Michael D. Martin
About
Research in my lab involves analyzing genome sequences in order to reconstruct and interpret the evolutionary histories of plants, animals, and their pathogens. I am particularly attracted to cases in which ancient/degraded DNA derived from natural history collections allows us to explain present-day distributions of biodiversity by looking directly into the past.
Research opportunities for master students are available in the Holomuseomics research group. I encourage you to make contact if you are interested in becoming involved.
Publications
2022
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Bieker, Vanessa Carina;
Battlay, Paul;
Petersen, Bent;
Sun, Xin;
Wilson, Jonathan;
Brealey, Jaelle C.;
Bretagnolle, François;
Nurkowski, Kristin;
Lee, Chris;
Sánchez Barreiro, Fatima;
Owens, Gregory;
Lee, Jacqueline;
Kellner, Fabian Laszlo;
van Boheeman, Lotte;
Gopalakrishnan, Shyam;
Gaudeul, Myriam;
Mueller-Schaerer, Heinz;
Lommen, Suzanne;
Karrer, Gerhard;
Chauvel, Bruno;
Sun, Yan;
Konstantinovic, Bojan;
Dalén, Love;
Poczai, Péter;
Rieseberg, Loren H.;
Gilbert, Marcus Thomas Pius;
Hodgins, Kathryn A.;
Martin, Michael David.
(2022)
Uncovering the genomic basis of an extraordinary plant invasion.
Science Advances.
volum 8 (34).
Academic article
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Brealey, Jaelle;
Lecaudey, Laurene Alicia;
Kodama, Miyako;
Rasmussen, Jacob A.;
Sveier, Harald;
Dheilly, Nolwenn M.;
Martin, Michael David;
Limborg, Morten Tønsberg.
(2022)
Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host.
mBio.
volum 13 (3).
Academic article
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Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel;
Li, Siyu;
Li, Qionghou;
Loureiro, João;
Kosawang, Chatchai;
Jaramillo Díaz, Patricia;
Rivas-Torres, Gonzalo;
Fernández-Mazuecos, Mario;
Vargas, Pablo;
McCauley, Ross;
Petersen, Gitte;
Santos-Bay, Luisa;
Wales, Nathan;
Catchen, Julian M.;
Machado, Daniel;
Nowak, Michael;
Suh, Alexander;
Sinha, Neelima R.;
Rostgaard Nielsen, Lene;
Seberg, Ole;
Gilbert, Marcus Thomas Pius;
Leebens-Mack, James H.;
Rieseberg, Loren H.;
Martin, Michael David.
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications.
volum 13.
Academic article
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Gopalakrishnan, Shyam;
Ebenesersdottir, S.Sunna;
Lundstrøm, Inge K.C.;
Turner-Walker, Gordon;
Moore, Kristjan H.S.;
Luisi, Pierre;
Magaryan, Ashot;
Martin, Michael David;
Ellegaard, Martin Rene;
Magnusson, Olafur T.;
Sigurdsson, Asgeir;
Snorradóttir, Steinunn;
Magnúsdóttir, Droplaug N.;
Laffoon, Jason E.;
van Dorp, Lucy;
Liu, Xiaodong;
Moltke, Ida;
Avila-Arcos, María C.;
Schraiber, Joshua G.;
Rasmussen, Simon;
Juan, David;
Galabert, Pere;
de-Dios, Toni;
Fotakis, Anna K.;
Iraeta-Orbegozo, Miren;
Vågene, Åshild J.;
Denham, Sean Dexter;
Christophersen, Axel;
Stenøien, Hans K.;
Vieira, Filipe G.;
Liu, Shanlin;
Günther, Torsten;
Kivisild, Toomas;
Moseng, Ole Georg;
Skar, Birgitte;
Cheung, Christina;
Sandoval-Velasco, Marcela;
Wales, Nathan;
Schroeder, Hannes;
Campos, Paula F.;
Gudmundsdottir, Valdis B;
Sicheritz-Ponten, Thomas;
Petersen, Bent;
Halgunset, Jostein;
Gilbert, Edmund;
Cavalleri, Gianpiero L.;
Hovig, Eivind;
Kockum, Ingrid;
Olsson, Tomas;
Alfredsson, Lars;
Hansen, Thomas F.;
Werge, Thomas;
Willerslev, Eske;
Balloux, Francois;
Marquès-Bonet, Tomás;
Lalueza-Fox, Carles;
Nielsen, Rasmus;
Stefánsson, Kári;
Helgason, Agnar;
Gilbert, Marcus Thomas Pius.
(2022)
The population genomic legacy of the second plague pandemic.
Current Biology.
volum 32.
Academic article
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Malmstrom, Carolyn;
Martin, Michael David;
Gagnevin, Lionel.
(2022)
Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources.
Annual Review of Phytopathology.
volum 60.
Scientific translation/review
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Nygaard, Malene;
Kopatz, Alexander;
Speed, James David Mervyn;
Martin, Michael David;
Prestø, Tommy;
Kleven, Oddmund;
Bendiksby, Mika.
(2022)
Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens.
Ecology and Evolution.
volum 12 (8).
Academic article
2021
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Aguilar Tomasini, Maria Alejandra;
Martin, Michael David;
Speed, James David Mervyn.
(2021)
Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation.
Global Ecology and Conservation.
volum 31.
Academic article
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Foote, Andrew;
Gilbert, Marcus Thomas Pius;
Gopalakrishnan, Shyam;
Louis, Marie;
Martin, Michael David;
Morin, Phillip A.;
Nykänen, Milaja;
Scharff-Olsen, Camilla;
Excoffier, Laurent.
(2021)
Evidence of long-term purging of mutation load in killer whale genomes.
bioRxiv - the preprint server for biology.
Academic article
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Foote, Andrew;
Hooper, Rebecca;
Alexander, Alana;
Baird, Robin;
Baker, Charles Scott;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John;
Esteban, Ruth;
Excoffier, Laurent;
Martin, Sarah;
Forney, Karin A.;
Gerrodette, Tim;
Gilbert, Marcus Thomas Pius;
Guinet, Christophe;
Hanson, M. Bradley;
Li, Songhai;
Martin, Michael David;
Robertson, Kelly M.;
Samarra, Filipa I.P.;
de Stephanis, Renaud;
Tavares, Sara B.;
Tixier, Paul;
Totterdell, John A.;
Wade, Paul;
Wolf, Jochen B.W.;
Fan, Guangyi;
Zhang, Yaolei;
Morin, Phillip A..
(2021)
Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
Molecular Ecology.
volum 30 (23).
Academic article
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Hansen, Charles Christian Riis;
Baleka, Sina;
Gudjonsdottir, Solveig Magnea;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Hallgrimsson, Gunnar Thor;
Stefansson, Robert A.;
von Schmalensee, Menja;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2021)
Distinctive mitogenomic lineages within populations of white-tailed eagles (Haliaeetus albicilla).
Journal of Ornithology.
volum 139 (2).
Academic article
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Meleshko, Olena;
Martin, Michael David;
Korneliussen, Thorfinn Sand;
Schröck, Christian;
Lamkowski, Paul;
Schmutz, Jeremy;
Healey, Adam;
Piatkowski, Bryan T;
Shaw, A. Jonathan;
Weston, David J;
Flatberg, Kjell Ivar;
Szövényi, Péter;
Hassel, Kristian;
Stenøien, Hans K..
(2021)
Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus.
Molecular Biology and Evolution (MBE).
volum 38 (7).
Academic article
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Rasmussen, Jacob A.;
Villumsen, Kasper Rømer;
Duchêne, David;
Puetz, Lara;
Delmont, Tom;
Sveier, Harald;
von Gersdorff Jørgensen, Louise;
Præbel, Kim;
Martin, Michael David;
Bojesen, Anders Miki;
Gilbert, Marcus Thomas Pius;
Kristiansen, Karsten;
Limborg, Morten T..
(2021)
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts.
Communications Biology.
volum 4.
Academic article
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Rawlence, Nicolas J.;
Knapp, Michael;
Martin, Michael David;
Wales, Nathan.
(2021)
Applied Uses of Ancient DNA.
Frontiers in Ecology and Evolution.
volum 9.
Academic article
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Ristaino, Jean B.;
Anderson, Pamela;
Bebber, Daniel;
Brauman, Kate;
Cunniffe, Nik;
Fedoroff, Nina;
Finegold, Cambria;
Garrett, Karen A.;
Gilligan, Christopher;
Jones, Christopher M.;
Martin, Michael David;
MacDonald, Graham K.;
Neenan, Patricia;
Records, Angela;
Schmale, David G.;
Tateosian, Laura;
Wei, Qingshan.
(2021)
The persistent threat of emerging plant disease pandemics to global food security.
Proceedings of the National Academy of Sciences of the United States of America.
volum 118 (23).
Academic article
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Speed, James David Mervyn;
Chimal Ballesteros, Jesus Adrian;
Martin, Michael David;
Barrio, Isabel C.;
Vuorinen, Katariina Elsa Maria;
Soininen, Eeva Marjatta.
(2021)
Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?.
Global Change Biology.
volum 27 (24).
Academic article
2020
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Bakker, Freek T.;
Martin, Michael David;
Bieker, Vanessa Carina.
(2020)
Herbarium Collection-Based Plant Evolutionary Genetics and Genomics.
Frontiers in Ecology and Evolution.
volum 8.
Editorial
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Barnett, Ross;
Westbury, Michael V;
Sandoval-Velasco, Marcela;
Vieira, Filipe G.;
Jeon, Sungwon;
Zazula, Grant;
Martin, Michael David;
Ho, Simon Y.W.;
Mather, Niklas;
Gopalakrishnan, Shyam;
Ramos-Madrigal, Jazmín;
de Manuel, Marc;
Zepeda-Mendoza, Marie Lisandra;
Antunes, Agostinho;
Carmona Baez, Aldo;
De Cahsan, Binia;
Larson, Greger;
O'Brien, Stephen J.;
Eizirik, Eduardo;
Johnson, Warren E.;
Koepfli, Klaus-Peter;
Wilting, Andreas;
Fickel, Jörns;
Dalén, Love;
Lorenzen, Eline D.;
Marques-Bonet, Tomas;
Hansen, Anders J.;
Zhang, Guojie;
Bhak, Jong;
Yamaguchi, Nobuyuki;
Gilbert, Marcus Thomas Pius.
(2020)
Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens.
Current Biology.
volum 30 (24).
Academic article
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Bieker, Vanessa Carina;
Sánchez Barreiro, Fatima;
Rasmussen, Jacob Agerbo;
Brunier, Marie;
Wales, Nathan;
Martin, Michael David.
(2020)
Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community.
Molecular Ecology Resources.
volum 20.
Academic article
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de Manuel, Marc;
Barnett, Ross;
Sandoval-Velasco, Marcela;
Yamaguchi, Nobuyuki;
Vieira, Filipe G.;
Lisandra Zepeda Mendoza, Zepeda;
Liu, Shiping;
Martin, Michael David;
Sinding, Mikkel-Holger S.;
Mak, Sarah Siu Tze;
Carøe, Christian;
Liu, Shanlin;
Guo, Chunxue;
Zheng, Jiao;
Zazula, Grant;
Baryshnikov, Gennady;
Eizirik, Eduardo;
Koepfli, Klaus-Peter;
Johnson, Warren E.;
Antunes, Agostinho;
Sicheritz-Pontén, Thomas;
Gopalakrishnan, Shyam;
Larson, Greger;
Yang, Huanming;
O'Brien, Stephen J.;
Hansen, Anders J.;
Zhang, Guojie;
Marques-Bonet, Tomas;
Gilbert, Marcus Thomas Pius.
(2020)
The evolutionary history of extinct and living lions.
Proceedings of the National Academy of Sciences of the United States of America.
volum 117 (20).
Scientific translation/review
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Dehasque, Marianne;
Ávila-Arcos, María C;
Díez-del-Molino, David;
Fumagalli, Matteo;
Guschanski, Katerina;
Lorenzen, Eline D.;
Malaspinas, Anna-Sapfo;
Marques-Bonet, Tomas;
Martin, Michael David;
Murray, Gemma G.R.;
Papadopulos, Alexander;
Therkildsen, Nina Overgaard;
Wegmann, Daniel;
Dalén, Love;
Foote, Andrew.
(2020)
Inference of natural selection from ancient DNA.
Evolution Letters.
volum 4 (2).
Academic article
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Kistler, Logan;
Bieker, Vanessa Carina;
Martin, Michael David;
Pedersen, Mikkel Winther;
Madrigal, Jazmín Ramos;
Wales, Nathan.
(2020)
Ancient plant genomics in archaeology, herbaria, and the environment.
Annual Review of Plant Biology.
volum 71.
Academic article
2019
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Foote, Andrew D.;
Martin, Michael David;
Louis, Marie;
Pacheco, George;
Robertson, Kelly M.;
Sinding, Mikkel-Holger;
Amaral, Ana R.;
Baird, Robin;
Baker, Charles;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Dabin, Willy;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John W.;
Esteban, Ruth;
Ferguson, Steven H.;
Gerrodette, Tim;
Guinet, Christophe;
Hanson, M. Bradley;
Hoggard, Wayne;
Matthews, Cory J.D.;
Samarra, Filipa I.P.;
de Stephanis, Renaud;
Tavares, Sara B.;
Tixier, Paul;
Totterdell, John A.;
Wade, Paul;
Excoffier, Laurent;
Gilbert, Marcus Thomas Pius;
Wolf, Jochen B.W.;
Morin, Phillip A..
(2019)
Killer whale genomes reveal a complex history of recurrent admixture and vicariance.
Molecular Ecology.
volum 28 (14).
Academic article
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Maurice, Sundy Ursula Mary Jane;
Montes, Melanie;
Nielsen, Bent J.;
Bødker, Lars;
Martin, Michael David;
Jønck, Carina;
Kjøller, Rasmus;
Rosendahl, Søren.
(2019)
Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity.
Molecular plant pathology.
volum 20 (8).
Academic article
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Mienna, Ida Marielle;
Speed, James David Mervyn;
Bendiksby, Mika;
Thornhill, Andrew H.;
Mishler, Brent D.;
Martin, Michael David.
(2019)
Differential patterns of floristic phylogenetic diversity across a post-glacial landscape.
Journal of Biogeography.
volum 47.
Academic article
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Speed, James David Mervyn;
Skjelbred, Ina Åsnes;
Barrio, Isabel C.;
Martin, Michael David;
Berteaux, Dominique;
Bueno, C. Guillermo;
Christie, Katie S.;
Forbes, Bruce C.;
Forbey, Jennifer;
Fortin, Daniel;
Grytnes, John-Arvid;
Hoset, Katrine Skamfer;
Lecomte, Nicolas;
Marteinsdóttir, Bryndís;
Mosbacher, Jesper Bruun;
Pedersen, Åshild Ønvik;
Ravolainen, Virve;
Rees, Eileen C.;
Skarin, Anna;
Sokolova, Natalya;
Thornhill, Andrew H.;
Tombre, Ingunn;
Soininen, Eeva M.
(2019)
Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome.
Ecography.
volum 42 (6).
Academic article
-
Thomas, Jessica E.;
Carvalho, Gary R.;
Haile, James;
Rawlence, Nicolas J.;
Martin, Michael David;
Ho, Simon Y.W.;
Sigfússon, Arnór Þ.;
Jósefsson, Vigfús A.;
Frederiksen, Morten;
Linnebjerg, Jannie F.;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel-Holger S.;
Sandoval-Velasco, Marcela;
Soares, André E.R.;
Lacy, Robert;
Barilaro, Christina;
Best, Julia;
Brandis, Dirk;
Cavallo, Chiara;
Elorza, Mikelo;
Garrett, Kimball L;
Groot, Maaike;
Johansson, Friederike;
Lifjeld, Jan Terje;
Nilson, Göran;
Serjeanston, Dale;
Sweet, Paul;
Fuller, Errol;
Hufthammer, Anne Karin;
Meldgaard, Morten;
Fjeldså, Jon;
Shapiro, Beth;
Hofreiter, Michael;
Stewart, John R.;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2019)
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk.
eLIFE.
volum 8:e47509.
Academic article
2018
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Bieker, Vanessa Carina;
Martin, Michael David.
(2018)
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections.
Botany Letters.
volum 165 (3-4).
Academic article
-
Martin, Michael David;
Quiroz-Claros, Elva;
Brush, Grace S.;
Zimmer, Elizabeth A..
(2018)
Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae).
Molecular Phylogenetics and Evolution.
volum 120.
Academic article
-
O’Hanlon, Simon J;
Rieux, Adrien;
Farrer, Rhys A;
Rosa, Gonçalo M;
Waldman, Bruce;
Bataille, Arnaud;
Kosch, Tiffany A;
Murray, Kris A;
Brankovics, Balázs;
Fumagalli, Matteo;
Martin, Michael David;
Wales, Nathan;
Alvarado-Rybak, Mario;
Bates, Kieran A.;
Berger, Lee R.;
Böll, Susanne;
Brookes, Lola;
Clare, Frances;
Courtois, Elodie A.;
Cunningham, Andrew A;
Doherty-Bone, Thomas M.;
Ghosh, Pria;
Gower, David J.;
Hintz, William E.;
Höglund, Jacob;
Jenkinson, Thomas S.;
Lin, Chun-Fu;
Laurila, Anssi;
Loyau, Adeline;
Martel, An;
Meurling, Sara;
Miaud, Claude;
Minting, Pete;
Pasmans, Frank;
Schmeller, Dirk S.;
Schmidt, Benedikt R.;
Shelton, Jennifer M.G.;
Skerratt, Lee F.;
Smith, Freya;
Soto-Azat, Claudio;
Spagnoletti, Matteo;
Tessa, Giulia;
Toledo, Luís Felipe;
Valenzuela-Sánchez, Andrés;
Verster, Ruhan;
Vörös, Judit;
Webb, Rebecca J.;
Wierzbicki, Claudia;
Wombwell, Emma;
Fisher, Matthew C.;
Aanensen, David M;
James, Timothy Y;
Thomas P Gilbert, M;
Weldon, Che;
Bosch, Jaime;
Balloux, Francois;
Garner, Trenton W J;
Fisher, Matthew C.
(2018)
Recent Asian origin of chytrid fungi causing global amphibian declines.
Science.
volum 360.
Academic article
2017
-
Grube, Martin;
Gaya, Ester;
Kauserud, Håvard;
Smith, Adrian M.;
Avery, Simon V.;
Fernstad, Sara F.;
Muggia, Lucia;
Martin, Michael David;
Eivindsen, Tove;
Kõljalg, Urmas;
Bendiksby, Mika.
(2017)
The next generation fungal diversity researcher.
Fungal Biology Reviews.
volum 31 (3).
Scientific translation/review
-
Martin, Michael David;
Jay, Flora;
Castellano, Sergi;
Slatkin, Montgomery.
(2017)
Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations.
Molecular Ecology.
volum 26 (16).
Academic article
-
Sánchez Barreiro, Fatima;
Vieira, Filipe G.;
Martin, Michael D.;
Haile, James;
Gilbert, Marcus Thomas Pius;
Wales, Nathan.
(2017)
Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.
Molecular Ecology Resources.
volum 17 (2).
Academic article
-
Thomas, Jessica E;
Carvalho, Gary R.;
Haile, James;
Martin, Michael David;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel Holger Strander;
Sandoval-Velasco, Marcela;
Rawlence, Nicolas J.;
Fuller, Errol;
Fjeldså, Jon;
Hofreiter, Michael;
Stewart, John R;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2017)
An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks.
Genes.
volum 8 (6).
Academic article
2016
-
Foote, Andy;
Vijay, Nagarjun;
Avila-Arcos, Maria;
Baird, Robin;
Durban, John;
Morin, Phillip;
Fumagalli, Matteo;
Gibbs, Richard;
Hanson, Bradley;
Korneliussen, Thorfinn;
Martin, Michael D.;
Robertson, Kelly;
Sousa, Vitor;
Vieira, Filipe G.;
Vinar, Tomas;
Wade, Paul;
Worley, Kim;
Excoffier, Laurent;
Gilbert, M Thomas P;
Wolf, Jochen B W.
(2016)
Genome-culture coevolution drives rapid divergence in the killer whale.
Nature Communications.
volum 7.
Academic article
-
Martin, Michael D;
Olsen, Morten T;
Samaniego, Jose;
Zimmer, Elizabeth A;
Gilbert, Marcus Thomas Pius.
(2016)
The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).
Ecology and Evolution.
volum 6 (11).
Academic article
-
Martin, Michael D;
Vieira, Filipe G;
Ho, Simon Y W;
Wales, Nathan;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2016)
Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans.
Molecular Biology and Evolution (MBE).
volum 33.
Academic article
-
Saville, Amanda;
Martin, Michael David;
Ristaino, Jean B..
(2016)
Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary.
PLOS ONE.
volum 11:e0168381 (12).
Scientific translation/review
2015
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Der Sarkissian, Clio;
Allentoft, M;
Campos, Paula F;
Cappellini, Enrico;
Ermini, Luca;
Fernandez, Ruth;
Hansen, Anders J;
Korneliussen, Thorfinn;
Margaryan, Ashot;
Martin, Michael D;
Moreno-Mayar, J V;
Raghavan, Maanasa;
Rasmussen, Morten;
Velasco, Marcela Sandoval;
Schroeder, Hannes;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Wales, Nathan;
Gilbert, M Thomas P;
Willerslev, Eske;
Orlando, Ludovic.
(2015)
Ancient genomics.
Philosophical Transactions of the Royal Society of London. Biological Sciences.
volum 370.
Scientific translation/review
2014
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Martin, Michael D;
Ho, Simon Y W;
Wales, Nathan;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2014)
Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World.
Molecular Biology and Evolution (MBE).
volum 31.
Academic article
-
Martin, Michael D;
Zimmer, Elizabeth A;
Olsen, Morten T;
Foote, Andrew D;
Gilbert, M Thomas P;
Brush, Grace S.
(2014)
Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance.
Molecular Ecology.
volum 23.
Academic article
-
Schubert, Mikkel;
Ermini, Luca;
Der Sarkissian, Clio;
Jónsson, Hákon;
Ginolhac, Aurélien;
Schaefer, Robert;
Fernández, Ruth;
Martin, Michael D;
Kircher, Martin;
McCue, Molly E;
Willerslev, Eske;
Orlando, Ludovic.
(2014)
Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses.
Nature Protocols.
volum 9.
Academic article
-
Zhang, Guojie;
Martin, Michael D;
et al., -.
(2014)
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
volum 346 (6215).
Academic article
2013
-
Martin, Michael D;
Cappellini, Enrico;
Samaniego, Jose;
Zepeda, M. Lisandra;
Campos, Paula F;
Seguin-Orlando, Andaine;
Wales, Nathan;
Orlando, Ludovic;
Ho, Simon Y W;
Dietrich, Fred S;
Mieczkowski, Piotr A;
Heitman, Joseph;
Willerslev, Eske;
Krogh, Anders;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2013)
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.
Nature Communications.
volum 4.
Academic article
2010
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Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace.
(2010)
Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal.
Agricultural and Forest Meteorology.
volum 150.
Academic article
2009
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Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace;
Meneveau, Charles;
Parlange, Marc.
(2009)
Pollen clumping and wind dispersal in an invasive angiosperm.
American Journal of Botany.
volum 96.
Academic article
Scientific articles
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Bieker, Vanessa Carina;
Battlay, Paul;
Petersen, Bent;
Sun, Xin;
Wilson, Jonathan;
Brealey, Jaelle C.;
Bretagnolle, François;
Nurkowski, Kristin;
Lee, Chris;
Sánchez Barreiro, Fatima;
Owens, Gregory;
Lee, Jacqueline;
Kellner, Fabian Laszlo;
van Boheeman, Lotte;
Gopalakrishnan, Shyam;
Gaudeul, Myriam;
Mueller-Schaerer, Heinz;
Lommen, Suzanne;
Karrer, Gerhard;
Chauvel, Bruno;
Sun, Yan;
Konstantinovic, Bojan;
Dalén, Love;
Poczai, Péter;
Rieseberg, Loren H.;
Gilbert, Marcus Thomas Pius;
Hodgins, Kathryn A.;
Martin, Michael David.
(2022)
Uncovering the genomic basis of an extraordinary plant invasion.
Science Advances.
volum 8 (34).
Academic article
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Brealey, Jaelle;
Lecaudey, Laurene Alicia;
Kodama, Miyako;
Rasmussen, Jacob A.;
Sveier, Harald;
Dheilly, Nolwenn M.;
Martin, Michael David;
Limborg, Morten Tønsberg.
(2022)
Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host.
mBio.
volum 13 (3).
Academic article
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Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel;
Li, Siyu;
Li, Qionghou;
Loureiro, João;
Kosawang, Chatchai;
Jaramillo Díaz, Patricia;
Rivas-Torres, Gonzalo;
Fernández-Mazuecos, Mario;
Vargas, Pablo;
McCauley, Ross;
Petersen, Gitte;
Santos-Bay, Luisa;
Wales, Nathan;
Catchen, Julian M.;
Machado, Daniel;
Nowak, Michael;
Suh, Alexander;
Sinha, Neelima R.;
Rostgaard Nielsen, Lene;
Seberg, Ole;
Gilbert, Marcus Thomas Pius;
Leebens-Mack, James H.;
Rieseberg, Loren H.;
Martin, Michael David.
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications.
volum 13.
Academic article
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Gopalakrishnan, Shyam;
Ebenesersdottir, S.Sunna;
Lundstrøm, Inge K.C.;
Turner-Walker, Gordon;
Moore, Kristjan H.S.;
Luisi, Pierre;
Magaryan, Ashot;
Martin, Michael David;
Ellegaard, Martin Rene;
Magnusson, Olafur T.;
Sigurdsson, Asgeir;
Snorradóttir, Steinunn;
Magnúsdóttir, Droplaug N.;
Laffoon, Jason E.;
van Dorp, Lucy;
Liu, Xiaodong;
Moltke, Ida;
Avila-Arcos, María C.;
Schraiber, Joshua G.;
Rasmussen, Simon;
Juan, David;
Galabert, Pere;
de-Dios, Toni;
Fotakis, Anna K.;
Iraeta-Orbegozo, Miren;
Vågene, Åshild J.;
Denham, Sean Dexter;
Christophersen, Axel;
Stenøien, Hans K.;
Vieira, Filipe G.;
Liu, Shanlin;
Günther, Torsten;
Kivisild, Toomas;
Moseng, Ole Georg;
Skar, Birgitte;
Cheung, Christina;
Sandoval-Velasco, Marcela;
Wales, Nathan;
Schroeder, Hannes;
Campos, Paula F.;
Gudmundsdottir, Valdis B;
Sicheritz-Ponten, Thomas;
Petersen, Bent;
Halgunset, Jostein;
Gilbert, Edmund;
Cavalleri, Gianpiero L.;
Hovig, Eivind;
Kockum, Ingrid;
Olsson, Tomas;
Alfredsson, Lars;
Hansen, Thomas F.;
Werge, Thomas;
Willerslev, Eske;
Balloux, Francois;
Marquès-Bonet, Tomás;
Lalueza-Fox, Carles;
Nielsen, Rasmus;
Stefánsson, Kári;
Helgason, Agnar;
Gilbert, Marcus Thomas Pius.
(2022)
The population genomic legacy of the second plague pandemic.
Current Biology.
volum 32.
Academic article
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Nygaard, Malene;
Kopatz, Alexander;
Speed, James David Mervyn;
Martin, Michael David;
Prestø, Tommy;
Kleven, Oddmund;
Bendiksby, Mika.
(2022)
Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens.
Ecology and Evolution.
volum 12 (8).
Academic article
-
Aguilar Tomasini, Maria Alejandra;
Martin, Michael David;
Speed, James David Mervyn.
(2021)
Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation.
Global Ecology and Conservation.
volum 31.
Academic article
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Foote, Andrew;
Gilbert, Marcus Thomas Pius;
Gopalakrishnan, Shyam;
Louis, Marie;
Martin, Michael David;
Morin, Phillip A.;
Nykänen, Milaja;
Scharff-Olsen, Camilla;
Excoffier, Laurent.
(2021)
Evidence of long-term purging of mutation load in killer whale genomes.
bioRxiv - the preprint server for biology.
Academic article
-
Foote, Andrew;
Hooper, Rebecca;
Alexander, Alana;
Baird, Robin;
Baker, Charles Scott;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John;
Esteban, Ruth;
Excoffier, Laurent;
Martin, Sarah;
Forney, Karin A.;
Gerrodette, Tim;
Gilbert, Marcus Thomas Pius;
Guinet, Christophe;
Hanson, M. Bradley;
Li, Songhai;
Martin, Michael David;
Robertson, Kelly M.;
Samarra, Filipa I.P.;
de Stephanis, Renaud;
Tavares, Sara B.;
Tixier, Paul;
Totterdell, John A.;
Wade, Paul;
Wolf, Jochen B.W.;
Fan, Guangyi;
Zhang, Yaolei;
Morin, Phillip A..
(2021)
Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
Molecular Ecology.
volum 30 (23).
Academic article
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Hansen, Charles Christian Riis;
Baleka, Sina;
Gudjonsdottir, Solveig Magnea;
Rasmussen, Jacob Agerbo;
Chimal Ballesteros, Jesus Adrian;
Hallgrimsson, Gunnar Thor;
Stefansson, Robert A.;
von Schmalensee, Menja;
Skarphédinsson, Kristinn Haukur;
Labansen, Aili Lage;
Leivits, Madis;
Skelmose, Kim;
Sonne, Christian;
Dietz, Rune;
Boertmann, David;
Eulaers, Igor;
Martin, Michael David;
Pálsson, Snæbjörn.
(2021)
Distinctive mitogenomic lineages within populations of white-tailed eagles (Haliaeetus albicilla).
Journal of Ornithology.
volum 139 (2).
Academic article
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Meleshko, Olena;
Martin, Michael David;
Korneliussen, Thorfinn Sand;
Schröck, Christian;
Lamkowski, Paul;
Schmutz, Jeremy;
Healey, Adam;
Piatkowski, Bryan T;
Shaw, A. Jonathan;
Weston, David J;
Flatberg, Kjell Ivar;
Szövényi, Péter;
Hassel, Kristian;
Stenøien, Hans K..
(2021)
Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus.
Molecular Biology and Evolution (MBE).
volum 38 (7).
Academic article
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Rasmussen, Jacob A.;
Villumsen, Kasper Rømer;
Duchêne, David;
Puetz, Lara;
Delmont, Tom;
Sveier, Harald;
von Gersdorff Jørgensen, Louise;
Præbel, Kim;
Martin, Michael David;
Bojesen, Anders Miki;
Gilbert, Marcus Thomas Pius;
Kristiansen, Karsten;
Limborg, Morten T..
(2021)
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts.
Communications Biology.
volum 4.
Academic article
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Rawlence, Nicolas J.;
Knapp, Michael;
Martin, Michael David;
Wales, Nathan.
(2021)
Applied Uses of Ancient DNA.
Frontiers in Ecology and Evolution.
volum 9.
Academic article
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Ristaino, Jean B.;
Anderson, Pamela;
Bebber, Daniel;
Brauman, Kate;
Cunniffe, Nik;
Fedoroff, Nina;
Finegold, Cambria;
Garrett, Karen A.;
Gilligan, Christopher;
Jones, Christopher M.;
Martin, Michael David;
MacDonald, Graham K.;
Neenan, Patricia;
Records, Angela;
Schmale, David G.;
Tateosian, Laura;
Wei, Qingshan.
(2021)
The persistent threat of emerging plant disease pandemics to global food security.
Proceedings of the National Academy of Sciences of the United States of America.
volum 118 (23).
Academic article
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Speed, James David Mervyn;
Chimal Ballesteros, Jesus Adrian;
Martin, Michael David;
Barrio, Isabel C.;
Vuorinen, Katariina Elsa Maria;
Soininen, Eeva Marjatta.
(2021)
Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?.
Global Change Biology.
volum 27 (24).
Academic article
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Barnett, Ross;
Westbury, Michael V;
Sandoval-Velasco, Marcela;
Vieira, Filipe G.;
Jeon, Sungwon;
Zazula, Grant;
Martin, Michael David;
Ho, Simon Y.W.;
Mather, Niklas;
Gopalakrishnan, Shyam;
Ramos-Madrigal, Jazmín;
de Manuel, Marc;
Zepeda-Mendoza, Marie Lisandra;
Antunes, Agostinho;
Carmona Baez, Aldo;
De Cahsan, Binia;
Larson, Greger;
O'Brien, Stephen J.;
Eizirik, Eduardo;
Johnson, Warren E.;
Koepfli, Klaus-Peter;
Wilting, Andreas;
Fickel, Jörns;
Dalén, Love;
Lorenzen, Eline D.;
Marques-Bonet, Tomas;
Hansen, Anders J.;
Zhang, Guojie;
Bhak, Jong;
Yamaguchi, Nobuyuki;
Gilbert, Marcus Thomas Pius.
(2020)
Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens.
Current Biology.
volum 30 (24).
Academic article
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Bieker, Vanessa Carina;
Sánchez Barreiro, Fatima;
Rasmussen, Jacob Agerbo;
Brunier, Marie;
Wales, Nathan;
Martin, Michael David.
(2020)
Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community.
Molecular Ecology Resources.
volum 20.
Academic article
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Dehasque, Marianne;
Ávila-Arcos, María C;
Díez-del-Molino, David;
Fumagalli, Matteo;
Guschanski, Katerina;
Lorenzen, Eline D.;
Malaspinas, Anna-Sapfo;
Marques-Bonet, Tomas;
Martin, Michael David;
Murray, Gemma G.R.;
Papadopulos, Alexander;
Therkildsen, Nina Overgaard;
Wegmann, Daniel;
Dalén, Love;
Foote, Andrew.
(2020)
Inference of natural selection from ancient DNA.
Evolution Letters.
volum 4 (2).
Academic article
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Kistler, Logan;
Bieker, Vanessa Carina;
Martin, Michael David;
Pedersen, Mikkel Winther;
Madrigal, Jazmín Ramos;
Wales, Nathan.
(2020)
Ancient plant genomics in archaeology, herbaria, and the environment.
Annual Review of Plant Biology.
volum 71.
Academic article
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Foote, Andrew D.;
Martin, Michael David;
Louis, Marie;
Pacheco, George;
Robertson, Kelly M.;
Sinding, Mikkel-Holger;
Amaral, Ana R.;
Baird, Robin;
Baker, Charles;
Ballance, Lisa;
Barlow, Jay;
Brownlow, Andrew;
Collins, Tim;
Constantine, Rochelle;
Dabin, Willy;
Rosa, Luciano Dalla;
Davison, Nicholas J.;
Durban, John W.;
Esteban, Ruth;
Ferguson, Steven H.;
Gerrodette, Tim;
Guinet, Christophe;
Hanson, M. Bradley;
Hoggard, Wayne;
Matthews, Cory J.D.;
Samarra, Filipa I.P.;
de Stephanis, Renaud;
Tavares, Sara B.;
Tixier, Paul;
Totterdell, John A.;
Wade, Paul;
Excoffier, Laurent;
Gilbert, Marcus Thomas Pius;
Wolf, Jochen B.W.;
Morin, Phillip A..
(2019)
Killer whale genomes reveal a complex history of recurrent admixture and vicariance.
Molecular Ecology.
volum 28 (14).
Academic article
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Maurice, Sundy Ursula Mary Jane;
Montes, Melanie;
Nielsen, Bent J.;
Bødker, Lars;
Martin, Michael David;
Jønck, Carina;
Kjøller, Rasmus;
Rosendahl, Søren.
(2019)
Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity.
Molecular plant pathology.
volum 20 (8).
Academic article
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Mienna, Ida Marielle;
Speed, James David Mervyn;
Bendiksby, Mika;
Thornhill, Andrew H.;
Mishler, Brent D.;
Martin, Michael David.
(2019)
Differential patterns of floristic phylogenetic diversity across a post-glacial landscape.
Journal of Biogeography.
volum 47.
Academic article
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Speed, James David Mervyn;
Skjelbred, Ina Åsnes;
Barrio, Isabel C.;
Martin, Michael David;
Berteaux, Dominique;
Bueno, C. Guillermo;
Christie, Katie S.;
Forbes, Bruce C.;
Forbey, Jennifer;
Fortin, Daniel;
Grytnes, John-Arvid;
Hoset, Katrine Skamfer;
Lecomte, Nicolas;
Marteinsdóttir, Bryndís;
Mosbacher, Jesper Bruun;
Pedersen, Åshild Ønvik;
Ravolainen, Virve;
Rees, Eileen C.;
Skarin, Anna;
Sokolova, Natalya;
Thornhill, Andrew H.;
Tombre, Ingunn;
Soininen, Eeva M.
(2019)
Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome.
Ecography.
volum 42 (6).
Academic article
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Thomas, Jessica E.;
Carvalho, Gary R.;
Haile, James;
Rawlence, Nicolas J.;
Martin, Michael David;
Ho, Simon Y.W.;
Sigfússon, Arnór Þ.;
Jósefsson, Vigfús A.;
Frederiksen, Morten;
Linnebjerg, Jannie F.;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel-Holger S.;
Sandoval-Velasco, Marcela;
Soares, André E.R.;
Lacy, Robert;
Barilaro, Christina;
Best, Julia;
Brandis, Dirk;
Cavallo, Chiara;
Elorza, Mikelo;
Garrett, Kimball L;
Groot, Maaike;
Johansson, Friederike;
Lifjeld, Jan Terje;
Nilson, Göran;
Serjeanston, Dale;
Sweet, Paul;
Fuller, Errol;
Hufthammer, Anne Karin;
Meldgaard, Morten;
Fjeldså, Jon;
Shapiro, Beth;
Hofreiter, Michael;
Stewart, John R.;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2019)
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk.
eLIFE.
volum 8:e47509.
Academic article
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Bieker, Vanessa Carina;
Martin, Michael David.
(2018)
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections.
Botany Letters.
volum 165 (3-4).
Academic article
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Martin, Michael David;
Quiroz-Claros, Elva;
Brush, Grace S.;
Zimmer, Elizabeth A..
(2018)
Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae).
Molecular Phylogenetics and Evolution.
volum 120.
Academic article
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O’Hanlon, Simon J;
Rieux, Adrien;
Farrer, Rhys A;
Rosa, Gonçalo M;
Waldman, Bruce;
Bataille, Arnaud;
Kosch, Tiffany A;
Murray, Kris A;
Brankovics, Balázs;
Fumagalli, Matteo;
Martin, Michael David;
Wales, Nathan;
Alvarado-Rybak, Mario;
Bates, Kieran A.;
Berger, Lee R.;
Böll, Susanne;
Brookes, Lola;
Clare, Frances;
Courtois, Elodie A.;
Cunningham, Andrew A;
Doherty-Bone, Thomas M.;
Ghosh, Pria;
Gower, David J.;
Hintz, William E.;
Höglund, Jacob;
Jenkinson, Thomas S.;
Lin, Chun-Fu;
Laurila, Anssi;
Loyau, Adeline;
Martel, An;
Meurling, Sara;
Miaud, Claude;
Minting, Pete;
Pasmans, Frank;
Schmeller, Dirk S.;
Schmidt, Benedikt R.;
Shelton, Jennifer M.G.;
Skerratt, Lee F.;
Smith, Freya;
Soto-Azat, Claudio;
Spagnoletti, Matteo;
Tessa, Giulia;
Toledo, Luís Felipe;
Valenzuela-Sánchez, Andrés;
Verster, Ruhan;
Vörös, Judit;
Webb, Rebecca J.;
Wierzbicki, Claudia;
Wombwell, Emma;
Fisher, Matthew C.;
Aanensen, David M;
James, Timothy Y;
Thomas P Gilbert, M;
Weldon, Che;
Bosch, Jaime;
Balloux, Francois;
Garner, Trenton W J;
Fisher, Matthew C.
(2018)
Recent Asian origin of chytrid fungi causing global amphibian declines.
Science.
volum 360.
Academic article
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Martin, Michael David;
Jay, Flora;
Castellano, Sergi;
Slatkin, Montgomery.
(2017)
Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations.
Molecular Ecology.
volum 26 (16).
Academic article
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Sánchez Barreiro, Fatima;
Vieira, Filipe G.;
Martin, Michael D.;
Haile, James;
Gilbert, Marcus Thomas Pius;
Wales, Nathan.
(2017)
Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.
Molecular Ecology Resources.
volum 17 (2).
Academic article
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Thomas, Jessica E;
Carvalho, Gary R.;
Haile, James;
Martin, Michael David;
Castruita, Jose A. Samaniego;
Niemann, Jonas;
Sinding, Mikkel Holger Strander;
Sandoval-Velasco, Marcela;
Rawlence, Nicolas J.;
Fuller, Errol;
Fjeldså, Jon;
Hofreiter, Michael;
Stewart, John R;
Gilbert, Marcus Thomas Pius;
Knapp, Michael.
(2017)
An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks.
Genes.
volum 8 (6).
Academic article
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Foote, Andy;
Vijay, Nagarjun;
Avila-Arcos, Maria;
Baird, Robin;
Durban, John;
Morin, Phillip;
Fumagalli, Matteo;
Gibbs, Richard;
Hanson, Bradley;
Korneliussen, Thorfinn;
Martin, Michael D.;
Robertson, Kelly;
Sousa, Vitor;
Vieira, Filipe G.;
Vinar, Tomas;
Wade, Paul;
Worley, Kim;
Excoffier, Laurent;
Gilbert, M Thomas P;
Wolf, Jochen B W.
(2016)
Genome-culture coevolution drives rapid divergence in the killer whale.
Nature Communications.
volum 7.
Academic article
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Martin, Michael D;
Olsen, Morten T;
Samaniego, Jose;
Zimmer, Elizabeth A;
Gilbert, Marcus Thomas Pius.
(2016)
The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).
Ecology and Evolution.
volum 6 (11).
Academic article
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Martin, Michael D;
Vieira, Filipe G;
Ho, Simon Y W;
Wales, Nathan;
Schubert, Mikkel;
Seguin-Orlando, Andaine;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2016)
Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans.
Molecular Biology and Evolution (MBE).
volum 33.
Academic article
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Martin, Michael D;
Ho, Simon Y W;
Wales, Nathan;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2014)
Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World.
Molecular Biology and Evolution (MBE).
volum 31.
Academic article
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Martin, Michael D;
Zimmer, Elizabeth A;
Olsen, Morten T;
Foote, Andrew D;
Gilbert, M Thomas P;
Brush, Grace S.
(2014)
Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance.
Molecular Ecology.
volum 23.
Academic article
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Schubert, Mikkel;
Ermini, Luca;
Der Sarkissian, Clio;
Jónsson, Hákon;
Ginolhac, Aurélien;
Schaefer, Robert;
Fernández, Ruth;
Martin, Michael D;
Kircher, Martin;
McCue, Molly E;
Willerslev, Eske;
Orlando, Ludovic.
(2014)
Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses.
Nature Protocols.
volum 9.
Academic article
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Zhang, Guojie;
Martin, Michael D;
et al., -.
(2014)
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
volum 346 (6215).
Academic article
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Martin, Michael D;
Cappellini, Enrico;
Samaniego, Jose;
Zepeda, M. Lisandra;
Campos, Paula F;
Seguin-Orlando, Andaine;
Wales, Nathan;
Orlando, Ludovic;
Ho, Simon Y W;
Dietrich, Fred S;
Mieczkowski, Piotr A;
Heitman, Joseph;
Willerslev, Eske;
Krogh, Anders;
Ristaino, Jean B;
Gilbert, M Thomas P.
(2013)
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.
Nature Communications.
volum 4.
Academic article
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Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace.
(2010)
Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal.
Agricultural and Forest Meteorology.
volum 150.
Academic article
-
Martin, Michael D;
Chamecki, Marcelo;
Brush, Grace;
Meneveau, Charles;
Parlange, Marc.
(2009)
Pollen clumping and wind dispersal in an invasive angiosperm.
American Journal of Botany.
volum 96.
Academic article
Journal publications
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Malmstrom, Carolyn;
Martin, Michael David;
Gagnevin, Lionel.
(2022)
Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources.
Annual Review of Phytopathology.
volum 60.
Scientific translation/review
-
Bakker, Freek T.;
Martin, Michael David;
Bieker, Vanessa Carina.
(2020)
Herbarium Collection-Based Plant Evolutionary Genetics and Genomics.
Frontiers in Ecology and Evolution.
volum 8.
Editorial
-
de Manuel, Marc;
Barnett, Ross;
Sandoval-Velasco, Marcela;
Yamaguchi, Nobuyuki;
Vieira, Filipe G.;
Lisandra Zepeda Mendoza, Zepeda;
Liu, Shiping;
Martin, Michael David;
Sinding, Mikkel-Holger S.;
Mak, Sarah Siu Tze;
Carøe, Christian;
Liu, Shanlin;
Guo, Chunxue;
Zheng, Jiao;
Zazula, Grant;
Baryshnikov, Gennady;
Eizirik, Eduardo;
Koepfli, Klaus-Peter;
Johnson, Warren E.;
Antunes, Agostinho;
Sicheritz-Pontén, Thomas;
Gopalakrishnan, Shyam;
Larson, Greger;
Yang, Huanming;
O'Brien, Stephen J.;
Hansen, Anders J.;
Zhang, Guojie;
Marques-Bonet, Tomas;
Gilbert, Marcus Thomas Pius.
(2020)
The evolutionary history of extinct and living lions.
Proceedings of the National Academy of Sciences of the United States of America.
volum 117 (20).
Scientific translation/review
-
Grube, Martin;
Gaya, Ester;
Kauserud, Håvard;
Smith, Adrian M.;
Avery, Simon V.;
Fernstad, Sara F.;
Muggia, Lucia;
Martin, Michael David;
Eivindsen, Tove;
Kõljalg, Urmas;
Bendiksby, Mika.
(2017)
The next generation fungal diversity researcher.
Fungal Biology Reviews.
volum 31 (3).
Scientific translation/review
-
Saville, Amanda;
Martin, Michael David;
Ristaino, Jean B..
(2016)
Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary.
PLOS ONE.
volum 11:e0168381 (12).
Scientific translation/review
-
Der Sarkissian, Clio;
Allentoft, M;
Campos, Paula F;
Cappellini, Enrico;
Ermini, Luca;
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Scientific translation/review