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  1. Employees

Språkvelger

Norsk

Jostein Johansen

Jostein Johansen

Senior Engineer
Department of Clinical and Molecular Medicine

j.johansen@ntnu.no
+4773598522 +4790657733 +4772573359 Laboratoriesenteret, Øya
Bioinformatics Core Facility Bioinformatics & Gene Regulation
Publications Media

Publications

  • Chronological
  • By category
  • See all publications in Cristin

2021

  • Rolinski, Milosz; Montaldo, Nicola Pietro; Aksu, Merdane Ezgi; Martin, Sarah Fordyce; Brambilla, Alessandro; Kunath, Nicolas. (2021) Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation. Nucleic Acids Research (NAR)
    Academic article

2019

  • Xavier, Alexandre; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Johansen, Jostein; Singh, Ashish Kumar; Sjursen, Wenche. (2019) Comprehensive mismatch repair gene panel identifies variants in patients with Lynch-like syndrome. Molecular Genetics & Genomic Medicine
    Academic article

2017

  • Olsen, Maria Belland; Hildrestrand, Gunn Annette; Scheffler, Katja; Vinge, Leif Erik; Alfsnes, Katrine; Palibrk, Vuk. (2017) NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture. Cell reports
    Academic article
  • Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics
    Academic article
  • Landfors, Miriam; Johansen, Jostein; Aronsen, Jan Magnus; Vågbø, Cathrine Broberg; Doré, Louis C.; He, Chuan. (2017) Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation. Cell Discovery
    Academic article

2015

  • Simpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Johnsen, Roar; Storrø, Ola; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis in offspring. PLOS ONE
    Academic article
  • Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer
    Academic article
  • Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer
    Abstract

2014

  • Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE
    Academic article
  • Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics
    Academic article
  • Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology
    Academic article

2013

  • Hofsli, Eva; Sjursen, Wenche; Prestvik, Wenche S; Johansen, Jostein; Rye, Morten Beck; Tranø, Gerd. (2013) Identification of serum microRNA profiles in colon cancer. British Journal of Cancer
    Academic article

2011

  • Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports
    Academic article

2010

  • Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics
    Academic article
  • Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics
    Academic article
  • Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies
    Abstract

2008

  • Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics
    Academic article

2006

  • Dumeaux, vanessa; Johansen, Jostein; Borresen-Dale, AL; Børresen-Dale, Anne-Lise; Lund, Eiliv. (2006) Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy. Molecular Cancer Therapeutics
    Academic article

Journal publications

  • Rolinski, Milosz; Montaldo, Nicola Pietro; Aksu, Merdane Ezgi; Martin, Sarah Fordyce; Brambilla, Alessandro; Kunath, Nicolas. (2021) Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation. Nucleic Acids Research (NAR)
    Academic article
  • Xavier, Alexandre; Olsen, Maren Fridtjofsen; Lavik, Liss Ane; Johansen, Jostein; Singh, Ashish Kumar; Sjursen, Wenche. (2019) Comprehensive mismatch repair gene panel identifies variants in patients with Lynch-like syndrome. Molecular Genetics & Genomic Medicine
    Academic article
  • Olsen, Maria Belland; Hildrestrand, Gunn Annette; Scheffler, Katja; Vinge, Leif Erik; Alfsnes, Katrine; Palibrk, Vuk. (2017) NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture. Cell reports
    Academic article
  • Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane. (2017) Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics
    Academic article
  • Landfors, Miriam; Johansen, Jostein; Aronsen, Jan Magnus; Vågbø, Cathrine Broberg; Doré, Louis C.; He, Chuan. (2017) Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation. Cell Discovery
    Academic article
  • Simpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Johnsen, Roar; Storrø, Ola; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis in offspring. PLOS ONE
    Academic article
  • Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. Familial Cancer
    Academic article
  • Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2015) A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers. Familial Cancer
    Abstract
  • Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLOS ONE
    Academic article
  • Mærk, Mali; Johansen, Jostein; Ertesvåg, Helga; Drabløs, Finn; Valla, Svein. (2014) Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits. BMC Genomics
    Academic article
  • Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2014) The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities. Environmental Microbiology
    Academic article
  • Hofsli, Eva; Sjursen, Wenche; Prestvik, Wenche S; Johansen, Jostein; Rye, Morten Beck; Tranø, Gerd. (2013) Identification of serum microRNA profiles in colon cancer. British Journal of Cancer
    Academic article
  • Kotlar, Hans Kristian; Lewin, Anna; Johansen, Jostein; Throne-Holst, Mimmi; Haverkamp, Thomas Hendricus Augustus; Markussen, Sidsel. (2011) High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environmental Microbiology Reports
    Academic article
  • Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2010) Relationship between operon preference and functional properties of persistent genes in bacterial genomes. BMC Genomics
    Academic article
  • Bratlie, Marit Skyrud; Johansen, Jostein; Sherman, Brad T; Huang, Da Wei; Lempicki, Richard A; Drabløs, Finn. (2010) Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics
    Academic article
  • Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies
    Abstract
  • Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein; Drabløs, Finn. (2008) Assessment of composite motif discovery methods. BMC Bioinformatics
    Academic article
  • Dumeaux, vanessa; Johansen, Jostein; Borresen-Dale, AL; Børresen-Dale, Anne-Lise; Lund, Eiliv. (2006) Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy. Molecular Cancer Therapeutics
    Academic article

Media

2019

  • Poster
    Rønning, Torunn Gresdal; Haugum, Kjersti; Johansen, Jostein; Ås, Christina Gabrielsen; Afset, Jan Egil. (2019) Comparative genomics of Streptococcus agalactiae from adults with invasive infection. 36th Annual meeting of NSCMID 2019 , Trondheim 2019-09-13 - 2019-09-15
  • Poster
    Taxt, Arne Michael; Jonassen, Tom Øystein; Lyng, Randi Valsø; Johansen, Jostein; Løvgården, Gunilla; Frye, Stephen. (2019) A nosocomial outbreak of Group B Streptococcus serotype Ib causing sepsis in the neonatal intensive care unit. ESCMID ECCMID, 2019, Amsterdam , Amsterdam 2019-04-13 - 2019-04-16

2016

  • Poster
    Johansen, Jostein; Chawla, Konika; Olsen, Lene Christin; Sætrom, Pål. (2016) Bioinformatics Core Facility. NTNU Seminar for staff at the future Faculty of Medicine and Health Sciences , Trondheim 2016-11-10 - 2016-11-11

2015

  • Poster
    Lewin, Anna; Johansen, Jostein; Markussen, Sidsel; Josefsen, Kjell Domaas; Jasinovica, Svetlana; Wu, Cheng-Cang. (2015) Isolation and genome sequencing of two Archaea species from a Norwegian deep sub-surface oil reservoir. American Society for Microbiology ASM2015 , New Orleans 2015-05-30 - 2015-06-02
  • Academic lecture
    Simpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Storrø, Ola; Johnsen, Roar; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis (oral presentation). International Milk Genomics Consortium 12th International Symposium on Milk Genomics and Human Health , Sydney 2015-10-26 - 2015-10-28
  • Poster
    Simpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Storrø, Ola; Johnsen, Roar; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotics supplementation and atopic dermatitis in offspring (poster). International Milk Genomics Consortium 12th International Symposium on Milk Genomics and Human Health , Sydney 2015-10-26 - 2015-10-28

2014

  • Poster
    Haugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Genomic comparison reveals heterogeneity among non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS). American Society for Microbiology ASM General meeting 2014 , Boston 2014-05-17 - 2014-05-20
  • Academic lecture
    Hansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. COST Action BM1206 Meeting , Leiden 2014-09-04 - 2014-09-04

2013

  • Poster
    Lewin, Anna; Wentzel, Alexander; Johansen, Jostein; Drabløs, Finn; Kotlar, Hans Kristian; Valla, Svein. (2013) Bioprospecting using oil reservoir material - different approaches for search of new enzymes. Bioprosp 13 , Tromsø 2013-02-20 - 2013-02-22
  • Academic lecture
    Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Comparative Metagenomics and Bioprospecting of Oil Reservoirs. International Society for Functionals Metagenomics Second International Conference on Functional Metagenomics. , Pretoria 2013-06-02 - 2013-06-05
  • Academic lecture
    Lewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Comparative metagenomics of deeply buried oil reservoirs suggests very slow rates of evolution in the deep biosphere. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28
  • Academic lecture
    Wentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Metagenome analysis of oil reservoir microbial communities and its potential in bioprospecting for new industrial biocatalysts. 3rd Annual World Congress of Marine Biotechnology , Hangzhou 2013-09-23 - 2013-09-25
  • Academic lecture
    Lewin, Anna; Johansen, Jostein; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein; Wentzel, Alexander. (2013) Oil reservoir metagenomics for use in microbial community characterization and bioprospecting. 99th annual meeting of the Southeastern Branch of the American Society for Microbiology , Auburn, AL 2013-11-07 - 2013-11-09
  • Poster
    Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn. (2013) Oil reservoir metagenomes for use in bioprospecting using functional screening and DNA sequence-based data mining. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28

2010

  • Academic lecture
    Zub, Kamila; Sousa, Mirta; Aas, Per Arne; Young, Clifford; Tian, Erming; Johansen, Jostein. (2010) A proteomics and genomic approach to identify factors associated with melphalan resistance in multiple myeloma cells. NTNU 6th Norwegian National Proteomics Meeting , trondheim 2010-12-09 - 2010-12-10
  • Poster
    Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. 22nd conference of The Society for Medical Innovation and Technology , Trondheim 2010-09-02 - 2010-09-04

2009

  • Academic lecture
    Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2009) Bioinformatics for downstream data analysis. Metagenome Meeting , Oslo 2009-05-25 - 2009-05-25
  • Poster
    Zub, Kamila; Sousa, Mirta; Young, Clifford; Tian, Erming; Johansen, Jostein; Hagen, Lars. (2009) What a difference melphalan makes! Differential protein expression in melphalan resistant and sensitive multiple myeloma cells using SILAC analysis. Select Biosciences Proteomics Europe , Barcelona 2009-11-05 - 2009-11-06
  • Poster
    Puntervoll, Pål; Johansen, Jostein; Mattingsdal, Morten; Hovig, Eivind; Drabløs, Finn; Jonassen, Inge. (2009) The FUGE Bioinformatics platform - A central platform in the FUGE2 period. Norwegian Biochemical Society 45. NBS Contact Meeting , Røros 2009-01-29 - 2009-02-01

2008

  • Academic lecture
    Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15
  • Academic lecture
    Drabløs, Finn; Bratlie, Marit Skyrud; Johansen, Jostein; Schwalie, Petra Catalina. (2008) Gene and genome properties. FUGE Bioinformatics Norwegian Bioinformatics Forum , Bergen 2008-10-09 - 2008-10-10
  • Poster
    Bratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15

2000

  • Academic lecture
    Larsen, Åsmund; Hagelin, Gunnar; Hvattum, Erlend; Svendsen, John Sigurd; Jensen, Einar; Kvarsnes, Arnfinn. (2000) Collision-induced dissociation of blood glycerophospholipids. 9. Seminar i Massespektrometri , Geilo, 27. - 29. januar, 1999 iven collisi
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