2023

• Battlay, Paul; Wilson, Jonathan; Bieker, Vanessa Carina; Lee, Christopher; Prapas, Diana; Petersen, Bent; Craig, Sam; van Boheemen, Lotte; Scalone, Romain; de Silva, Nissanka; Sharma, Amit; Konstantinovic, Bojan; Nurkowski, Kristin; Rieseberg, Loren H.; Connallon, Tim; Martin, Michael David; Hodgins, Kathryn A.. (2023) Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia. Nature Communications. volum 14 (1).
  Academic article
• Brandslet, Steinar; Martin, Michael David; Bieker, Vanessa Carina. (2023) Supergenes helped bring alien plant to Norway. Gemini (English edition).
  Popular scientific article
• Cerca Monteiro De Oliveira, José Pedro; Cotoras, Darko; Bieker, Vanessa Carina; De-Kayne, Rishi; Vargas, Pablo; Fernández-Mazuecos, Mario; López-Delgado, Julia; White, Oliver; Stervander, Martin; Geneva, Anthony J.; Andino, Juan E. Guevara; Meier, Joana Isabel; Roeble, Lizzie; Brée, Baptiste; Patiño, Jairo; Guayasamin, Juan M.; de Lourdes Torres, María; Valdebenito, Hugo; Castañeda, María del Rosario. (2023) Evolutionary genomics of oceanic island radiations. Trends in Ecology & Evolution.
  Academic literature review
• Hansen, Charles Christian Riis; Láruson, Áki Jarl; Rasmussen, Jacob Agerbo; Chimal Ballesteros, Jesus Adrian; Sinding, Mikkel Holger Strander; Hallgrimsson, Gunnar T.; von Schmalensee, Menja; Stefansson, Robert A.; Skarphédinsson, Kristinn Haukur; Labansen, Aili Lage; Leivits, Madis; Sonne, Christian; Dietz, Rune; Skelmose, Kim; Boertmann, David; Eulaers, Igor; Martin, Michael David; Helgason, Agnar S.; Gilbert, Marcus Thomas Pius. (2023) Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla). Molecular Ecology. volum 32.
  Academic article
• Zhang, Pei; Zhu, Yuanzhen; Guo, Qunfei; Li, Ji; Zhan, Xiaoyu; Yu, Hao; Xie, Nianxia; Tan, Huishuang; Lundholm, Nina; Garcia-Cuetos, Lydia; Martin, Michael David; Antó Subirats, Meritxell; Su, Yi-Hsien; Ruiz-Trillo, Iñaki; Martindale, Mark Q.; Yu, Jr-Kai; Gilbert, M. Thomas P.; Zhang, Guojie; Li, Qiye. (2023) On the origin and evolution of RNA editing in metazoans. Cell reports. volum 42 (2).
  Academic article

2022

• Bieker, Vanessa Carina; Battlay, Paul; Petersen, Bent; Sun, Xin; Wilson, Jonathan; Brealey, Jaelle C.; Bretagnolle, François; Nurkowski, Kristin; Lee, Chris; Sánchez Barreiro, Fatima; Owens, Gregory; Lee, Jacqueline; Kellner, Fabian Laszlo; van Boheeman, Lotte; Gopalakrishnan, Shyam; Gaudeul, Myriam; Mueller-Schaerer, Heinz; Lommen, Suzanne; Karrer, Gerhard. (2022) Uncovering the genomic basis of an extraordinary plant invasion. Science Advances. volum 8 (34).
  Academic article
• Brandslet, Steinar; Cerca Monteiro De Oliveira, José Pedro; Martin, Michael David. (2022) Darwin’s giant daises and evolution. Gemini (English edition).
  Popular scientific article
• Brealey, Jaelle; Lecaudey, Laurene Alicia; Kodama, Miyako; Rasmussen, Jacob A.; Sveier, Harald; Dheilly, Nolwenn M.; Martin, Michael David; Limborg, Morten Tønsberg. (2022) Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host. mBio. volum 13 (3).
  Academic article
• Cerca, José; Petersen, Bent; Lazaro-Guevara, José Miguel; Rivera-Colón, Angel G.; Birkeland, Siri; Vizueta, Joel; Li, Siyu; Li, Qionghou; Loureiro, João; Kosawang, Chatchai; Jaramillo Díaz, Patricia; Rivas-Torres, Gonzalo; Fernández-Mazuecos, Mario; Vargas, Pablo; McCauley, Ross; Petersen, Gitte; Santos-Bay, Luisa; Wales, Nathan; Catchen, Julian M.. (2022) The genomic basis of the plant island syndrome in Darwin’s giant daisies. Nature Communications. volum 13.
  Academic article
• Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre; Magaryan, Ashot; Martin, Michael David; Ellegaard, Martin Rene; Magnusson, Olafur T.; Sigurdsson, Asgeir; Snorradóttir, Steinunn; Magnúsdóttir, Droplaug N.; Laffoon, Jason E.; van Dorp, Lucy; Liu, Xiaodong; Moltke, Ida; Avila-Arcos, María C.; Schraiber, Joshua G.. (2022) The population genomic legacy of the second plague pandemic. Current Biology. volum 32.
  Academic article
• Hansen, Charles Christian Riis; Baleka, Sina; Magnea Guðjónsdóttir, Sólveig; Agerbo Rasmussen, Jacob; Chimal Ballesteros, Jesus Adrian; Thor Hallgrimsson, Gunnar; Stefansson, Robert A.; Von Schmalensee, Menja; Haukur Skarphedinsson, Kristinn; Lage Labansen, Aili; Leivits, Madis; Skelmose, Kim; Sonne, Christian; Dietz, Rune; Boertmann, David; Eulaers, Igor; Martin, Michael David; Pálsson, Snæbjörn. (2022) Erratum to: Distinctive mitogenomic lineages within populations of White-tailed Eagles(Ornithology DOI: 10.1093/ornithology/ukab081). The AUK: A Quarterly Journal of Ornithology. volum 139 (3).
  Errata
• Malmstrom, Carolyn; Martin, Michael David; Gagnevin, Lionel. (2022) Exploring the Emergence and Evolution of Plant Pathogenic Microbes Using Historical and Paleontological Sources. Annual Review of Phytopathology. volum 60.
  Academic literature review
• Nygaard, Malene; Kopatz, Alexander; Speed, James David Mervyn; Martin, Michael David; Prestø, Tommy; Kleven, Oddmund; Bendiksby, Mika. (2022) Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) — SNP genotyping and environmental niche modeling herbarium specimens. Ecology and Evolution. volum 12 (8).
  Academic article

2021

• Aguilar Tomasini, Maria Alejandra; Martin, Michael David; Speed, James David Mervyn. (2021) Assessing spatial patterns of phylogenetic diversity of Mexican mammals for biodiversity conservation. Global Ecology and Conservation. volum 31.
  Academic article
• Foote, Andrew; Gilbert, Marcus Thomas Pius; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael David; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla; Excoffier, Laurent. (2021) Evidence of long-term purging of mutation load in killer whale genomes. bioRxiv - the preprint server for biology.
  Academic article
• Foote, Andrew; Hooper, Rebecca; Alexander, Alana; Baird, Robin; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Rosa, Luciano Dalla; Davison, Nicholas J.; Durban, John; Esteban, Ruth; Excoffier, Laurent; Martin, Sarah; Forney, Karin A.; Gerrodette, Tim; Gilbert, Marcus Thomas Pius. (2021) Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology. volum 30 (23).
  Academic article
• Hansen, Charles Christian Riis; Baleka, Sina; Gudjonsdottir, Solveig Magnea; Rasmussen, Jacob Agerbo; Chimal Ballesteros, Jesus Adrian; Hallgrimsson, Gunnar Thor; Stefansson, Robert A.; von Schmalensee, Menja; Skarphédinsson, Kristinn Haukur; Labansen, Aili Lage; Leivits, Madis; Skelmose, Kim; Sonne, Christian; Dietz, Rune; Boertmann, David; Eulaers, Igor; Martin, Michael David; Pálsson, Snæbjörn. (2021) Distinctive mitogenomic lineages within populations of white-tailed eagles (Haliaeetus albicilla). Journal of Ornithology. volum 139 (2).
  Academic article
• Meleshko, Olena; Martin, Michael David; Korneliussen, Thorfinn Sand; Schröck, Christian; Lamkowski, Paul; Schmutz, Jeremy; Healey, Adam; Piatkowski, Bryan T; Shaw, A. Jonathan; Weston, David J; Flatberg, Kjell Ivar; Szövényi, Péter; Hassel, Kristian; Stenøien, Hans K.. (2021) Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus. Molecular Biology and Evolution (MBE). volum 38 (7).
  Academic article
• Rasmussen, Jacob A.; Villumsen, Kasper Rømer; Duchêne, David; Puetz, Lara; Delmont, Tom; Sveier, Harald; von Gersdorff Jørgensen, Louise; Præbel, Kim; Martin, Michael David; Bojesen, Anders Miki; Gilbert, Marcus Thomas Pius; Kristiansen, Karsten; Limborg, Morten T.. (2021) Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. Communications Biology. volum 4.
  Academic article
• Rawlence, Nicolas J.; Knapp, Michael; Martin, Michael David; Wales, Nathan. (2021) Applied Uses of Ancient DNA. Frontiers in Ecology and Evolution. volum 9.
  Academic article
• Ristaino, Jean B.; Anderson, Pamela; Bebber, Daniel; Brauman, Kate; Cunniffe, Nik; Fedoroff, Nina; Finegold, Cambria; Garrett, Karen A.; Gilligan, Christopher; Jones, Christopher M.; Martin, Michael David; MacDonald, Graham K.; Neenan, Patricia; Records, Angela; Schmale, David G.; Tateosian, Laura; Wei, Qingshan. (2021) The persistent threat of emerging plant disease pandemics to global food security. Proceedings of the National Academy of Sciences of the United States of America. volum 118 (23).
  Academic article
• Speed, James David Mervyn; Chimal Ballesteros, Jesus Adrian; Martin, Michael David; Barrio, Isabel C.; Vuorinen, Katariina Elsa Maria; Soininen, Eeva Marjatta. (2021) Will borealization of Arctic tundra herbivore communities be driven by climate warming or vegetation change?. Global Change Biology. volum 27 (24).
  Academic article

2020

• Bakker, Freek T.; Martin, Michael David; Bieker, Vanessa Carina. (2020) Herbarium Collection-Based Plant Evolutionary Genetics and Genomics. Frontiers in Ecology and Evolution. volum 8.
  Editorial
• Barnett, Ross; Westbury, Michael V; Sandoval-Velasco, Marcela; Vieira, Filipe G.; Jeon, Sungwon; Zazula, Grant; Martin, Michael David; Ho, Simon Y.W.; Mather, Niklas; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmín; de Manuel, Marc; Zepeda-Mendoza, Marie Lisandra; Antunes, Agostinho; Carmona Baez, Aldo; De Cahsan, Binia; Larson, Greger; O'Brien, Stephen J.; Eizirik, Eduardo. (2020) Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat, Homotherium latidens. Current Biology. volum 30 (24).
  Academic article
• Bieker, Vanessa Carina; Sánchez Barreiro, Fatima; Rasmussen, Jacob Agerbo; Brunier, Marie; Wales, Nathan; Martin, Michael David. (2020) Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community. Molecular Ecology Resources. volum 20.
  Academic article
• de Manuel, Marc; Barnett, Ross; Sandoval-Velasco, Marcela; Yamaguchi, Nobuyuki; Vieira, Filipe G.; Lisandra Zepeda Mendoza, Zepeda; Liu, Shiping; Martin, Michael David; Sinding, Mikkel-Holger S.; Mak, Sarah Siu Tze; Carøe, Christian; Liu, Shanlin; Guo, Chunxue; Zheng, Jiao; Zazula, Grant; Baryshnikov, Gennady; Eizirik, Eduardo; Koepfli, Klaus-Peter; Johnson, Warren E.. (2020) The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. volum 117 (20).
  Academic literature review
• Dehasque, Marianne; Ávila-Arcos, María C; Díez-del-Molino, David; Fumagalli, Matteo; Guschanski, Katerina; Lorenzen, Eline D.; Malaspinas, Anna-Sapfo; Marques-Bonet, Tomas; Martin, Michael David; Murray, Gemma G.R.; Papadopulos, Alexander; Therkildsen, Nina Overgaard; Wegmann, Daniel; Dalén, Love; Foote, Andrew. (2020) Inference of natural selection from ancient DNA. Evolution Letters. volum 4 (2).
  Academic article
• Kistler, Logan; Bieker, Vanessa Carina; Martin, Michael David; Pedersen, Mikkel Winther; Madrigal, Jazmín Ramos; Wales, Nathan. (2020) Ancient plant genomics in archaeology, herbaria, and the environment. Annual Review of Plant Biology. volum 71.
  Academic article

2019

• Foote, Andrew D.; Martin, Michael David; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger; Amaral, Ana R.; Baird, Robin; Baker, Charles; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Rosa, Luciano Dalla; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth. (2019) Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology. volum 28 (14).
  Academic article
• Maurice, Sundy Ursula Mary Jane; Montes, Melanie; Nielsen, Bent J.; Bødker, Lars; Martin, Michael David; Jønck, Carina; Kjøller, Rasmus; Rosendahl, Søren. (2019) Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity. Molecular plant pathology. volum 20 (8).
  Academic article
• Mienna, Ida Marielle; Speed, James David Mervyn; Bendiksby, Mika; Thornhill, Andrew H.; Mishler, Brent D.; Martin, Michael David. (2019) Differential patterns of floristic phylogenetic diversity across a post-glacial landscape. Journal of Biogeography. volum 47.
  Academic article
• Speed, James David Mervyn; Skjelbred, Ina Åsnes; Barrio, Isabel C.; Martin, Michael David; Berteaux, Dominique; Bueno, C. Guillermo; Christie, Katie S.; Forbes, Bruce C.; Forbey, Jennifer; Fortin, Daniel; Grytnes, John-Arvid; Hoset, Katrine Skamfer; Lecomte, Nicolas; Marteinsdóttir, Bryndís; Mosbacher, Jesper Bruun; Pedersen, Åshild Ønvik; Ravolainen, Virve; Rees, Eileen C.; Skarin, Anna. (2019) Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome. Ecography. volum 42 (6).
  Academic article
• Thomas, Jessica E.; Carvalho, Gary R.; Haile, James; Rawlence, Nicolas J.; Martin, Michael David; Ho, Simon Y.W.; Sigfússon, Arnór Þ.; Jósefsson, Vigfús A.; Frederiksen, Morten; Linnebjerg, Jannie F.; Castruita, Jose A. Samaniego; Niemann, Jonas; Sinding, Mikkel-Holger S.; Sandoval-Velasco, Marcela; Soares, André E.R.; Lacy, Robert; Barilaro, Christina; Best, Julia; Brandis, Dirk. (2019) Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. eLIFE. volum 8:e47509.
  Academic article

2018

• Bieker, Vanessa Carina; Martin, Michael David. (2018) Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections. Botany Letters. volum 165 (3-4).
  Academic article
• Martin, Michael David; Quiroz-Claros, Elva; Brush, Grace S.; Zimmer, Elizabeth A.. (2018) Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae). Molecular Phylogenetics and Evolution. volum 120.
  Academic article
• O’Hanlon, Simon J; Rieux, Adrien; Farrer, Rhys A; Rosa, Gonçalo M; Waldman, Bruce; Bataille, Arnaud; Kosch, Tiffany A; Murray, Kris A; Brankovics, Balázs; Fumagalli, Matteo; Martin, Michael David; Wales, Nathan; Alvarado-Rybak, Mario; Bates, Kieran A.; Berger, Lee R.; Böll, Susanne; Brookes, Lola; Clare, Frances; Courtois, Elodie A.. (2018) Recent Asian origin of chytrid fungi causing global amphibian declines. Science. volum 360.
  Academic article

2017

• Grube, Martin; Gaya, Ester; Kauserud, Håvard; Smith, Adrian M.; Avery, Simon V.; Fernstad, Sara F.; Muggia, Lucia; Martin, Michael David; Eivindsen, Tove; Kõljalg, Urmas; Bendiksby, Mika. (2017) The next generation fungal diversity researcher. Fungal Biology Reviews. volum 31 (3).
  Academic literature review
• Martin, Michael David; Jay, Flora; Castellano, Sergi; Slatkin, Montgomery. (2017) Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations. Molecular Ecology. volum 26 (16).
  Academic article
• Sánchez Barreiro, Fatima; Vieira, Filipe G.; Martin, Michael D.; Haile, James; Gilbert, Marcus Thomas Pius; Wales, Nathan. (2017) Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources. volum 17 (2).
  Academic article
• Thomas, Jessica E; Carvalho, Gary R.; Haile, James; Martin, Michael David; Castruita, Jose A. Samaniego; Niemann, Jonas; Sinding, Mikkel Holger Strander; Sandoval-Velasco, Marcela; Rawlence, Nicolas J.; Fuller, Errol; Fjeldså, Jon; Hofreiter, Michael; Stewart, John R; Gilbert, Marcus Thomas Pius; Knapp, Michael. (2017) An ‛Aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks. Genes. volum 8 (6).
  Academic article

2016

• Foote, Andy; Vijay, Nagarjun; Avila-Arcos, Maria; Baird, Robin; Durban, John; Morin, Phillip; Fumagalli, Matteo; Gibbs, Richard; Hanson, Bradley; Korneliussen, Thorfinn; Martin, Michael D.; Robertson, Kelly; Sousa, Vitor; Vieira, Filipe G.; Vinar, Tomas; Wade, Paul; Worley, Kim; Excoffier, Laurent; Gilbert, M Thomas P. (2016) Genome-culture coevolution drives rapid divergence in the killer whale. Nature Communications. volum 7.
  Academic article
• Martin, Michael D; Olsen, Morten T; Samaniego, Jose; Zimmer, Elizabeth A; Gilbert, Marcus Thomas Pius. (2016) The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.). Ecology and Evolution. volum 6 (11).
  Academic article
• Martin, Michael D; Vieira, Filipe G; Ho, Simon Y W; Wales, Nathan; Schubert, Mikkel; Seguin-Orlando, Andaine; Ristaino, Jean B; Gilbert, M Thomas P. (2016) Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans. Molecular Biology and Evolution (MBE). volum 33.
  Academic article
• Saville, Amanda; Martin, Michael David; Ristaino, Jean B.. (2016) Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary. PLOS ONE. volum 11:e0168381 (12).
  Academic literature review

2015

• Der Sarkissian, Clio; Allentoft, M; Campos, Paula F; Cappellini, Enrico; Ermini, Luca; Fernandez, Ruth; Hansen, Anders J; Korneliussen, Thorfinn; Margaryan, Ashot; Martin, Michael D; Moreno-Mayar, J V; Raghavan, Maanasa; Rasmussen, Morten; Velasco, Marcela Sandoval; Schroeder, Hannes; Schubert, Mikkel; Seguin-Orlando, Andaine; Wales, Nathan; Gilbert, M Thomas P. (2015) Ancient genomics. Philosophical Transactions of the Royal Society of London. Biological Sciences. volum 370.
  Academic literature review

2014

• Martin, Michael D; Ho, Simon Y W; Wales, Nathan; Ristaino, Jean B; Gilbert, M Thomas P. (2014) Persistence of the mitochondrial lineage of the Irish potato famine pathogen in the New World. Molecular Biology and Evolution (MBE). volum 31.
  Academic article
• Martin, Michael D; Zimmer, Elizabeth A; Olsen, Morten T; Foote, Andrew D; Gilbert, M Thomas P; Brush, Grace S. (2014) Herbarium specimens reveal a phylogeographic shift in common ragweed during native range disturbance. Molecular Ecology. volum 23.
  Academic article
• Schubert, Mikkel; Ermini, Luca; Der Sarkissian, Clio; Jónsson, Hákon; Ginolhac, Aurélien; Schaefer, Robert; Fernández, Ruth; Martin, Michael D; Kircher, Martin; McCue, Molly E; Willerslev, Eske; Orlando, Ludovic. (2014) Characterizing ancient genomes: from sequence reads to SNP detection, phylogenomics, and metagenomics analyses. Nature Protocols. volum 9.
  Academic article
• Zhang, Guojie; Martin, Michael D; et al., -. (2014) Comparative genomics reveals insights into avian genome evolution and adaptation. Science. volum 346 (6215).
  Academic article

2013

• Martin, Michael D; Cappellini, Enrico; Samaniego, Jose; Zepeda, M. Lisandra; Campos, Paula F; Seguin-Orlando, Andaine; Wales, Nathan; Orlando, Ludovic; Ho, Simon Y W; Dietrich, Fred S; Mieczkowski, Piotr A; Heitman, Joseph; Willerslev, Eske; Krogh, Anders; Ristaino, Jean B; Gilbert, M Thomas P. (2013) Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications. volum 4.
  Academic article

2010

• Martin, Michael D; Chamecki, Marcelo; Brush, Grace. (2010) Anthesis synchronization and floral morphology determine diurnal patterns of ragweed pollen dispersal. Agricultural and Forest Meteorology. volum 150.
  Academic article

2009

• Martin, Michael D; Chamecki, Marcelo; Brush, Grace; Meneveau, Charles; Parlange, Marc. (2009) Pollen clumping and wind dispersal in an invasive angiosperm. American Journal of Botany. volum 96.
  Academic article