyk, W.; Lægreid, Astrid; Langaas, M.; Yadetie, Fekadu; Kvam, S.N.; Wørlund, S.; Waldum, Helge; Sandvik, Arne Kristian. (2003) Gene expression profiles in hypergastrinemic rats and patients. Norsk Biokjemisk Selskaps Årsmøte
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Conference posterHofsli, Eva; Sandvik, Arne K.; Langaas, Mette; Lægreid, Astrid; Thommesen, Liv. (2003) Identification of gastrin-regulated genes in human carcinoid tumor cells. Functional genomics and diseases
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Conference posterThommesen, Liv; Lægreid, Astrid; Misund, Kristine. (2003) Constitutive expression of ICER in the human cell line AR42J. Kontaktmøtet Norsk Biokjemisk Selskap
2002
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LectureYadetie, Fekadu; Bakke, Ingunn; Lægreid, Astrid; Kusnierczyk, Waclaw; Komorowski, Jan; Waldum, Helge; Sandvik, Arne Kristian. (2002) Analysis of effects of the PPAR alpha agonist ciprofibrate on rat hepatic gene expressions using cDNA microarrays. The 7th IUBMB Conference Receptor-ligand Interactions Molecular, Physiological and Pharmacological Aspects
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Conference posterMidelfart, Herman; Kusnierczyk, Waclaw Marcin; Hvidsten, Torgeir Rhoden; Lægreid, Astrid; Komorowski, Jan. (2002) Learning Yeast Gene Function from Expression Programs and Gene Ontology. Norwegian Biochemical Society’s Wintermeeting
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Conference posterBeisvåg, Vidar; Jølsum, Lars; Kusnierczyk, Waclaw; Langaas, Mette; Alsberg, Bjørn Kåre; Bergum, Hallgeir; Komorowski, Jan; Sandvik, Arne Kristian; Lægreid, Astrid. (2002) eGOn � a new tool for mapping microarray data onto the Gene Ontology structure. Standards and Ontologies for Functional Genomics
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LectureNørsett, Kristin; Lægreid, Astrid; Yadetie, Fekadu; Midelfart, H; Komorowski, Jan; Falkmer, Sture Emil; Grønbech, Jon Erik; Waldum, Helge; Sandvik, Arne Kristian. (2002) Molekylær klassifisering av magekreft. Norsk Gastroenterologisk Forenings 29. årsmøte
2001
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Conference posterHvidsten, Torgeir Rhoden; Komorowski, Jan; Sandvik, AK; Lægreid, Astrid. (2001) Predicting gene function from gene expressions and ontologies. Pacific Symposium on Biocomputiong, PSB2001
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Conference lectureHvidsten, TR; Sandvik, Arne Kristian; Midelfart, Herman; Lægreid, Astrid; Komorowski, Jan. (2001) A method based on rough set supervised learning used to predict the biological function of unknown genes from DNA microarray gene expression data. Third International Meeting on Microarray Data Standards, Annnotations,Ontologies and Databases.
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Conference lectureMidelfart, Herman; Lægreid, Astrid; Komorowski, Jan. (2001) Classification of Gene Expression Data in an Ontology. The second international Symposium on Medical Data Analysis (ISMDA-2001)
2000
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Conference posterHvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Komorowski, Jan; Lægreid, Astrid; Sandvik, AK; Tjeldvoll, Dyre. (2000) Template-based gene expression analysis. The Fourth Annual International Conference on Computational Molecular Biology
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Conference posterJenssen, Tor-Kristian; Komorowski, Jan; Lægreid, Astrid; Hovig, Eivind. (2000) Pubgen: Discovering and visualising gene-gene relations. The Fourth Annual International Conference on Computational Molecular Biology
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Conference lectureKomorowski, Jan; Hvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Tjeldvoll, Dyre; Hovig, Eivind; Sandvik, AK; Lægreid, Astrid. (2000) Towards Knowledge Discovery from cDNA Microarray Gene Expression Data. Principles of data mining and knowledge discovery : 4th European conference
1999
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LectureJenssen, TK; Lægreid, Astrid; Komorowski, Jan. (1999) Knowledge-Based Data Mining in Genomics. Data Mining for Bioinformatics - Towards In Silico Biology
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LectureNørsett, Kristin; Thommesen, Liv; Hofsli, E; Sandvik, AK; Lægreid, Astrid. (1999) Molecular characterization of the neuroendicrine cell line AR42J. Biokjemisk kontaktmøte
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Conference posterHvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Lægreid, Astrid; Øhrn, Aleksander; Tjeldvoll, Dyre; Komorowski, Jan. (1999) Boolean Reasoning in the Analysis of Gene Expression Data. Data Mining for Bioinformatics: Towards in Silico Biology
1998
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LectureJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv; Anthonsen, Marit Walbye. (1998) A role of both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes?. NBS Kontaktmøte 98
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Conference posterNørsett, Kristin; Thommesen, Liv; Hofsli, E; Sandvik, AK; Lægreid, Astrid. (1998) Molecular characterization of the neuroendocrine cell line AR42J. Norsk Biokjemisk Selskaps Årsmøte
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Conference posterThommesen, Liv; Nørsett, Kristin; Sandvik, AK; Lægreid, Astrid. (1998) Induction of ICER gene expression in neuroendocrine derived cell lines. International Congress on Signal Transduction
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Conference posterThommesen, Liv; Nørsett, Kristin; Sandvik, AK; Lægreid, Astrid. (1998) ICER expression in gastrin stimulated endocrine cells. Norsk Biokjemisk Selskaps Årsmøte
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Conference lectureJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv; Anthonsen, Marit Walbye. (1998) A role for both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes?. NBS Kontaktmøte 98
1997
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Conference lectureSandvik, AK; Gabestad, K.; Thommesen, Liv; Lægreid, Astrid. (1997) Mechanisms for transcriptional regulation of the immediate early response gene ICER vary between different neuroendocrine derived cell lines. XXXIII International Congress of Physiological Sciences
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Conference lectureJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv. (1997) A role for both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes. FEBS Special Meetintg on Signal Transduction
1996
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Conference lectureThommesen, Liv; Sjursen, Wenche; Gåsvik, Katrine; Johansen, Berit; Lægreid, Astrid. (1996) The role of phospholipases A2 in the activation of NFkB in human keratinocytes. 32. Biokjemiske kontaktmøte
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Conference lectureLægreid, Astrid; Nonstad, Unni; Sundan, Anders; Espevik, Terje. (1996) Lipopolysaccharide signalling mechanism in human adenocarcinoma SW480 cells. 32. Biokjemiske kontaktmøte
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