Jostein Johansen
Publications
2021
-
Rolinski, Milosz;
Montaldo, Nicola Pietro;
Aksu, Merdane Ezgi;
Martin, Sarah Fordyce;
Brambilla, Alessandro;
Kunath, Nicolas.
(2021)
Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation.
Nucleic Acids Research (NAR)
Academic article
2019
-
Xavier, Alexandre;
Olsen, Maren Fridtjofsen;
Lavik, Liss Ane;
Johansen, Jostein;
Singh, Ashish Kumar;
Sjursen, Wenche.
(2019)
Comprehensive mismatch repair gene panel identifies variants in patients with Lynch-like syndrome.
Molecular Genetics & Genomic Medicine
Academic article
2017
-
Olsen, Maria Belland;
Hildrestrand, Gunn Annette;
Scheffler, Katja;
Vinge, Leif Erik;
Alfsnes, Katrine;
Palibrk, Vuk.
(2017)
NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture.
Cell reports
Academic article
-
Hansen, Maren;
Johansen, Jostein;
Sylvander, Anna Elisabeth;
Bjørnevoll, Inga;
Talseth-Palmer, Bente Anita;
Lavik, Liss Ane.
(2017)
Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome.
Clinical Genetics
Academic article
-
Landfors, Miriam;
Johansen, Jostein;
Aronsen, Jan Magnus;
Vågbø, Cathrine Broberg;
Doré, Louis C.;
He, Chuan.
(2017)
Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation.
Cell Discovery
Academic article
2015
-
Simpson, Melanie Rae;
Brede, Gaute;
Johansen, Jostein;
Johnsen, Roar;
Storrø, Ola;
Sætrom, Pål.
(2015)
Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis in offspring.
PLOS ONE
Academic article
-
Hansen, Maren Fridtjofsen;
Johansen, Jostein;
Bjørnevoll, Inga;
Sylvander, Anna Elisabeth;
Steinsbekk, Kristin Solum;
Sætrom, Pål.
(2015)
A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine.
Familial Cancer
Academic article
-
Hansen, Maren Fridtjofsen;
Johansen, Jostein;
Bjørnevoll, Inga;
Sylvander, Anna Elisabeth;
Steinsbekk, Kristin Solum;
Sætrom, Pål.
(2015)
A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers.
Familial Cancer
Abstract
2014
-
Haugum, Kjersti;
Johansen, Jostein;
Gabrielsen, Christina;
Brandal, Lin Thorstensen;
Bergh, Kåre;
Ussery, David Wayne.
(2014)
Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway.
PLOS ONE
Academic article
-
Mærk, Mali;
Johansen, Jostein;
Ertesvåg, Helga;
Drabløs, Finn;
Valla, Svein.
(2014)
Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits.
BMC Genomics
Academic article
-
Lewin, Anna;
Johansen, Jostein;
Wentzel, Alexander;
Kotlar, Hans Kristian;
Drabløs, Finn;
Valla, Svein.
(2014)
The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities.
Environmental Microbiology
Academic article
2013
-
Hofsli, Eva;
Sjursen, Wenche;
Prestvik, Wenche S;
Johansen, Jostein;
Rye, Morten Beck;
Tranø, Gerd.
(2013)
Identification of serum microRNA profiles in colon cancer.
British Journal of Cancer
Academic article
2011
-
Kotlar, Hans Kristian;
Lewin, Anna;
Johansen, Jostein;
Throne-Holst, Mimmi;
Haverkamp, Thomas Hendricus Augustus;
Markussen, Sidsel.
(2011)
High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface.
Environmental Microbiology Reports
Academic article
2010
-
Bratlie, Marit Skyrud;
Johansen, Jostein;
Drabløs, Finn.
(2010)
Relationship between operon preference and functional properties of persistent genes in bacterial genomes.
BMC Genomics
Academic article
-
Bratlie, Marit Skyrud;
Johansen, Jostein;
Sherman, Brad T;
Huang, Da Wei;
Lempicki, Richard A;
Drabløs, Finn.
(2010)
Gene duplications in prokaryotes can be associated with environmental adaptation.
BMC Genomics
Academic article
-
Drabløs, Finn;
Petersen, Kjell;
Johansen, Jostein;
Nygård, Ståle;
Ahmad, Rafi;
Smalås, Arne.
(2010)
The FUGE Bioinformatics platform: a central platform in the FUGE2 period.
MITAT. Minimally invasive therapy & allied technologies
Abstract
2008
-
Klepper, Kjetil;
Sandve, Geir Kjetil;
Abul, Osman;
Johansen, Jostein;
Drabløs, Finn.
(2008)
Assessment of composite motif discovery methods.
BMC Bioinformatics
Academic article
2006
-
Dumeaux, vanessa;
Johansen, Jostein;
Borresen-Dale, AL;
Børresen-Dale, Anne-Lise;
Lund, Eiliv.
(2006)
Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy.
Molecular Cancer Therapeutics
Academic article
Journal publications
-
Rolinski, Milosz;
Montaldo, Nicola Pietro;
Aksu, Merdane Ezgi;
Martin, Sarah Fordyce;
Brambilla, Alessandro;
Kunath, Nicolas.
(2021)
Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation.
Nucleic Acids Research (NAR)
Academic article
-
Xavier, Alexandre;
Olsen, Maren Fridtjofsen;
Lavik, Liss Ane;
Johansen, Jostein;
Singh, Ashish Kumar;
Sjursen, Wenche.
(2019)
Comprehensive mismatch repair gene panel identifies variants in patients with Lynch-like syndrome.
Molecular Genetics & Genomic Medicine
Academic article
-
Olsen, Maria Belland;
Hildrestrand, Gunn Annette;
Scheffler, Katja;
Vinge, Leif Erik;
Alfsnes, Katrine;
Palibrk, Vuk.
(2017)
NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture.
Cell reports
Academic article
-
Hansen, Maren;
Johansen, Jostein;
Sylvander, Anna Elisabeth;
Bjørnevoll, Inga;
Talseth-Palmer, Bente Anita;
Lavik, Liss Ane.
(2017)
Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome.
Clinical Genetics
Academic article
-
Landfors, Miriam;
Johansen, Jostein;
Aronsen, Jan Magnus;
Vågbø, Cathrine Broberg;
Doré, Louis C.;
He, Chuan.
(2017)
Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation.
Cell Discovery
Academic article
-
Simpson, Melanie Rae;
Brede, Gaute;
Johansen, Jostein;
Johnsen, Roar;
Storrø, Ola;
Sætrom, Pål.
(2015)
Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis in offspring.
PLOS ONE
Academic article
-
Hansen, Maren Fridtjofsen;
Johansen, Jostein;
Bjørnevoll, Inga;
Sylvander, Anna Elisabeth;
Steinsbekk, Kristin Solum;
Sætrom, Pål.
(2015)
A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine.
Familial Cancer
Academic article
-
Hansen, Maren Fridtjofsen;
Johansen, Jostein;
Bjørnevoll, Inga;
Sylvander, Anna Elisabeth;
Steinsbekk, Kristin Solum;
Sætrom, Pål.
(2015)
A novel POLE variant, identified by exome sequencing, causes colorectal- and extra-colonic cancers.
Familial Cancer
Abstract
-
Haugum, Kjersti;
Johansen, Jostein;
Gabrielsen, Christina;
Brandal, Lin Thorstensen;
Bergh, Kåre;
Ussery, David Wayne.
(2014)
Comparative genomics to delineate pathogenic potential in Non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway.
PLOS ONE
Academic article
-
Mærk, Mali;
Johansen, Jostein;
Ertesvåg, Helga;
Drabløs, Finn;
Valla, Svein.
(2014)
Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits.
BMC Genomics
Academic article
-
Lewin, Anna;
Johansen, Jostein;
Wentzel, Alexander;
Kotlar, Hans Kristian;
Drabløs, Finn;
Valla, Svein.
(2014)
The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities.
Environmental Microbiology
Academic article
-
Hofsli, Eva;
Sjursen, Wenche;
Prestvik, Wenche S;
Johansen, Jostein;
Rye, Morten Beck;
Tranø, Gerd.
(2013)
Identification of serum microRNA profiles in colon cancer.
British Journal of Cancer
Academic article
-
Kotlar, Hans Kristian;
Lewin, Anna;
Johansen, Jostein;
Throne-Holst, Mimmi;
Haverkamp, Thomas Hendricus Augustus;
Markussen, Sidsel.
(2011)
High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface.
Environmental Microbiology Reports
Academic article
-
Bratlie, Marit Skyrud;
Johansen, Jostein;
Drabløs, Finn.
(2010)
Relationship between operon preference and functional properties of persistent genes in bacterial genomes.
BMC Genomics
Academic article
-
Bratlie, Marit Skyrud;
Johansen, Jostein;
Sherman, Brad T;
Huang, Da Wei;
Lempicki, Richard A;
Drabløs, Finn.
(2010)
Gene duplications in prokaryotes can be associated with environmental adaptation.
BMC Genomics
Academic article
-
Drabløs, Finn;
Petersen, Kjell;
Johansen, Jostein;
Nygård, Ståle;
Ahmad, Rafi;
Smalås, Arne.
(2010)
The FUGE Bioinformatics platform: a central platform in the FUGE2 period.
MITAT. Minimally invasive therapy & allied technologies
Abstract
-
Klepper, Kjetil;
Sandve, Geir Kjetil;
Abul, Osman;
Johansen, Jostein;
Drabløs, Finn.
(2008)
Assessment of composite motif discovery methods.
BMC Bioinformatics
Academic article
-
Dumeaux, vanessa;
Johansen, Jostein;
Borresen-Dale, AL;
Børresen-Dale, Anne-Lise;
Lund, Eiliv.
(2006)
Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy.
Molecular Cancer Therapeutics
Academic article
Media
2019
-
PosterRønning, Torunn Gresdal; Haugum, Kjersti; Johansen, Jostein; Ås, Christina Gabrielsen; Afset, Jan Egil. (2019) Comparative genomics of Streptococcus agalactiae from adults with invasive infection. 36th Annual meeting of NSCMID 2019 , Trondheim 2019-09-13 - 2019-09-15
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PosterTaxt, Arne Michael; Jonassen, Tom Øystein; Lyng, Randi Valsø; Johansen, Jostein; Løvgården, Gunilla; Frye, Stephen. (2019) A nosocomial outbreak of Group B Streptococcus serotype Ib causing sepsis in the neonatal intensive care unit. ESCMID ECCMID, 2019, Amsterdam , Amsterdam 2019-04-13 - 2019-04-16
2016
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PosterJohansen, Jostein; Chawla, Konika; Olsen, Lene Christin; Sætrom, Pål. (2016) Bioinformatics Core Facility. NTNU Seminar for staff at the future Faculty of Medicine and Health Sciences , Trondheim 2016-11-10 - 2016-11-11
2015
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PosterLewin, Anna; Johansen, Jostein; Markussen, Sidsel; Josefsen, Kjell Domaas; Jasinovica, Svetlana; Wu, Cheng-Cang. (2015) Isolation and genome sequencing of two Archaea species from a Norwegian deep sub-surface oil reservoir. American Society for Microbiology ASM2015 , New Orleans 2015-05-30 - 2015-06-02
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Academic lectureSimpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Storrø, Ola; Johnsen, Roar; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotic supplementation and atopic dermatitis (oral presentation). International Milk Genomics Consortium 12th International Symposium on Milk Genomics and Human Health , Sydney 2015-10-26 - 2015-10-28
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PosterSimpson, Melanie Rae; Brede, Gaute; Johansen, Jostein; Storrø, Ola; Johnsen, Roar; Sætrom, Pål. (2015) Human breast milk miRNA, maternal probiotics supplementation and atopic dermatitis in offspring (poster). International Milk Genomics Consortium 12th International Symposium on Milk Genomics and Human Health , Sydney 2015-10-26 - 2015-10-28
2014
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PosterHaugum, Kjersti; Johansen, Jostein; Gabrielsen, Christina; Brandal, Lin Thorstensen; Bergh, Kåre; Ussery, David Wayne. (2014) Genomic comparison reveals heterogeneity among non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS). American Society for Microbiology ASM General meeting 2014 , Boston 2014-05-17 - 2014-05-20
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Academic lectureHansen, Maren Fridtjofsen; Johansen, Jostein; Bjørnevoll, Inga; Sylvander, Anna Elisabeth; Steinsbekk, Kristin Solum; Sætrom, Pål. (2014) Using exome sequencing for identification of high-risk genetic variants in a family predisposed for colorectal cancer. COST Action BM1206 Meeting , Leiden 2014-09-04 - 2014-09-04
2013
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PosterLewin, Anna; Wentzel, Alexander; Johansen, Jostein; Drabløs, Finn; Kotlar, Hans Kristian; Valla, Svein. (2013) Bioprospecting using oil reservoir material - different approaches for search of new enzymes. Bioprosp 13 , Tromsø 2013-02-20 - 2013-02-22
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Academic lectureWentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Comparative Metagenomics and Bioprospecting of Oil Reservoirs. International Society for Functionals Metagenomics Second International Conference on Functional Metagenomics. , Pretoria 2013-06-02 - 2013-06-05
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Academic lectureLewin, Anna; Johansen, Jostein; Wentzel, Alexander; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein. (2013) Comparative metagenomics of deeply buried oil reservoirs suggests very slow rates of evolution in the deep biosphere. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28
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Academic lectureWentzel, Alexander; Lewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian. (2013) Metagenome analysis of oil reservoir microbial communities and its potential in bioprospecting for new industrial biocatalysts. 3rd Annual World Congress of Marine Biotechnology , Hangzhou 2013-09-23 - 2013-09-25
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Academic lectureLewin, Anna; Johansen, Jostein; Kotlar, Hans Kristian; Drabløs, Finn; Valla, Svein; Wentzel, Alexander. (2013) Oil reservoir metagenomics for use in microbial community characterization and bioprospecting. 99th annual meeting of the Southeastern Branch of the American Society for Microbiology , Auburn, AL 2013-11-07 - 2013-11-09
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PosterLewin, Anna; Johansen, Jostein; Aakvik Strand, Trine; Klinkenberg, Geir; Kotlar, Hans Kristian; Drabløs, Finn. (2013) Oil reservoir metagenomes for use in bioprospecting using functional screening and DNA sequence-based data mining. 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems (ISMOS-4) , Rio de Janeiro 2013-08-25 - 2013-08-28
2010
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Academic lectureZub, Kamila; Sousa, Mirta; Aas, Per Arne; Young, Clifford; Tian, Erming; Johansen, Jostein. (2010) A proteomics and genomic approach to identify factors associated with melphalan resistance in multiple myeloma cells. NTNU 6th Norwegian National Proteomics Meeting , trondheim 2010-12-09 - 2010-12-10
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PosterDrabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne. (2010) The FUGE Bioinformatics platform: a central platform in the FUGE2 period. 22nd conference of The Society for Medical Innovation and Technology , Trondheim 2010-09-02 - 2010-09-04
2009
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Academic lectureBratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2009) Bioinformatics for downstream data analysis. Metagenome Meeting , Oslo 2009-05-25 - 2009-05-25
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PosterZub, Kamila; Sousa, Mirta; Young, Clifford; Tian, Erming; Johansen, Jostein; Hagen, Lars. (2009) What a difference melphalan makes! Differential protein expression in melphalan resistant and sensitive multiple myeloma cells using SILAC analysis. Select Biosciences Proteomics Europe , Barcelona 2009-11-05 - 2009-11-06
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PosterPuntervoll, Pål; Johansen, Jostein; Mattingsdal, Morten; Hovig, Eivind; Drabløs, Finn; Jonassen, Inge. (2009) The FUGE Bioinformatics platform - A central platform in the FUGE2 period. Norwegian Biochemical Society 45. NBS Contact Meeting , Røros 2009-01-29 - 2009-02-01
2008
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Academic lectureBratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15
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Academic lectureDrabløs, Finn; Bratlie, Marit Skyrud; Johansen, Jostein; Schwalie, Petra Catalina. (2008) Gene and genome properties. FUGE Bioinformatics Norwegian Bioinformatics Forum , Bergen 2008-10-09 - 2008-10-10
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PosterBratlie, Marit Skyrud; Johansen, Jostein; Drabløs, Finn. (2008) Why do bacterial genes form operons?. Computational Methods in Systems Biology , Rostock 2008-10-12 - 2008-10-15
2000
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Academic lectureLarsen, Åsmund; Hagelin, Gunnar; Hvattum, Erlend; Svendsen, John Sigurd; Jensen, Einar; Kvarsnes, Arnfinn. (2000) Collision-induced dissociation of blood glycerophospholipids. 9. Seminar i Massespektrometri , Geilo, 27. - 29. januar, 1999 iven collisi