Michael D. Martin
About
Research in my lab involves analyzing genome sequences in order to reconstruct and interpret the evolutionary histories of plants, animals, and their associated microbial communities. I am particularly attracted to cases in which ancient/degraded DNA derived from natural history collections allows us to understand present-day distributions of biodiversity by looking directly into the past.
Research opportunities for master students are available in the Holomuseomics research group. I encourage you to make contact if you are interested in becoming involved.
Research
ColdRein
Palaeo-genomics to reconstruct the evolutionary responses of endemic high-arctic reindeer to past environmental change
DarwinPlants
Probing the genomic basis of rapid evolutionary diversification in the Galápagos daisy trees (genus Scalesia)
BiGTREE
BiGTREE is an HKdir-funded NORPART training network between Norway, Peru and Colombia. This network aims to provide training in cutting-edge bioinformatic evolutionary analysis in the field of biodiversity genomics.
Publications
2023
-
Battlay, Paul;
Wilson, Jonathan;
Bieker, Vanessa Carina;
Lee, Christopher;
Prapas, Diana;
Petersen, Bent;
Craig, Sam;
van Boheemen, Lotte;
Scalone, Romain;
de Silva, Nissanka;
Sharma, Amit;
Konstantinovic, Bojan;
Nurkowski, Kristin;
Rieseberg, Loren H.;
Connallon, Tim;
Martin, Michael David;
Hodgins, Kathryn A..
(2023)
Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia.
Nature Communications.
volum 14 (1).
Academic article
-
Brandslet, Steinar;
Martin, Michael David;
Bieker, Vanessa Carina.
(2023)
Supergenes helped bring alien plant to Norway.
Gemini (English edition).
Popular scientific article
-
Cerca Monteiro De Oliveira, José Pedro;
Cotoras, Darko;
Bieker, Vanessa Carina;
De-Kayne, Rishi;
Vargas, Pablo;
Fernández-Mazuecos, Mario;
López-Delgado, Julia;
White, Oliver;
Stervander, Martin;
Geneva, Anthony J.;
Andino, Juan E. Guevara;
Meier, Joana Isabel;
Roeble, Lizzie;
Brée, Baptiste;
Patiño, Jairo;
Guayasamin, Juan M.;
de Lourdes Torres, María;
Valdebenito, Hugo;
Castañeda, María del Rosario.
(2023)
Evolutionary genomics of oceanic island radiations.
Trends in Ecology & Evolution.
Academic literature review
-
Hansen, Charles Christian Riis;
Láruson, Áki Jarl;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Sinding, Mikkel Holger Strander;
Hallgrimsson, Gunnar T.;
von Schmalensee, Menja;
Stefansson, Robert A.;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Sonne, Christian;
Dietz, Rune;
Skelmose, Kim;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Helgason, Agnar S.;
Gilbert, Marcus Thomas Pius.
(2023)
Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla).
Molecular Ecology.
volum 32.
Academic article
-
Zhang, Pei;
Zhu, Yuanzhen;
Guo, Qunfei;
Li, Ji;
Zhan, Xiaoyu;
Yu, Hao;
Xie, Nianxia;
Tan, Huishuang;
Lundholm, Nina;
Garcia-Cuetos, Lydia;
Martin, Michael David;
Antó Subirats, Meritxell;
Su, Yi-Hsien;
Ruiz-Trillo, Iñaki;
Martindale, Mark Q.;
Yu, Jr-Kai;
Gilbert, M. Thomas P.;
Zhang, Guojie;
Li, Qiye.
(2023)
On the origin and evolution of RNA editing in metazoans.
Cell reports.
volum 42 (2).
Academic article
2022
-
Bieker, Vanessa Carina;
Battlay, Paul;
Petersen, Bent;
Sun, Xin;
Wilson, Jonathan;
Brealey, Jaelle C.;
Bretagnolle, François;
Nurkowski, Kristin;
Lee, Chris;
Sánchez Barreiro, Fatima;
Owens, Gregory;
Lee, Jacqueline;
Kellner, Fabian Laszlo;
van Boheeman, Lotte;
Gopalakrishnan, Shyam;
Gaudeul, Myriam;
Mueller-Schaerer, Heinz;
Lommen, Suzanne;
Karrer, Gerhard.
(2022)
Uncovering the genomic basis of an extraordinary plant invasion.
Science Advances.
volum 8 (34).
Academic article
-
Brandslet, Steinar;
Cerca Monteiro De Oliveira, José Pedro;
Martin, Michael David.
(2022)
Darwin’s giant daises and evolution.
Gemini (English edition).
Popular scientific article
-
Brealey, Jaelle;
Lecaudey, Laurene Alicia;
Kodama, Miyako;
Rasmussen, Jacob A.;
Sveier, Harald;
Dheilly, Nolwenn M.;
Martin, Michael David;
Limborg, Morten Tønsberg.
(2022)
Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host.
mBio.
volum 13 (3).
Academic article
-
Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel;
Li, Siyu;
Li, Qionghou;
Loureiro, João;
Kosawang, Chatchai;
Jaramillo Díaz, Patricia;
Rivas-Torres, Gonzalo;
Fernández-Mazuecos, Mario;
Vargas, Pablo;
McCauley, Ross;
Petersen, Gitte;
Santos-Bay, Luisa;
Wales, Nathan;
Catchen, Julian M..
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications.
volum 13.
Academic article
-
Gopalakrishnan, Shyam;
Ebenesersdottir, S.Sunna;
Lundstrøm, Inge K.C.;
Turner-Walker, Gordon;
Moore, Kristjan H.S.;
Luisi, Pierre;
Magaryan, Ashot;
Martin, Michael David;
Ellegaard, Martin Rene;
Magnusson, Olafur T.;
Sigurdsson, Asgeir;
Snorradóttir, Steinunn;
Magnúsdóttir, Droplaug N.;
Laffoon, Jason E.;
van Dorp, Lucy;
Liu, Xiaodong;
Moltke, Ida;
Avila-Arcos, María C.;
Schraiber, Joshua G..
(2022)
The population genomic legacy of the second plague pandemic.
Current Biology.
volum 32.
Academic article
-
Hansen, Charles Christian Riis;
Baleka, Sina;
Magnea Guðjónsdóttir, Sólveig;
Agerbo Rasmussen, Jacob;
Chimal Ballesteros, Jesus Adrian;
Thor Hallgrimsson, Gunnar;
Stefansson, Robert A.;
Von Schmalensee, Menja;
Haukur Skarphedinsson, Kristinn;
Lage Labansen, Aili;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2022)
Erratum to: Distinctive mitogenomic lineages within populations of White-tailed Eagles(Ornithology DOI: 10.1093/ornithology/ukab081).
The AUK: A Quarterly Journal of Ornithology.
volum 139 (3).
Errata
-
Malmstrom, Carolyn;
Martin, Michael David;
Gagnevin, Lionel.
(2022)
Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources.
Annual Review of Phytopathology.
volum 60.
Academic literature review
-
Nygaard, Malene;
Kopatz, Alexander;
Speed, James David Mervyn;
Martin, Michael David;
Prestø, Tommy;
Kleven, Oddmund;
Bendiksby, Mika.
(2022)
Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens.
Ecology and Evolution.
volum 12 (8).
Academic article
2021
-
Aguilar Tomasini, Maria Alejandra;
Martin, Michael David;
Speed, James David Mervyn.
(2021)
Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation.
Global Ecology and Conservation.
volum 31.
Academic article
-
Foote, Andrew;
Gilbert, Marcus Thomas Pius;
Gopalakrishnan, Shyam;
Louis, Marie;
Martin, Michael David;
Morin, Phillip A.;
Nykänen, Milaja;
Scharff-Olsen, Camilla;
Excoffier, Laurent.
(2021)
Evidence of long-term purging of mutation load in killer whale genomes.
bioRxiv - the preprint server for biology.
Academic article
-
Foote, Andrew;
Hooper, Rebecca;
Alexander, Alana;
Baird, Robin;
Baker, Charles Scott;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John;
Esteban, Ruth;
Excoffier, Laurent;
Martin, Sarah;
Forney, Karin A.;
Gerrodette, Tim;
Gilbert, Marcus Thomas Pius.
(2021)
Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
Molecular Ecology.
volum 30 (23).
Academic article
-
Hansen, Charles Christian Riis;
Baleka, Sina;
Gudjonsdottir, Solveig Magnea;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Hallgrimsson, Gunnar Thor;
Stefansson, Robert A.;
von Schmalensee, Menja;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2021)
Distinctive mitogenomic lineages within populations of white-tailed eagles (Haliaeetus albicilla).
Journal of Ornithology.
volum 139 (2).
Academic article
-
Meleshko, Olena;
Martin, Michael David;
Korneliussen, Thorfinn Sand;
Schröck, Christian;
Lamkowski, Paul;
Schmutz, Jeremy;
Healey, Adam;
Piatkowski, Bryan T;
Shaw, A. Jonathan;
Weston, David J;
Flatberg, Kjell Ivar;
Szövényi, Péter;
Hassel, Kristian;
Stenøien, Hans K..
(2021)
Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus.
Molecular Biology and Evolution (MBE).
volum 38 (7).
Academic article
-
Rasmussen, Jacob A.;
Villumsen, Kasper Rømer;
Duchêne, David;
Puetz, Lara;
Delmont, Tom;
Sveier, Harald;
von Gersdorff Jørgensen, Louise;
Præbel, Kim;
Martin, Michael David;
Bojesen, Anders Miki;
Gilbert, Marcus Thomas Pius;
Kristiansen, Karsten;
Limborg, Morten T..
(2021)
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts.
Communications Biology.
volum 4.
Academic article
-
Rawlence, Nicolas J.;
Knapp, Michael;
Martin, Michael David;
Wales, Nathan.
(2021)
Applied Uses of Ancient DNA.
Frontiers in Ecology and Evolution.
volum 9.
Academic article
-
Ristaino, Jean B.;
Anderson, Pamela;
Bebber, Daniel;
Brauman, Kate;
Cunniffe, Nik;
Fedoroff, Nina;
Finegold, Cambria;
Garrett, Karen A.;
Gilligan, Christopher;
Jones, Christopher M.;
Martin, Michael David;
MacDonald, Graham K.;
Neenan, Patricia;
Records, Angela;
Schmale, David G.;
Tateosian, Laura;
Wei, Qingshan.
(2021)
The persistent threat of emerging plant disease pandemics to global food security.
Proceedings of the National Academy of Sciences of the United States of America.
volum 118 (23).
Academic article
-
Speed, James David Mervyn;
Chimal Ballesteros, Jesus Adrian;
Martin, Michael David;
Barrio, Isabel C.;
Vuorinen, Katariina Elsa Maria;
Soininen, Eeva Marjatta.
(2021)
Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?.
Global Change Biology.
volum 27 (24).
Academic article
2020
-
Bakker, Freek T.;
Martin, Michael David;
Bieker, Vanessa Carina.
(2020)
Herbarium Collection-Based Plant Evolutionary Genetics and Genomics.
Frontiers in Ecology and Evolution.
volum 8.
Editorial
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Barnett, Ross;
Westbury, Michael V;
Sandoval-Velasco, Marcela;
Vieira, Filipe G.;
Jeon, Sungwon;
Zazula, Grant;
Martin, Michael David;
Ho, Simon Y.W.;
Mather, Niklas;
Gopalakrishnan, Shyam;
Ramos-Madrigal, Jazmín;
de Manuel, Marc;
Zepeda-Mendoza, Marie Lisandra;
Antunes, Agostinho;
Carmona Baez, Aldo;
De Cahsan, Binia;
Larson, Greger;
O'Brien, Stephen J.;
Eizirik, Eduardo.
(2020)
Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens.
Current Biology.
volum 30 (24).
Academic article
-
Bieker, Vanessa Carina;
Sánchez Barreiro, Fatima;
Rasmussen, Jacob Agerbo;
Brunier, Marie;
Wales, Nathan;
Martin, Michael David.
(2020)
Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community.
Molecular Ecology Resources.
volum 20.
Academic article
-
de Manuel, Marc;
Barnett, Ross;
Sandoval-Velasco, Marcela;
Yamaguchi, Nobuyuki;
Vieira, Filipe G.;
Lisandra Zepeda Mendoza, Zepeda;
Liu, Shiping;
Martin, Michael David;
Sinding, Mikkel-Holger S.;
Mak, Sarah Siu Tze;
Carøe, Christian;
Liu, Shanlin;
Guo, Chunxue;
Zheng, Jiao;
Zazula, Grant;
Baryshnikov, Gennady;
Eizirik, Eduardo;
Koepfli, Klaus-Peter;
Johnson, Warren E..
(2020)
The evolutionary history of extinct and living lions.
Proceedings of the National Academy of Sciences of the United States of America.
volum 117 (20).
Academic literature review
-
Dehasque, Marianne;
Ávila-Arcos, María C;
Díez-del-Molino, David;
Fumagalli, Matteo;
Guschanski, Katerina;
Lorenzen, Eline D.;
Malaspinas, Anna-Sapfo;
Marques-Bonet, Tomas;
Martin, Michael David;
Murray, Gemma G.R.;
Papadopulos, Alexander;
Therkildsen, Nina Overgaard;
Wegmann, Daniel;
Dalén, Love;
Foote, Andrew.
(2020)
Inference of natural selection from ancient DNA.
Evolution Letters.
volum 4 (2).
Academic article
-
Kistler, Logan;
Bieker, Vanessa Carina;
Martin, Michael David;
Pedersen, Mikkel Winther;
Madrigal, Jazmín Ramos;
Wales, Nathan.
(2020)
Ancient plant genomics in archaeology, herbaria, and the environment.
Annual Review of Plant Biology.
volum 71.
Academic article
2019
-
Foote, Andrew D.;
Martin, Michael David;
Louis, Marie;
Pacheco, George;
Robertson, Kelly M.;
Sinding, Mikkel-Holger;
Amaral, Ana R.;
Baird, Robin;
Baker, Charles;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Dabin, Willy;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John W.;
Esteban, Ruth.
(2019)
Killer whale genomes reveal a complex history of recurrent admixture and vicariance.
Molecular Ecology.
volum 28 (14).
Academic article
-
Maurice, Sundy Ursula Mary Jane;
Montes, Melanie;
Nielsen, Bent J.;
Bødker, Lars;
Martin, Michael David;
Jønck, Carina;
Kjøller, Rasmus;
Rosendahl, Søren.
(2019)
Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity.
Molecular plant pathology.
volum 20 (8).
Academic article
-
Mienna, Ida Marielle;
Speed, James David Mervyn;
Bendiksby, Mika;
Thornhill, Andrew H.;
Mishler, Brent D.;
Martin, Michael David.
(2019)
Differential patterns of floristic phylogenetic diversity across a post-glacial landscape.
Journal of Biogeography.
volum 47.
Academic article
-
Speed, James David Mervyn;
Skjelbred, Ina Åsnes;
Barrio, Isabel C.;
Martin, Michael David;
Berteaux, Dominique;
Bueno, C. Guillermo;
Christie, Katie S.;
Forbes, Bruce C.;
Forbey, Jennifer;
Fortin, Daniel;
Grytnes, John-Arvid;
Hoset, Katrine Skamfer;
Lecomte, Nicolas;
Marteinsdóttir, Bryndís;
Mosbacher, Jesper Bruun;
Pedersen, Åshild Ønvik;
Ravolainen, Virve;
Rees, Eileen C.;
Skarin, Anna.
(2019)
Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome.
Ecography.
volum 42 (6).
Academic article
-
Thomas, Jessica E.;
Carvalho, Gary R.;
Haile, James;
Rawlence, Nicolas J.;
Martin, Michael David;
Ho, Simon Y.W.;
Sigfússon, Arnór Þ.;
Jósefsson, Vigfús A.;
Frederiksen, Morten;
Linnebjerg, Jannie F.;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel-Holger S.;
Sandoval-Velasco, Marcela;
Soares, André E.R.;
Lacy, Robert;
Barilaro, Christina;
Best, Julia;
Brandis, Dirk.
(2019)
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk.
eLIFE.
volum 8:e47509.
Academic article
2018
-
Bieker, Vanessa Carina;
Martin, Michael David.
(2018)
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections.
Botany Letters.
volum 165 (3-4).
Academic article
-
Martin, Michael David;
Quiroz-Claros, Elva;
Brush, Grace S.;
Zimmer, Elizabeth A..
(2018)
Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae).
Molecular Phylogenetics and Evolution.
volum 120.
Academic article
-
O’Hanlon, Simon J;
Rieux, Adrien;
Farrer, Rhys A;
Rosa, Gonçalo M;
Waldman, Bruce;
Bataille, Arnaud;
Kosch, Tiffany A;
Murray, Kris A;
Brankovics, Balázs;
Fumagalli, Matteo;
Martin, Michael David;
Wales, Nathan;
Alvarado-Rybak, Mario;
Bates, Kieran A.;
Berger, Lee R.;
Böll, Susanne;
Brookes, Lola;
Clare, Frances;
Courtois, Elodie A..
(2018)
Recent Asian origin of chytrid fungi causing global amphibian declines.
Science.
volum 360.
Academic article
2017
-
Grube, Martin;
Gaya, Ester;
Kauserud, Håvard;
Smith, Adrian M.;
Avery, Simon V.;
Fernstad, Sara F.;
Muggia, Lucia;
Martin, Michael David;
Eivindsen, Tove;
Kõljalg, Urmas;
Bendiksby, Mika.
(2017)
The next generation fungal diversity researcher.
Fungal Biology Reviews.
volum 31 (3).
Academic literature review
-
Martin, Michael David;
Jay, Flora;
Castellano, Sergi;
Slatkin, Montgomery.
(2017)
Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations.
Molecular Ecology.
volum 26 (16).
Academic article
-
Sánchez Barreiro, Fatima;
Vieira, Filipe G.;
Martin, Michael D.;
Haile, James;
Gilbert, Marcus Thomas Pius;
Wales, Nathan.
(2017)
Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.
Molecular Ecology Resources.
volum 17 (2).
Academic article
-
Thomas, Jessica E;
Carvalho, Gary R.;
Haile, James;
Martin, Michael David;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel Holger Strander;
Sandoval-Velasco, Marcela;
Rawlence, Nicolas J.;
Fuller, Errol;
Fjeldså, Jon;
Hofreiter, Michael;
Stewart, John R;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2017)
An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks.
Genes.
volum 8 (6).
Academic article
2016
-
Foote, Andy;
Vijay, Nagarjun;
Avila-Arcos, Maria;
Baird, Robin;
Durban, John;
Morin, Phillip;
Fumagalli, Matteo;
Gibbs, Richard;
Hanson, Bradley;
Korneliussen, Thorfinn;
Martin, Michael D.;
Robertson, Kelly;
Sousa, Vitor;
Vieira, Filipe G.;
Vinar, Tomas;
Wade, Paul;
Worley, Kim;
Excoffier, Laurent;
Gilbert, M Thomas P.
(2016)
Genome-culture coevolution drives rapid divergence in the killer whale.
Nature Communications.
volum 7.
Academic article
-
Martin, Michael D;
Olsen, Morten T;
Samaniego, Jose;
Zimmer, Elizabeth A;
Gilbert, Marcus Thomas Pius.
(2016)
The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).
Ecology and Evolution.
volum 6 (11).
Academic article
-
Martin, Michael D;
Vieira, Filipe G;
Ho, Simon Y W;
Wales, Nathan;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2016)
Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans.
Molecular Biology and Evolution (MBE).
volum 33.
Academic article
-
Saville, Amanda;
Martin, Michael David;
Ristaino, Jean B..
(2016)
Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary.
PLOS ONE.
volum 11:e0168381 (12).
Academic literature review
2015
-
Der Sarkissian, Clio;
Allentoft, M;
Campos, Paula F;
Cappellini, Enrico;
Ermini, Luca;
Fernandez, Ruth;
Hansen, Anders J;
Korneliussen, Thorfinn;
Margaryan, Ashot;
Martin, Michael D;
Moreno-Mayar, J V;
Raghavan, Maanasa;
Rasmussen, Morten;
Velasco, Marcela Sandoval;
Schroeder, Hannes;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Wales, Nathan;
Gilbert, M Thomas P.
(2015)
Ancient genomics.
Philosophical Transactions of the Royal Society of London. Biological Sciences.
volum 370.
Academic literature review
2014
-
Martin, Michael D;
Ho, Simon Y W;
Wales, Nathan;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2014)
Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World.
Molecular Biology and Evolution (MBE).
volum 31.
Academic article
-
Martin, Michael D;
Zimmer, Elizabeth A;
Olsen, Morten T;
Foote, Andrew D;
Gilbert, M Thomas P;
Brush, Grace S.
(2014)
Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance.
Molecular Ecology.
volum 23.
Academic article
-
Schubert, Mikkel;
Ermini, Luca;
Der Sarkissian, Clio;
Jónsson, Hákon;
Ginolhac, Aurélien;
Schaefer, Robert;
Fernández, Ruth;
Martin, Michael D;
Kircher, Martin;
McCue, Molly E;
Willerslev, Eske;
Orlando, Ludovic.
(2014)
Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses.
Nature Protocols.
volum 9.
Academic article
-
Zhang, Guojie;
Martin, Michael D;
et al., -.
(2014)
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
volum 346 (6215).
Academic article
2013
-
Martin, Michael D;
Cappellini, Enrico;
Samaniego, Jose;
Zepeda, M. Lisandra;
Campos, Paula F;
Seguin-Orlando, Andaine;
Wales, Nathan;
Orlando, Ludovic;
Ho, Simon Y W;
Dietrich, Fred S;
Mieczkowski, Piotr A;
Heitman, Joseph;
Willerslev, Eske;
Krogh, Anders;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2013)
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.
Nature Communications.
volum 4.
Academic article
2010
-
Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace.
(2010)
Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal.
Agricultural and Forest Meteorology.
volum 150.
Academic article
2009
-
Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace;
Meneveau, Charles;
Parlange, Marc.
(2009)
Pollen clumping and wind dispersal in an invasive angiosperm.
American Journal of Botany.
volum 96.
Academic article
Journal publications
-
Battlay, Paul;
Wilson, Jonathan;
Bieker, Vanessa Carina;
Lee, Christopher;
Prapas, Diana;
Petersen, Bent;
Craig, Sam;
van Boheemen, Lotte;
Scalone, Romain;
de Silva, Nissanka;
Sharma, Amit;
Konstantinovic, Bojan;
Nurkowski, Kristin;
Rieseberg, Loren H.;
Connallon, Tim;
Martin, Michael David;
Hodgins, Kathryn A..
(2023)
Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia.
Nature Communications.
volum 14 (1).
Academic article
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Brandslet, Steinar;
Martin, Michael David;
Bieker, Vanessa Carina.
(2023)
Supergenes helped bring alien plant to Norway.
Gemini (English edition).
Popular scientific article
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Cerca Monteiro De Oliveira, José Pedro;
Cotoras, Darko;
Bieker, Vanessa Carina;
De-Kayne, Rishi;
Vargas, Pablo;
Fernández-Mazuecos, Mario;
López-Delgado, Julia;
White, Oliver;
Stervander, Martin;
Geneva, Anthony J.;
Andino, Juan E. Guevara;
Meier, Joana Isabel;
Roeble, Lizzie;
Brée, Baptiste;
Patiño, Jairo;
Guayasamin, Juan M.;
de Lourdes Torres, María;
Valdebenito, Hugo;
Castañeda, María del Rosario.
(2023)
Evolutionary genomics of oceanic island radiations.
Trends in Ecology & Evolution.
Academic literature review
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Hansen, Charles Christian Riis;
Láruson, Áki Jarl;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Sinding, Mikkel Holger Strander;
Hallgrimsson, Gunnar T.;
von Schmalensee, Menja;
Stefansson, Robert A.;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Sonne, Christian;
Dietz, Rune;
Skelmose, Kim;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Helgason, Agnar S.;
Gilbert, Marcus Thomas Pius.
(2023)
Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla).
Molecular Ecology.
volum 32.
Academic article
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Zhang, Pei;
Zhu, Yuanzhen;
Guo, Qunfei;
Li, Ji;
Zhan, Xiaoyu;
Yu, Hao;
Xie, Nianxia;
Tan, Huishuang;
Lundholm, Nina;
Garcia-Cuetos, Lydia;
Martin, Michael David;
Antó Subirats, Meritxell;
Su, Yi-Hsien;
Ruiz-Trillo, Iñaki;
Martindale, Mark Q.;
Yu, Jr-Kai;
Gilbert, M. Thomas P.;
Zhang, Guojie;
Li, Qiye.
(2023)
On the origin and evolution of RNA editing in metazoans.
Cell reports.
volum 42 (2).
Academic article
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Bieker, Vanessa Carina;
Battlay, Paul;
Petersen, Bent;
Sun, Xin;
Wilson, Jonathan;
Brealey, Jaelle C.;
Bretagnolle, François;
Nurkowski, Kristin;
Lee, Chris;
Sánchez Barreiro, Fatima;
Owens, Gregory;
Lee, Jacqueline;
Kellner, Fabian Laszlo;
van Boheeman, Lotte;
Gopalakrishnan, Shyam;
Gaudeul, Myriam;
Mueller-Schaerer, Heinz;
Lommen, Suzanne;
Karrer, Gerhard.
(2022)
Uncovering the genomic basis of an extraordinary plant invasion.
Science Advances.
volum 8 (34).
Academic article
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Brandslet, Steinar;
Cerca Monteiro De Oliveira, José Pedro;
Martin, Michael David.
(2022)
Darwin’s giant daises and evolution.
Gemini (English edition).
Popular scientific article
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Brealey, Jaelle;
Lecaudey, Laurene Alicia;
Kodama, Miyako;
Rasmussen, Jacob A.;
Sveier, Harald;
Dheilly, Nolwenn M.;
Martin, Michael David;
Limborg, Morten Tønsberg.
(2022)
Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host.
mBio.
volum 13 (3).
Academic article
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Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel;
Li, Siyu;
Li, Qionghou;
Loureiro, João;
Kosawang, Chatchai;
Jaramillo Díaz, Patricia;
Rivas-Torres, Gonzalo;
Fernández-Mazuecos, Mario;
Vargas, Pablo;
McCauley, Ross;
Petersen, Gitte;
Santos-Bay, Luisa;
Wales, Nathan;
Catchen, Julian M..
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications.
volum 13.
Academic article
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Gopalakrishnan, Shyam;
Ebenesersdottir, S.Sunna;
Lundstrøm, Inge K.C.;
Turner-Walker, Gordon;
Moore, Kristjan H.S.;
Luisi, Pierre;
Magaryan, Ashot;
Martin, Michael David;
Ellegaard, Martin Rene;
Magnusson, Olafur T.;
Sigurdsson, Asgeir;
Snorradóttir, Steinunn;
Magnúsdóttir, Droplaug N.;
Laffoon, Jason E.;
van Dorp, Lucy;
Liu, Xiaodong;
Moltke, Ida;
Avila-Arcos, María C.;
Schraiber, Joshua G..
(2022)
The population genomic legacy of the second plague pandemic.
Current Biology.
volum 32.
Academic article
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Hansen, Charles Christian Riis;
Baleka, Sina;
Magnea Guðjónsdóttir, Sólveig;
Agerbo Rasmussen, Jacob;
Chimal Ballesteros, Jesus Adrian;
Thor Hallgrimsson, Gunnar;
Stefansson, Robert A.;
Von Schmalensee, Menja;
Haukur Skarphedinsson, Kristinn;
Lage Labansen, Aili;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2022)
Erratum to: Distinctive mitogenomic lineages within populations of White-tailed Eagles(Ornithology DOI: 10.1093/ornithology/ukab081).
The AUK: A Quarterly Journal of Ornithology.
volum 139 (3).
Errata
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Malmstrom, Carolyn;
Martin, Michael David;
Gagnevin, Lionel.
(2022)
Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources.
Annual Review of Phytopathology.
volum 60.
Academic literature review
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Nygaard, Malene;
Kopatz, Alexander;
Speed, James David Mervyn;
Martin, Michael David;
Prestø, Tommy;
Kleven, Oddmund;
Bendiksby, Mika.
(2022)
Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens.
Ecology and Evolution.
volum 12 (8).
Academic article
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Aguilar Tomasini, Maria Alejandra;
Martin, Michael David;
Speed, James David Mervyn.
(2021)
Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation.
Global Ecology and Conservation.
volum 31.
Academic article
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Foote, Andrew;
Gilbert, Marcus Thomas Pius;
Gopalakrishnan, Shyam;
Louis, Marie;
Martin, Michael David;
Morin, Phillip A.;
Nykänen, Milaja;
Scharff-Olsen, Camilla;
Excoffier, Laurent.
(2021)
Evidence of long-term purging of mutation load in killer whale genomes.
bioRxiv - the preprint server for biology.
Academic article
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Foote, Andrew;
Hooper, Rebecca;
Alexander, Alana;
Baird, Robin;
Baker, Charles Scott;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John;
Esteban, Ruth;
Excoffier, Laurent;
Martin, Sarah;
Forney, Karin A.;
Gerrodette, Tim;
Gilbert, Marcus Thomas Pius.
(2021)
Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
Molecular Ecology.
volum 30 (23).
Academic article
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Hansen, Charles Christian Riis;
Baleka, Sina;
Gudjonsdottir, Solveig Magnea;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Hallgrimsson, Gunnar Thor;
Stefansson, Robert A.;
von Schmalensee, Menja;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2021)
Distinctive mitogenomic lineages within populations of white-tailed eagles (Haliaeetus albicilla).
Journal of Ornithology.
volum 139 (2).
Academic article
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Meleshko, Olena;
Martin, Michael David;
Korneliussen, Thorfinn Sand;
Schröck, Christian;
Lamkowski, Paul;
Schmutz, Jeremy;
Healey, Adam;
Piatkowski, Bryan T;
Shaw, A. Jonathan;
Weston, David J;
Flatberg, Kjell Ivar;
Szövényi, Péter;
Hassel, Kristian;
Stenøien, Hans K..
(2021)
Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus.
Molecular Biology and Evolution (MBE).
volum 38 (7).
Academic article
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Rasmussen, Jacob A.;
Villumsen, Kasper Rømer;
Duchêne, David;
Puetz, Lara;
Delmont, Tom;
Sveier, Harald;
von Gersdorff Jørgensen, Louise;
Præbel, Kim;
Martin, Michael David;
Bojesen, Anders Miki;
Gilbert, Marcus Thomas Pius;
Kristiansen, Karsten;
Limborg, Morten T..
(2021)
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts.
Communications Biology.
volum 4.
Academic article
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Rawlence, Nicolas J.;
Knapp, Michael;
Martin, Michael David;
Wales, Nathan.
(2021)
Applied Uses of Ancient DNA.
Frontiers in Ecology and Evolution.
volum 9.
Academic article
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Ristaino, Jean B.;
Anderson, Pamela;
Bebber, Daniel;
Brauman, Kate;
Cunniffe, Nik;
Fedoroff, Nina;
Finegold, Cambria;
Garrett, Karen A.;
Gilligan, Christopher;
Jones, Christopher M.;
Martin, Michael David;
MacDonald, Graham K.;
Neenan, Patricia;
Records, Angela;
Schmale, David G.;
Tateosian, Laura;
Wei, Qingshan.
(2021)
The persistent threat of emerging plant disease pandemics to global food security.
Proceedings of the National Academy of Sciences of the United States of America.
volum 118 (23).
Academic article
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Speed, James David Mervyn;
Chimal Ballesteros, Jesus Adrian;
Martin, Michael David;
Barrio, Isabel C.;
Vuorinen, Katariina Elsa Maria;
Soininen, Eeva Marjatta.
(2021)
Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?.
Global Change Biology.
volum 27 (24).
Academic article
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Bakker, Freek T.;
Martin, Michael David;
Bieker, Vanessa Carina.
(2020)
Herbarium Collection-Based Plant Evolutionary Genetics and Genomics.
Frontiers in Ecology and Evolution.
volum 8.
Editorial
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Barnett, Ross;
Westbury, Michael V;
Sandoval-Velasco, Marcela;
Vieira, Filipe G.;
Jeon, Sungwon;
Zazula, Grant;
Martin, Michael David;
Ho, Simon Y.W.;
Mather, Niklas;
Gopalakrishnan, Shyam;
Ramos-Madrigal, Jazmín;
de Manuel, Marc;
Zepeda-Mendoza, Marie Lisandra;
Antunes, Agostinho;
Carmona Baez, Aldo;
De Cahsan, Binia;
Larson, Greger;
O'Brien, Stephen J.;
Eizirik, Eduardo.
(2020)
Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens.
Current Biology.
volum 30 (24).
Academic article
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Bieker, Vanessa Carina;
Sánchez Barreiro, Fatima;
Rasmussen, Jacob Agerbo;
Brunier, Marie;
Wales, Nathan;
Martin, Michael David.
(2020)
Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community.
Molecular Ecology Resources.
volum 20.
Academic article
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de Manuel, Marc;
Barnett, Ross;
Sandoval-Velasco, Marcela;
Yamaguchi, Nobuyuki;
Vieira, Filipe G.;
Lisandra Zepeda Mendoza, Zepeda;
Liu, Shiping;
Martin, Michael David;
Sinding, Mikkel-Holger S.;
Mak, Sarah Siu Tze;
Carøe, Christian;
Liu, Shanlin;
Guo, Chunxue;
Zheng, Jiao;
Zazula, Grant;
Baryshnikov, Gennady;
Eizirik, Eduardo;
Koepfli, Klaus-Peter;
Johnson, Warren E..
(2020)
The evolutionary history of extinct and living lions.
Proceedings of the National Academy of Sciences of the United States of America.
volum 117 (20).
Academic literature review
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Dehasque, Marianne;
Ávila-Arcos, María C;
Díez-del-Molino, David;
Fumagalli, Matteo;
Guschanski, Katerina;
Lorenzen, Eline D.;
Malaspinas, Anna-Sapfo;
Marques-Bonet, Tomas;
Martin, Michael David;
Murray, Gemma G.R.;
Papadopulos, Alexander;
Therkildsen, Nina Overgaard;
Wegmann, Daniel;
Dalén, Love;
Foote, Andrew.
(2020)
Inference of natural selection from ancient DNA.
Evolution Letters.
volum 4 (2).
Academic article
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Kistler, Logan;
Bieker, Vanessa Carina;
Martin, Michael David;
Pedersen, Mikkel Winther;
Madrigal, Jazmín Ramos;
Wales, Nathan.
(2020)
Ancient plant genomics in archaeology, herbaria, and the environment.
Annual Review of Plant Biology.
volum 71.
Academic article
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Foote, Andrew D.;
Martin, Michael David;
Louis, Marie;
Pacheco, George;
Robertson, Kelly M.;
Sinding, Mikkel-Holger;
Amaral, Ana R.;
Baird, Robin;
Baker, Charles;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Dabin, Willy;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John W.;
Esteban, Ruth.
(2019)
Killer whale genomes reveal a complex history of recurrent admixture and vicariance.
Molecular Ecology.
volum 28 (14).
Academic article
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Maurice, Sundy Ursula Mary Jane;
Montes, Melanie;
Nielsen, Bent J.;
Bødker, Lars;
Martin, Michael David;
Jønck, Carina;
Kjøller, Rasmus;
Rosendahl, Søren.
(2019)
Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity.
Molecular plant pathology.
volum 20 (8).
Academic article
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Mienna, Ida Marielle;
Speed, James David Mervyn;
Bendiksby, Mika;
Thornhill, Andrew H.;
Mishler, Brent D.;
Martin, Michael David.
(2019)
Differential patterns of floristic phylogenetic diversity across a post-glacial landscape.
Journal of Biogeography.
volum 47.
Academic article
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Speed, James David Mervyn;
Skjelbred, Ina Åsnes;
Barrio, Isabel C.;
Martin, Michael David;
Berteaux, Dominique;
Bueno, C. Guillermo;
Christie, Katie S.;
Forbes, Bruce C.;
Forbey, Jennifer;
Fortin, Daniel;
Grytnes, John-Arvid;
Hoset, Katrine Skamfer;
Lecomte, Nicolas;
Marteinsdóttir, Bryndís;
Mosbacher, Jesper Bruun;
Pedersen, Åshild Ønvik;
Ravolainen, Virve;
Rees, Eileen C.;
Skarin, Anna.
(2019)
Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome.
Ecography.
volum 42 (6).
Academic article
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Thomas, Jessica E.;
Carvalho, Gary R.;
Haile, James;
Rawlence, Nicolas J.;
Martin, Michael David;
Ho, Simon Y.W.;
Sigfússon, Arnór Þ.;
Jósefsson, Vigfús A.;
Frederiksen, Morten;
Linnebjerg, Jannie F.;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel-Holger S.;
Sandoval-Velasco, Marcela;
Soares, André E.R.;
Lacy, Robert;
Barilaro, Christina;
Best, Julia;
Brandis, Dirk.
(2019)
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk.
eLIFE.
volum 8:e47509.
Academic article
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Bieker, Vanessa Carina;
Martin, Michael David.
(2018)
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections.
Botany Letters.
volum 165 (3-4).
Academic article
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Martin, Michael David;
Quiroz-Claros, Elva;
Brush, Grace S.;
Zimmer, Elizabeth A..
(2018)
Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae).
Molecular Phylogenetics and Evolution.
volum 120.
Academic article
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O’Hanlon, Simon J;
Rieux, Adrien;
Farrer, Rhys A;
Rosa, Gonçalo M;
Waldman, Bruce;
Bataille, Arnaud;
Kosch, Tiffany A;
Murray, Kris A;
Brankovics, Balázs;
Fumagalli, Matteo;
Martin, Michael David;
Wales, Nathan;
Alvarado-Rybak, Mario;
Bates, Kieran A.;
Berger, Lee R.;
Böll, Susanne;
Brookes, Lola;
Clare, Frances;
Courtois, Elodie A..
(2018)
Recent Asian origin of chytrid fungi causing global amphibian declines.
Science.
volum 360.
Academic article
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Grube, Martin;
Gaya, Ester;
Kauserud, Håvard;
Smith, Adrian M.;
Avery, Simon V.;
Fernstad, Sara F.;
Muggia, Lucia;
Martin, Michael David;
Eivindsen, Tove;
Kõljalg, Urmas;
Bendiksby, Mika.
(2017)
The next generation fungal diversity researcher.
Fungal Biology Reviews.
volum 31 (3).
Academic literature review
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Martin, Michael David;
Jay, Flora;
Castellano, Sergi;
Slatkin, Montgomery.
(2017)
Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations.
Molecular Ecology.
volum 26 (16).
Academic article
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Sánchez Barreiro, Fatima;
Vieira, Filipe G.;
Martin, Michael D.;
Haile, James;
Gilbert, Marcus Thomas Pius;
Wales, Nathan.
(2017)
Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.
Molecular Ecology Resources.
volum 17 (2).
Academic article
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Thomas, Jessica E;
Carvalho, Gary R.;
Haile, James;
Martin, Michael David;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel Holger Strander;
Sandoval-Velasco, Marcela;
Rawlence, Nicolas J.;
Fuller, Errol;
Fjeldså, Jon;
Hofreiter, Michael;
Stewart, John R;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2017)
An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks.
Genes.
volum 8 (6).
Academic article
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Foote, Andy;
Vijay, Nagarjun;
Avila-Arcos, Maria;
Baird, Robin;
Durban, John;
Morin, Phillip;
Fumagalli, Matteo;
Gibbs, Richard;
Hanson, Bradley;
Korneliussen, Thorfinn;
Martin, Michael D.;
Robertson, Kelly;
Sousa, Vitor;
Vieira, Filipe G.;
Vinar, Tomas;
Wade, Paul;
Worley, Kim;
Excoffier, Laurent;
Gilbert, M Thomas P.
(2016)
Genome-culture coevolution drives rapid divergence in the killer whale.
Nature Communications.
volum 7.
Academic article
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Martin, Michael D;
Olsen, Morten T;
Samaniego, Jose;
Zimmer, Elizabeth A;
Gilbert, Marcus Thomas Pius.
(2016)
The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).
Ecology and Evolution.
volum 6 (11).
Academic article
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Martin, Michael D;
Vieira, Filipe G;
Ho, Simon Y W;
Wales, Nathan;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2016)
Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans.
Molecular Biology and Evolution (MBE).
volum 33.
Academic article
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Saville, Amanda;
Martin, Michael David;
Ristaino, Jean B..
(2016)
Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary.
PLOS ONE.
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Academic literature review
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Cappellini, Enrico;
Ermini, Luca;
Fernandez, Ruth;
Hansen, Anders J;
Korneliussen, Thorfinn;
Margaryan, Ashot;
Martin, Michael D;
Moreno-Mayar, J V;
Raghavan, Maanasa;
Rasmussen, Morten;
Velasco, Marcela Sandoval;
Schroeder, Hannes;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Wales, Nathan;
Gilbert, M Thomas P.
(2015)
Ancient genomics.
Philosophical Transactions of the Royal Society of London. Biological Sciences.
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Academic literature review
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Martin, Michael D;
Ho, Simon Y W;
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Ristaino, Jean B;
Gilbert, M Thomas P.
(2014)
Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World.
Molecular Biology and Evolution (MBE).
volum 31.
Academic article
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Martin, Michael D;
Zimmer, Elizabeth A;
Olsen, Morten T;
Foote, Andrew D;
Gilbert, M Thomas P;
Brush, Grace S.
(2014)
Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance.
Molecular Ecology.
volum 23.
Academic article
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Schubert, Mikkel;
Ermini, Luca;
Der Sarkissian, Clio;
Jónsson, Hákon;
Ginolhac, Aurélien;
Schaefer, Robert;
Fernández, Ruth;
Martin, Michael D;
Kircher, Martin;
McCue, Molly E;
Willerslev, Eske;
Orlando, Ludovic.
(2014)
Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses.
Nature Protocols.
volum 9.
Academic article
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Zhang, Guojie;
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(2014)
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
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Academic article
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Martin, Michael D;
Cappellini, Enrico;
Samaniego, Jose;
Zepeda, M. Lisandra;
Campos, Paula F;
Seguin-Orlando, Andaine;
Wales, Nathan;
Orlando, Ludovic;
Ho, Simon Y W;
Dietrich, Fred S;
Mieczkowski, Piotr A;
Heitman, Joseph;
Willerslev, Eske;
Krogh, Anders;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2013)
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.
Nature Communications.
volum 4.
Academic article
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Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace.
(2010)
Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal.
Agricultural and Forest Meteorology.
volum 150.
Academic article
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Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace;
Meneveau, Charles;
Parlange, Marc.
(2009)
Pollen clumping and wind dispersal in an invasive angiosperm.
American Journal of Botany.
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Academic article
Media
2023
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PosterBurnett, Hamish Andrew; Bieker, Vanessa Carina; Le Moullec, Mathilde; Peeters, Bart; Rosvold, Jørgen; Pedersen, Åshild Ønvik; Dalén, Love; Loe, Leif Egil; Jensen, Henrik; Hansen, Brage Bremset; Martin, Michael David. (2023) Contrasting genomic consequences of anthropogenic reintroduction and natural recolonisation in high-arctic wild reindeer. OIKOS Norway 2023 . Norwegian University of Life Sciences; Ås, Norway. 2023-02-13 - 2023-02-15.
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Academic lectureKellner, Fabian Laszlo; Bieker, Vanessa Carina; Brealey, Jaelle; Martin, Michael David. (2023) The use of dental calculus in metagenomic research on ancient reindeer. North American Caribou Workshop and Arctic Ungulate Conference 2023 . Arctic Ungulate Society; Anchorage, Alaska, USA. 2023-05-08 - 2023-05-12.
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LectureKellner, Fabian Laszlo; Le Moullec, Mathilde; Bieker, Vanessa Carina; Hansen, Brage Bremset; Martin, Michael David. (2023) Including ancient DNA to understand implications of historical overharvest, recolonization and climate change for the genetic diversity and structure of high-Arctic wild Svalbard reindeer. North American Caribou Workshop/Arctic Ungulate Conference ; Anchorage, Alaska. 2023-05-08 - 2023-05-12.
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Academic lectureLefeuvre, Maël; Martin, Michael David; Jay, Flora; Marsolier, Marie-Claude; Bon, Céline. (2023) GRUPS-rs, a high-performance ancient DNA genetic relatedness estimation software relying on pedigree simulations. Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) . Société Française de BioInformatique (SFBI); Multiple locations. 2023-06-27 - 2023-06-30.
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Academic lectureMatten, Damaris Marina; Bendiksby, Mika; Martin, Michael David; Speed, James David Mervyn. (2023) Spatial patterns of species and phylogenetic diversity of vascular plants in Norway and Fennoscandia. 2023 ESA Annual Meeting . Ecological Society of America; Portland, Oregon. 2023-08-06 - 2023-08-11.
2022
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Academic lectureBieker, Vanessa Carina; Battlay, Paul; Petersen, Bent; Sun, Xin; Brealey, Jaelle C.; Hodgins, Kathryn A.; Martin, Michael David. (2022) Hologenomic analysis of hundreds of herbarium specimens reveals the genomic basis of a plant invasion. Applied Hologenomics Conference ; Bilbao. 2022-09-13 - 2022-09-15.
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Academic lectureBieker, Vanessa Carina; Martin, Michael David. (2022) Darwin’s giant daisies: Population genomics within the Scalesia genus. ForBio Annual meeting . ForBio; 2022-11-28 - 2022-11-30.
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Academic lectureBieker, Vanessa Carina; Martin, Michael David. (2022) Genome-metagenome association in the radiation of Darwin’s giant daisies. Galapagos research meeting ; 2022-11-15.
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Academic lectureBrealey, Jaelle; Kodama, Miyako; Rasmussen, Jacob A.; Hansen, Søren B.; Santos-Bay, Luisa; Hansen, Martin; Fjære, Even; Myrmel, Lene Secher; Madsen, Lise; Bernhard, Annette; Kristiansen, Karsten; Sveier, Harald; Gilbert, Marcus Thomas Pius; Martin, Michael David; Limborg, Morten T.. (2022) Leveraging microbiota services through hologenomic analyses to improve gut health in farmed salmon. Applied Hologenomics Conference . HoloFood; Bilbao, Spain. 2022-09-14 - 2022-09-14.
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PosterBrealey, Jaelle; Lecaudey, Laurene Alicia; Kodama, Miyako; Rasmussen, Jacob A; Hansen, Martin; Sveier, Harald; Dheilly, Nolwenn M.; Martin, Michael David; Limborg, Morten T.. (2022) Hologenomic Approach to Understanding Cestode Infections in Farmed Atlantic Salmon. International Congress of Parasitology . World Federation of Parasitologists; Copenhagen, Denmark. 2022-08-22 - 2022-08-22.
2021
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Academic lectureBrealey, Jaelle; Lecaudey, Laurene Alicia; Kodama, Miyako; Rasmussen, Jacob A.; Sveier, Harald; Dheilly, Nolwenn M.; Martin, Michael David; Limborg, Morten T.. (2021) Microbiome inception: an intestinal cestode causes a hierarchical landscape of distinct microbial communities nested within farmed Atlantic salmon (Salmo salar). Aquaculture Europe 2021 . European Aquaculture Society; Funchal, Madeira. 2021-10-04 - 2021-10-07.
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Academic lectureBrealey, Jaelle; Lecaudey, Laurene Alicia; Kodama, Miyako; Rasmussen, Jacob A.; Sveier, Harald; Dheilly, Nolwenn M.; Martin, Michael David; Limborg, Morten T.. (2021) Microbiome inception: an intestinal cestode shapes a hierarchical landscape of distinct microbial communities nested within the host. European Multicolloquium of Parasitology 2021 . European Federation of Parasitologists; Belgrade. 2021-10-12 - 2021-10-16.
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Academic lectureCerca, José; Martin, Michael David. (2021) A chromosome-resolved genome of Darwin’s giant daisy trees (Scalesia) shows the genomic basis of the plant island syndrome. The International Compositae Alliance ; Online. 2021-10-25 - 2021-10-25.
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Academic lectureCerca, José; Martin, Michael David. (2021) Genome Evolution in Galápagos' Daisies. Department Seminar ; 2021-05-01 - 2021-05-01.
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LectureMartin, Michael David. (2021) An introduction to the ColdRein project. CBD lunch seminar series . Centre for Biodiversity Dynamics; Trondheim, Norway. 2021-10-12 - 2021-10-12.
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Academic lectureMartin, Michael David; Cerca, José; Bieker, Vanessa Carina. (2021) Holomuseomics group introduction and a glimpse into our plant-related activities. CEES Seminar Series . Centre for Ecological and Evolutionary Synthesis; University of Oslo. Oslo, Norway. 2021-02-05 - 2021-02-05.
2020
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PosterBieker, Vanessa Carina; Hodgins, Kathryn; Martin, Michael David. (2020) Assessing 180 years of genomic and metagenomic evolution in an invasive plant (Ambrosia artemisiifolia L.). SMBE 2020 Meeting ; Quebec City. 2020-06-28 - 2020-07-02.
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Academic lectureBieker, Vanessa Carina; Hodgins, Kathryn; Martin, Michael David. (2020) Inferring plant genome evolution of an invasive species (Ambrosia artemisiifolia L.) using historic herbarium specimens. Plant and Animal Genome XXVIII ; San Diego, California. 2020-01-11 - 2020-01-15.
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Academic lectureBrealey, Jaelle C.; Santos-Bay, Luisa; Rasmussen, Jacob A; Lecaudey, Laurene Alicia; Kristiansen, Karsten; Madsen, Lise; Fjære, Even; Secher Myrmel, Lene; Hansen, Martin; Sveier, Harald; Kodama, Miyako; Gilbert, Thomas; Limborg, Morten T.; Martin, Michael David. (2020) HoloFish: Microbiome-genomic co-optimisation to improve gut health in farmed salmon. SMBE 2020 Meeting ; Quebec City. 2020-06-28 - 2020-07-02.
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PosterMaria Alejandra, Aguila Tomasini; Martin, Michael David; Speed, James David Mervyn. (2020) Assessing spatial patterns of phylogenetic diversity in Mexican mammals for biodiversity conservation. Nordic Ecological Society Conference . Nordic Ecological Society; Reykjavik. 2020-03-03 - 2020-03-05.
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PosterMatten, Damaris Marina; Bendiksby, Mika; Martin, Michael David; Speed, James David Mervyn. (2020) Phylogenetic diversity of Fennoscandian vascular plants: Do we protect the relevant areas?. ForBio Annual meeting 2020 . ForBio - Research School in Biosystematics; 2020-12-03 - 2020-12-04.
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PosterMatten, Damaris Marina; Bendiksby, Mika; Martin, Michael David; Speed, James David Mervyn. (2020) Phylogenetic diversity of Fennoscandian vascular plants: Do we protect the relevant areas?. Festival of Ecoolgy 2020 . British Ecological Society; 2020-12-14 - 2020-12-18.
2019
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PosterBallesteros, Jesús A.; Speed, James David Mervyn; Martin, Michael David. (2019) Arctic and boreal herbivore biodiversity: What drives it and where is it?. Norwegian Ecological Society . Norwegian Ecological Society; Tromsø. 2019-02-11 - 2019-02-13.
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Academic lectureBieker, Vanessa Carina; Sánchez Barreiro, Fatima; Brunier, Marie; Wales, Nathan; Martin, Michael David. (2019) Metagenomic analysis reveals a postmortem microbial community in historical herbarium specimens. ForBio Annual Meeting 2019 ; Trondheim. 2019-04-08 - 2019-04-10.
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PosterJames, Doonan; Gilbert, Thomas; Budde, Katharina; Martin, Michael David; Heuertz, Myriam; Kosawang, Chatchai; Kjær, Erik Dahl; Nielsen, Lene Rostgaard. (2019) AshAdapt – Evolutionary potential of Fraxinus excelsior populations challenged by invasive pests and pathogens. NordGen Forest Conference 2019 ; Hveragerði. 2019-09-17 - 2019-09-19.
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Academic lectureMeleshko, Olena; Hassel, Kristian; Stenøien, Hans K.; Martin, Michael David; Szövényi, Péter. (2019) Speciation with gene flow in peatmosses - using whole genome sequencing to explore gene flow within and among species. ForBio Annual Meeting 2019 . ForBio, NTNU; Trondheim. 2019-04-08 - 2019-04-10.
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Academic lectureMeleshko, Olena; Hassel, Kristian; Stenøien, Hans K.; Martin, Michael David; Szövényi, Péter. (2019) Speciation with gene flow in peatmosses ‐ using whole genome sequencing to explore gene flow within and among species. International Association of Bryologists (IAB) and the International Molecular Moss Science Society Conference . International Association of Bryologists; Mardid, Spain. 2019-07-06 - 2019-07-13.
2018
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Academic lectureBieker, Vanessa Carina; Hodgins, Kathryn; Martin, Michael David. (2018) Using historical herbarium specimens of an invasive plant species (Ambrosia artemisiifolia L.) for evolutionary genomics. ForBio annual meeting 2018 . ForBio; Tromsø. 2018-02-12 - 2018-02-14.
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PosterMienna, Ida Marielle; Speed, James David Mervyn; Martin, Michael David; Bendiksby, Mika; Thornhill, Andrew H; Mishler, Brent D. (2018) Patterns and drivers of vascular plant phylogenetic diversity and endemism across Norway. Oikos 2018 ; Trondheim. 2018-02-20 - 2018-02-22.
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Academic lectureMienna, Ida Marielle; Speed, James David Mervyn; Martin, Michael David; Bendiksby, Mika; Thornhill, Andrew H; Mishler, Brent D. (2018) The Spatial Distribution Of Phylogenetic Diversity And Endemism In The Norwegian Vascular Flora. ForBio annual meeting 2018 ; Tromsø. 2018-02-12 - 2018-02-14.
2017
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PosterBieker, Vanessa C; Sánchez Barreiro, Fatima; Vieira, Filipe G.; Wales, Nathan; Bretagnolle, François; Gilbert, M. Thomas P.; Hodgins, Kathryn; Martin, Michael David. (2017) Using historical herbarium specimens to investigate plant genome evolution during parallel invasions (Ambrosia artemisiifolia L.). ForBio Annual Meeting 2017 . ForBio Research School in Biosystematics; Bergen. 2017-04-24 - 2017-04-26.
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LectureMartin, Michael David. (2017) Comparative and population genomic analyses of the Irish potato famine pathogen Phytophthora infestans. Séminare Genetrop . Institut de Recherche pour le Développement; Montpellier. 2017-04-25.
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Academic lectureMartin, Michael David. (2017) Genomic prospecting in herbarium collections. Botany Seminar series . Muséum National d'Histoire Naturelle; Paris. 2017-07-04.
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LectureMartin, Michael David. (2017) Genomic prospecting in natural history collections. Australian Tropical Herbarium Science Circle . Australian Tropical Herbarium / James Cook University; Cairns. 2017-01-27.
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LectureMartin, Michael David. (2017) Population genomics of the potato blight pathogen Phytophthora infestans. CIME/NFM Microbial Evolution meeting . CIME; Oslo. 2017-10-27.
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Academic lectureMartin, Michael David. (2017) Potentials for herbarium genetics and genomics. Herbarium genomics workshop . Australian Tropical Herbarium; Cairns. 2017-01-18 - 2017-01-18.
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LectureMartin, Michael David. (2017) Promise and prospects for genomic analyses from natural history collections. Norwegian Biochemical Society Trøndelag meeting 2017 . Norwegian Biochemical Society Trøndelag; Oppdall. 2017-03-22.
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LectureMartin, Michael David. (2017) Realizing the potential for herbarium collection-based genomic analyses. Seminar before PhD defense of Natalie Ahlstrand . Section for EvoGenomics, Natural History Museum of Denmark; Copenhagen. 2017-10-06.
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PosterMienna, Ida M; Thornhill, Andrew H; Mishler, Brent D; Bendiksby, Mika; Speed, James David Mervyn; Martin, Michael David. (2017) Spatial phylogenetics of the Norwegian vascular plant flora. 3rd Conference of the Norwegian Ecological Society . UiO Centre for Ecological and Evolutionary Synthesis; Oslo. 2017-01-12 - 2017-01-13.
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InterviewPappas, Stephanie; Martin, Michael David. (2017) Genetics say the origins of the Irish potato blight were South American. Washington Post [Avis]. 2017-01-07.
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PosterSkjelbred, Ina Å; Thornhill, Andrew H; Martin, Michael David; Speed, James David Mervyn. (2017) Phylogenetic diversity of Arctic vertebrate herbivores. 3rd Conference of the Norwegian Ecological Society . UiO Centre for Ecological and Evolutionary Synthesis; Oslo. 2017-01-12 - 2017-01-13.
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PosterSpeed, James David Mervyn; Soininen, Eeva M; Skjelbred, Ina Åsnes; Martin, Michael David; Barrio, Isabel C. (2017) Phylogenetic and functional composition of Arctic herbivore assemblages. 3rd Symposium on Ecological Networks and 3rd Symposium on Molecular Analysis . SLU; Uppsala. 2017-09-11 - 2017-09-15.
2016
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InterviewBrandslet, Steinar; Martin, Michael David. (2016) The potato plague that changed the world. Aftenposten Historie 8, pp. 40-41 [Tidsskrift]. 2016-08-01.
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InterviewBrandslet, Steinar; Martin, Michael David. (2016) The weeds that settlers spread. AlphaGalileo [Internett]. 2016-11-21.
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LectureMartin, Michael David. (2016) Common ragweed population genomics from historical herbarium vouchers. Botany 2016 . Botanical Society of America; Savannah, Georgia. 2016-07-30 - 2016-08-03.
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Academic lectureMartin, Michael David. (2016) Evolutionary genomics of Phytophthora infestans. Symposium on Emerging Plant Disease and Global Food Security . North Carolina State University; Raleigh, North Carolina. 2016-03-23 - 2016-03-24.
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Academic lectureMartin, Michael David. (2016) Herbarium specimen population genomics with a special focus on common ragweed. Ecology & Evolution Research Seminar Series . Department of Biology, University of Fribourg; Fribourg. 2016-05-12 - 2016-05-12.
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Academic lectureMartin, Michael David. (2016) Museum and herbarium collections as genomic repositories. ForBio Research School in Biosystematics Annual Meeting . Norwegian University of Science and Technology; Trondheim. 2016-04-25 - 2016-04-27.
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LectureMartin, Michael David. (2016) Phylogenomics and transcriptomics of Galápagos daisy trees. Botany 2016 . Botanical Society of America; Savannah, Georgia. 2016-07-30 - 2016-08-03.
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InterviewMartin, Michael David; Brandslet, Steinar. (2016) The potato disease that changed the world. Gemini [Internett]. 2016-06-01.
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PosterMartin, Michael David; Olsen, Morten Tange; Samaniego, Jose A; Zimmer, Elizabeth A; Gilbert, M Thomas P. (2016) The population genomic basis of geographic differentiation in North American common ragweed. Botany 2016 . Botanical Society of America; Savannah, Georgia. 2016-07-30 - 2016-08-03.