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Norsk

Nadav Bar

Nadav Bar

Professor
Department of Chemical Engineering
Faculty of Natural Sciences

nadi.bar@ntnu.no
+4773594124 +4746664743 Kjemi 4, 227, Gløshaugen, Sem Sælands vei 6
CyberGenome laboratory The Biosystems Lab website
About Publications Teaching Media

About

 

Our mission is to control the microworld. 

Combining biotechnology and control theory, we explore feedback control of microorganisms, particularly of bacteria. Our vision is to gain control over microbiological processes and to harness the power of microorganisms for research and industrial purposes.     

Awards:

  1. NEW! Coordinator of iCulure, a Horzon Europe project (7.8 mill EUR), will start 2023.
  2. Coordinator of iFermenter, a bio-based EU H2020 BBI-JU project, 5.6 mill Euro, 2018-2022.
  3. Coordinator of SafeFood, an EU project of 6 countries and 8 groups (about 2.5 mill euro, 2016-2019).
    • The main aim of the project is to turn food products (ready-to-eat products based on meat, fish and vegetables) safer and more durable, by reducing or inhibit the ability of Listeria monocytogenes to recover from high pressure processing (HPP). This can extend the shelf-life of food, increasing its resistance to food-related bacteria (by rendering the food “non-hospitable” for this type of bacteria) and decrease the amount of food waste from processing and throughout the food chain. Cutting edge biotechnological methods were applied in this project.
  4. Leader in ERA SysMed-COPD project, 5.1 mill NOK (2018-2022), Here we use machine learning to improve diagnosis and prognosis for COPD.
  5. BacPress: :Qualification Project Norwegian research Council 2021.
  6. Head of the BioSystems feedback control real-time fermentation laboratory (MFCL). 

RESEARCH AREA:

  • Feedback control of bacteria (e.g. L. monocytogenes, C. glutamicum)
  • Transcription and translation regulation - modelling, analysis and control
  • Sensory motor control in animals (neuroscience)
  • Bioinformatics tools: Gene network discovery  (advance analysis tools)
  • cellular regulation and signaling (modelling)

Current PhD students:

  • Andrea Tuveri
  • Fabienne Roessler
  • Alex Wong

Former and Graduated students: (PhD level)

  • Naresh D. Jayavelu, PhD 
  • Jørgen Skancke, PhD
  • Haakon Holck
  • Pedro Lira
  • Bahareh Nikvarpar

 Graduated Students (M.Sc level)

  • 14 students

Publications

  • Chronological
  • By category
  • See all publications in Cristin

2022

  • Bar, Nadav; Nikparvar, Bahareh; Doni Jayavelu, Naresh; Roessler, Fabienne Krystin. (2022) Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions. BMC Bioinformatics. volum 23 (1).
    Academic article
  • Ovchinnikov, Kirill; Oftedal, Thomas Førland; Reich, Sebastian J.; Bar, Nadav; Holo, Helge; Skaugen, Morten; Riedel, Christian U.; Diep, Dzung B.. (2022) Genome-assisted Identification, Purification, and Characterization of Bacteriocins. Bio-protocol. volum 12 (14).
    Academic article
  • Tuveri, Andrea; Eng Holck, Haakon; Nakama, Caroline Satye; Matias, José O.A.; Jäschke, Johannes; Imsland, Lars Struen; Bar, Nadav S. (2022) Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application. IFAC-PapersOnLine.
    Short communication
  • Weixler, D.; Berghoff, M; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.; Wittmann, Christoph; Bar, Nadav S; Eikmanns, Bernhard J; Diep, Dzung B.; Riedel, Christian U.. (2022) Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process. Microbial Cell Factories. volum 21 (11).
    Academic article
  • Weixler, Dominik; Berghoff, Max; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.; Wittmann, Christoph; Bar, Nadav S; Eikmanns, Bernhard J.; Diep, Dzung B.; Riedel, Christian U.. (2022) Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y). Microbial Cell Factories. volum 21 (1).
    Errata

2021

  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Nikparvar, Bahareh; Ylinen, Anne; Grigore-Gurgu, Leontina; Rode, Tone Mari; Crauwels, Peter; Laine, Pia; Paulin, Lars; Løvdal, Trond; Riedel, Christian U.; Bar, Nadav; Borda, Daniela; Nicolau, Anca Ioana; Auvinen, Petri. (2021) High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes. BMC Genomics. volum 22 (1).
    Academic article
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Ylinen, Anne; Crauwels, Peter; Grigore-Gurgu, Leontina; Nikparvar, Bahareh; Rode, Tone Mari; Laine, Pia; Paulin, Lars; Løvdal, Trond; Riedel, Christian U.; Bar, Nadav; Borda, Daniela; Nicolau, Anca Ioana; Auvinen, Petri. (2021) The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing. BMC Research Notes. volum 14 (1).
    Academic article
  • Goldbeck, Oliver; Desef, Dominique N; Ovchinnikov, Kirill; Perez-Garcia, Fernando; Christmann, Jens; Sinner, Peter; Crauwels, Peter; Weixler, Dominik; Cao, Peng; Becker, Judith; Kohlstedt, Michael; Kager, Julian; Eikmanns, Bernhard J; Seibold, Gerd M.; Herwig, Christoph; Wittmann, Christoph; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.. (2021) Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum. Metabolic Engineering. volum 68.
    Academic article
  • Lira Parada, Pedro Antonio; Pettersen, Even; Biegler, Lorenz T.; Bar, Nadav S. (2021) Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability. Chemical Engineering Journal. volum 417.
    Academic article
  • Lira Parada, Pedro Antonio; Tuveri, Andrea; Seibold, Gerd M.; Bar, Nadav. (2021) Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum. Biochemical engineering journal. volum 170 (107989).
    Academic article
  • Nikparvar, Bahareh; Andreevskaya, Margarita; Duru, Ilhan C.; Bucur, Florentina I.; Leontina, Grigore-Gurgu; Borda, Daniela; Nicolau, Anca I.; Riedel, Christian U.; Auvinen, Petri; Bar, Nadav. (2021) Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing. BMC Genomics. volum 22 (266).
    Academic article
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez-Herrero, Manuela; Crauwels, Peter; Riedel, Christian U.; Bar, Nadav. (2021) A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data. Frontiers in Microbiology. volum 12.
    Academic article
  • Perez-Garcia, Fernando; Burgardt, Arthur; Kallman, Dina Riis; Wendisch, Volker F.; Bar, Nadav. (2021) Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin. Fermentation. volum 7 (1).
    Academic article
  • Roessler, Fabienne K.; Benedikter, Birke J.; Schmeck, Bernd; Bar, Nadav. (2021) Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples. Scientific Reports.
    Academic article
  • Tuveri, Andrea; Pérez-García, Fernando; Lira Parada, Pedro Antonio; Imsland, Lars; Bar, Nadav. (2021) Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring. Journal of Process Control. volum 106.
    Academic article

2020

  • Duru, Ilhan Cem; Andreevskaya, Margarita; Laine, Pia; Rode, Tone Mari; Ylinen, Anne; Løvdal, Trond Karsten; Bar, Nadav; Crauwels, Peter; Riedel, Christian U.; Bucur, Florentina Ionela; Nicolau, Anca Ioana; Auvinen, Petri. (2020) Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing. BMC Genomics. volum 21.
    Academic article

2019

  • Franssen, Frits M. E.; Alter, Peter; Bar, Nadav; Benedikter, Birke J.; Iurato, Stella; Maier, Dieter; Maxheim, Michael; Rössler, Fabienne; Spruit, Martijn A.; Vogelmeier, Claus F.; Wouters, Emiel F.M.; Schmeck, Bernd. (2019) Personalized medicine for patients with COPD: where are we?. The International Journal of Chronic Obstructive Pulmonary Disease. volum 14.
    Scientific translation/review
  • Lira Parada, Pedro Antonio; Pettersen, Even; Bar, Nadav. (2019) Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields. IFAC-PapersOnLine. volum 52 (1).
    Academic article
  • Lira Parada, Pedro Antonio; Pettersen, Even; Perez-Garcia, Fernando; Bar, Nadav S. (2019) The development of a fed-batch Corynebacterium glutamicum fermentation model. IFAC-PapersOnLine. volum 52 (26).
    Academic article
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez, Manuela; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing. IFAC-PapersOnLine. volum 52 (1).
    Academic article

2018

  • Crauwels, Peter; Schäfer, Leonie; Weixler, Dominik; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.; Seibold, Gerd M.. (2018) Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes. Frontiers in Microbiology. volum 9.
    Academic article

2017

  • Jayavelu, Naresh; Bar, Nadav. (2017) ISNCA: A new iterative approach for constrained matrix factorization methods. Journal of Process Control. volum 60.
    Academic article

2016

  • Bar, Nadav; Jayavelu, Naresh. (2016) New iterative approach (ISNCA) for constrained matrix factorization methods. IFAC-PapersOnLine. volum 49 (7).
    Academic article

2015

  • Bar, Nadav; Skogestad, Sigurd; Marçal, Jose M.; Ulanovsky, Nachum; Yovel, Yossi. (2015) A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark. PLoS Biology. volum 13 (1).
    Academic article
  • Doni Jayavelu, Naresh; Aasgaard, Lasse Svenkerud; Bar, Nadav. (2015) Iterative sub-network component analysis enables reconstruction of large scale genetic networks. BMC Bioinformatics. volum 16 (1).
    Academic article
  • Doni Jayavelu, Naresh; Bar, Nadav. (2015) Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line. BMC Genomics. volum 16 (1).
    Academic article
  • Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. (2015) Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry. volum 54 (28).
    Academic article

2014

  • Bar, Nadav. (2014) Physiological and hormonal changes during prolonged starvation in fish. Canadian Journal of Fisheries and Aquatic Sciences. volum 71 (10).
    Academic article
  • Doni, Jayavelu Naresh; Bar, Nadav. (2014) Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells. PLOS ONE. volum 9 (1).
    Academic article
  • Jayavelu, Naresh Doni; Bar, Nadav. (2014) Metabolomic studies of human gastric cancer: Review. World Journal of Gastroenterology (WJG). volum 20 (25).
    Scientific translation/review

2013

  • Doni Jayavelu, Naresh; Bar, Nadav. (2013) A Noise Removal Algorithm for Time Series Microarray Data. Progress in Artificial Intelligence.
    Academic chapter/article

2012

  • Bar, Nadav; Volkoff, Helene. (2012) Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish. Comparative Physiology of Fasting, Starvation, and Food Limitation.
    Academic chapter/article
  • Djebali, S; Davis, CA; Merkel, Angelika; Dobin, A; Lassmann, T; Mortazavi, A; Tanzer, A; Lagarde, J; Lin, Wei; Schlesinger, F; Xue, CH; Marinov, GK; Khatun, Jainab; Williams, Brian A; Zaleski, C; Rozowsky, J; Röder, M; Kokocinski, F; Abdelhamid, RF; Alioto, T; Antoshechkin, I; Baer, M.; Bar, Nadav; Batut, P; Bell, K; Bell, I; Chakrabortty, S; Chen, X; Chrast, J; Curado, J; Derrien, T; Drenkow, J; Dumais, E; Dumais, J; Duttagupta, R; Falconnet, E; Fastuca, M; Fejes-Toth, K; Ferreira, P.; Foissac, S; Fullwood, MJ; Gao, H; Gonzalez, D; Gordon, A; Gunawardena, H; Howald, C; Jha, Sonali; Johnson, R.; Kapranov, P; King, B; Kingswood, C; Luo, OJ; Park, Eddie; Persaud, K; Preall, JB; Ribeca, P; Risk, B; Robyr, D; Sammeth, M; Schaffer, L; See, LH; Shahab, A; Skancke, Jørgen; Suzuki, AM; Takahashi, H; Tilgner, H; Trout, D; Walters, N; Wang, Huaien; Wrobel, J; Yu, YB; Ruan, XA; Hayashizaki, Yoshihide; Harrow, J; Gerstein, M; Hubbard, Tim; Reymond, A; Antonarakis, SE; Hannon, Gregory; Giddings, MC; Ruan, YJ; Wold, B; Carninci, Piero; Guigo, R; Gingeras, TR. (2012) Landscape of transcription in human cells. Nature. volum 489 (7414).
    Academic article

2010

  • Radde, Nicole; Bar, Nadav; Banaji, Murad. (2010) Graphical Methods for analysing feedback in biological networks - A survey. International Journal of Systems Science. volum 41 (1).
    Academic article

2009

  • Bar, Nadav. (2009) Analysis of protein synthesis dynamic model in eukaryotic cells: Input control. Mathematical Biosciences. volum 219 (2).
    Academic article
  • Bar, Nadav; Radde, Nicole. (2009) Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model. BMC Systems Biology. volum 3.
    Academic article

2008

  • Bar, Nadav; Lale, Rahmi. (2008) Modeling and Control of the Protein Synthesis process in Eukaryotic cells. Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes.
    Academic article

2007

  • Bar, Nadav; Morris, David R.. (2007) Dynamic model of the process of protein synthesis in eukaryotic cells. Bulletin of Mathematical Biology. volum 69.
    Academic article
  • Bar, Nadav; Sigholt, Trygve; Shearer, Karl; Krogdahl, Åshild. (2007) A dynamic model of nutrient Pathways, growth and body composition in fish. Canadian Journal of Fisheries and Aquatic Sciences. volum 64 (12).
    Academic article

2005

  • Imsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2005) More Efficient Predictive Control. Automatica. volum 41 (8).
    Academic article

Scientific articles

  • Bar, Nadav; Nikparvar, Bahareh; Doni Jayavelu, Naresh; Roessler, Fabienne Krystin. (2022) Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions. BMC Bioinformatics. volum 23 (1).
    Academic article
  • Ovchinnikov, Kirill; Oftedal, Thomas Førland; Reich, Sebastian J.; Bar, Nadav; Holo, Helge; Skaugen, Morten; Riedel, Christian U.; Diep, Dzung B.. (2022) Genome-assisted Identification, Purification, and Characterization of Bacteriocins. Bio-protocol. volum 12 (14).
    Academic article
  • Weixler, D.; Berghoff, M; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.; Wittmann, Christoph; Bar, Nadav S; Eikmanns, Bernhard J; Diep, Dzung B.; Riedel, Christian U.. (2022) Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process. Microbial Cell Factories. volum 21 (11).
    Academic article
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Nikparvar, Bahareh; Ylinen, Anne; Grigore-Gurgu, Leontina; Rode, Tone Mari; Crauwels, Peter; Laine, Pia; Paulin, Lars; Løvdal, Trond; Riedel, Christian U.; Bar, Nadav; Borda, Daniela; Nicolau, Anca Ioana; Auvinen, Petri. (2021) High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes. BMC Genomics. volum 22 (1).
    Academic article
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Ylinen, Anne; Crauwels, Peter; Grigore-Gurgu, Leontina; Nikparvar, Bahareh; Rode, Tone Mari; Laine, Pia; Paulin, Lars; Løvdal, Trond; Riedel, Christian U.; Bar, Nadav; Borda, Daniela; Nicolau, Anca Ioana; Auvinen, Petri. (2021) The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing. BMC Research Notes. volum 14 (1).
    Academic article
  • Goldbeck, Oliver; Desef, Dominique N; Ovchinnikov, Kirill; Perez-Garcia, Fernando; Christmann, Jens; Sinner, Peter; Crauwels, Peter; Weixler, Dominik; Cao, Peng; Becker, Judith; Kohlstedt, Michael; Kager, Julian; Eikmanns, Bernhard J; Seibold, Gerd M.; Herwig, Christoph; Wittmann, Christoph; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.. (2021) Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum. Metabolic Engineering. volum 68.
    Academic article
  • Lira Parada, Pedro Antonio; Pettersen, Even; Biegler, Lorenz T.; Bar, Nadav S. (2021) Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability. Chemical Engineering Journal. volum 417.
    Academic article
  • Lira Parada, Pedro Antonio; Tuveri, Andrea; Seibold, Gerd M.; Bar, Nadav. (2021) Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum. Biochemical engineering journal. volum 170 (107989).
    Academic article
  • Nikparvar, Bahareh; Andreevskaya, Margarita; Duru, Ilhan C.; Bucur, Florentina I.; Leontina, Grigore-Gurgu; Borda, Daniela; Nicolau, Anca I.; Riedel, Christian U.; Auvinen, Petri; Bar, Nadav. (2021) Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing. BMC Genomics. volum 22 (266).
    Academic article
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez-Herrero, Manuela; Crauwels, Peter; Riedel, Christian U.; Bar, Nadav. (2021) A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data. Frontiers in Microbiology. volum 12.
    Academic article
  • Perez-Garcia, Fernando; Burgardt, Arthur; Kallman, Dina Riis; Wendisch, Volker F.; Bar, Nadav. (2021) Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin. Fermentation. volum 7 (1).
    Academic article
  • Roessler, Fabienne K.; Benedikter, Birke J.; Schmeck, Bernd; Bar, Nadav. (2021) Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples. Scientific Reports.
    Academic article
  • Tuveri, Andrea; Pérez-García, Fernando; Lira Parada, Pedro Antonio; Imsland, Lars; Bar, Nadav. (2021) Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring. Journal of Process Control. volum 106.
    Academic article
  • Duru, Ilhan Cem; Andreevskaya, Margarita; Laine, Pia; Rode, Tone Mari; Ylinen, Anne; Løvdal, Trond Karsten; Bar, Nadav; Crauwels, Peter; Riedel, Christian U.; Bucur, Florentina Ionela; Nicolau, Anca Ioana; Auvinen, Petri. (2020) Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing. BMC Genomics. volum 21.
    Academic article
  • Lira Parada, Pedro Antonio; Pettersen, Even; Bar, Nadav. (2019) Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields. IFAC-PapersOnLine. volum 52 (1).
    Academic article
  • Lira Parada, Pedro Antonio; Pettersen, Even; Perez-Garcia, Fernando; Bar, Nadav S. (2019) The development of a fed-batch Corynebacterium glutamicum fermentation model. IFAC-PapersOnLine. volum 52 (26).
    Academic article
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez, Manuela; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing. IFAC-PapersOnLine. volum 52 (1).
    Academic article
  • Crauwels, Peter; Schäfer, Leonie; Weixler, Dominik; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.; Seibold, Gerd M.. (2018) Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes. Frontiers in Microbiology. volum 9.
    Academic article
  • Jayavelu, Naresh; Bar, Nadav. (2017) ISNCA: A new iterative approach for constrained matrix factorization methods. Journal of Process Control. volum 60.
    Academic article
  • Bar, Nadav; Jayavelu, Naresh. (2016) New iterative approach (ISNCA) for constrained matrix factorization methods. IFAC-PapersOnLine. volum 49 (7).
    Academic article
  • Bar, Nadav; Skogestad, Sigurd; Marçal, Jose M.; Ulanovsky, Nachum; Yovel, Yossi. (2015) A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark. PLoS Biology. volum 13 (1).
    Academic article
  • Doni Jayavelu, Naresh; Aasgaard, Lasse Svenkerud; Bar, Nadav. (2015) Iterative sub-network component analysis enables reconstruction of large scale genetic networks. BMC Bioinformatics. volum 16 (1).
    Academic article
  • Doni Jayavelu, Naresh; Bar, Nadav. (2015) Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line. BMC Genomics. volum 16 (1).
    Academic article
  • Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. (2015) Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry. volum 54 (28).
    Academic article
  • Bar, Nadav. (2014) Physiological and hormonal changes during prolonged starvation in fish. Canadian Journal of Fisheries and Aquatic Sciences. volum 71 (10).
    Academic article
  • Doni, Jayavelu Naresh; Bar, Nadav. (2014) Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells. PLOS ONE. volum 9 (1).
    Academic article
  • Djebali, S; Davis, CA; Merkel, Angelika; Dobin, A; Lassmann, T; Mortazavi, A; Tanzer, A; Lagarde, J; Lin, Wei; Schlesinger, F; Xue, CH; Marinov, GK; Khatun, Jainab; Williams, Brian A; Zaleski, C; Rozowsky, J; Röder, M; Kokocinski, F; Abdelhamid, RF; Alioto, T; Antoshechkin, I; Baer, M.; Bar, Nadav; Batut, P; Bell, K; Bell, I; Chakrabortty, S; Chen, X; Chrast, J; Curado, J; Derrien, T; Drenkow, J; Dumais, E; Dumais, J; Duttagupta, R; Falconnet, E; Fastuca, M; Fejes-Toth, K; Ferreira, P.; Foissac, S; Fullwood, MJ; Gao, H; Gonzalez, D; Gordon, A; Gunawardena, H; Howald, C; Jha, Sonali; Johnson, R.; Kapranov, P; King, B; Kingswood, C; Luo, OJ; Park, Eddie; Persaud, K; Preall, JB; Ribeca, P; Risk, B; Robyr, D; Sammeth, M; Schaffer, L; See, LH; Shahab, A; Skancke, Jørgen; Suzuki, AM; Takahashi, H; Tilgner, H; Trout, D; Walters, N; Wang, Huaien; Wrobel, J; Yu, YB; Ruan, XA; Hayashizaki, Yoshihide; Harrow, J; Gerstein, M; Hubbard, Tim; Reymond, A; Antonarakis, SE; Hannon, Gregory; Giddings, MC; Ruan, YJ; Wold, B; Carninci, Piero; Guigo, R; Gingeras, TR. (2012) Landscape of transcription in human cells. Nature. volum 489 (7414).
    Academic article
  • Radde, Nicole; Bar, Nadav; Banaji, Murad. (2010) Graphical Methods for analysing feedback in biological networks - A survey. International Journal of Systems Science. volum 41 (1).
    Academic article
  • Bar, Nadav. (2009) Analysis of protein synthesis dynamic model in eukaryotic cells: Input control. Mathematical Biosciences. volum 219 (2).
    Academic article
  • Bar, Nadav; Radde, Nicole. (2009) Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model. BMC Systems Biology. volum 3.
    Academic article
  • Bar, Nadav; Lale, Rahmi. (2008) Modeling and Control of the Protein Synthesis process in Eukaryotic cells. Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes.
    Academic article
  • Bar, Nadav; Morris, David R.. (2007) Dynamic model of the process of protein synthesis in eukaryotic cells. Bulletin of Mathematical Biology. volum 69.
    Academic article
  • Bar, Nadav; Sigholt, Trygve; Shearer, Karl; Krogdahl, Åshild. (2007) A dynamic model of nutrient Pathways, growth and body composition in fish. Canadian Journal of Fisheries and Aquatic Sciences. volum 64 (12).
    Academic article
  • Imsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2005) More Efficient Predictive Control. Automatica. volum 41 (8).
    Academic article

Journal publications

  • Tuveri, Andrea; Eng Holck, Haakon; Nakama, Caroline Satye; Matias, José O.A.; Jäschke, Johannes; Imsland, Lars Struen; Bar, Nadav S. (2022) Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application. IFAC-PapersOnLine.
    Short communication
  • Weixler, Dominik; Berghoff, Max; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.; Wittmann, Christoph; Bar, Nadav S; Eikmanns, Bernhard J.; Diep, Dzung B.; Riedel, Christian U.. (2022) Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y). Microbial Cell Factories. volum 21 (1).
    Errata
  • Franssen, Frits M. E.; Alter, Peter; Bar, Nadav; Benedikter, Birke J.; Iurato, Stella; Maier, Dieter; Maxheim, Michael; Rössler, Fabienne; Spruit, Martijn A.; Vogelmeier, Claus F.; Wouters, Emiel F.M.; Schmeck, Bernd. (2019) Personalized medicine for patients with COPD: where are we?. The International Journal of Chronic Obstructive Pulmonary Disease. volum 14.
    Scientific translation/review
  • Jayavelu, Naresh Doni; Bar, Nadav. (2014) Metabolomic studies of human gastric cancer: Review. World Journal of Gastroenterology (WJG). volum 20 (25).
    Scientific translation/review

Part of book/report

  • Doni Jayavelu, Naresh; Bar, Nadav. (2013) A Noise Removal Algorithm for Time Series Microarray Data. Progress in Artificial Intelligence.
    Academic chapter/article
  • Bar, Nadav; Volkoff, Helene. (2012) Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish. Comparative Physiology of Fasting, Starvation, and Food Limitation.
    Academic chapter/article

Teaching

Courses

  • TKP4580 - Chemical Engineering, Specialization Project
  • TKP4195 - Bio-Systems Engineering
  • TKP4581 - Chemical Engineering, Specialization Project
  • KP8130 - Systembiology, Modelling and Analysis
  • TKP4555 - Process Systems Engineering, Specialization Course

Media

2015

  • Popular scientific lecture
    Bar, Nadav. (2015) Den mystiske flaggermusen. Researchers Night . Samarbeidsforum; NTNU. 2015-12-08.
  • Programme participation
    Bar, Nadav. (2015) En dynamisk systembiologimodell forklarer forskjellen på flaggermusens flyvning i dagslys og mørket. Schrødingers katt, NRK [TV]. 2015-05-19.
  • Interview
    Bar, Nadav. (2015) Slik flyr en flaggermus. Gemini [Fagblad]. 2015-05-28.
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