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  1. Employees

Språkvelger

Norsk

Rune Sætre

Rune Sætre

Asc. Prof, and Chief Employee Representative Tekna/Akad NTNU
Department of Computer Science
Faculty of Information Technology and Electrical Engineering

satre@ntnu.no
+4773596101 IT-bygget, 104, Gløshaugen, Sem Sælands vei 9
ResearchGate Google Scholar Rune Sætre Tekna / Akad NTNU
About Publications Teaching Media

About

CV

Private page: http://www.idi.ntnu.no/~satre

  • Kunstig Intelligens (AI). driver Buss-Orakelet for AtB i Trondheim
  • Helsetjeneste-forskning, og språkforståelse i medisinske tekster
  • FastlegeVakten varslingstjeneste

Group: Information Systems and Software Engineering (Campus photos)

Union Leader: Tekna NTNU and Akademikerne NTNU

Projects: PAsTAs,  TUC

Interests: 

  • Health informatics research: PAsTAs, and BioNLP
  • Teaching several IT courses on BSc, MSc and PhD level

Publications:

  • Cristin ( Index - Norwegian Universities Research Results )
  • Google Scholar, DBLP, CiteSeer

Teaching last 10 years:

  • Object-Oriented Programming with Python, C++ and Java
  • Semantic Web (Examiner)

Competencies

  • Computer technology

Publications

  • Chronological
  • By category
  • See all publications in Cristin

2019

  • Wang, Alf Inge; Sætre, Rune; Rydland, Terje; Dahl, Yngve. (2019) Evaluation of Interactive and Gamified Approaches for Teaching ICT Theory - A Study of PowerPoint, Sembly, and Kahoot!. Proceedings of the European Conference on Games Based Learning (ECGBL).
    Academic article

2017

  • Marsi, Erwin; Sikdar, Utpal Kumar; Marco, Cristina; Barik, Biswanath; Sætre, Rune. (2017) NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. 11th International Workshop on Semantic Evaluations (SemEval-2017).
    Academic chapter/article/Conference paper

2016

  • Bøhler, Henrik; Asla, Petter Fagerlund; Marsi, Erwin; Sætre, Rune. (2016) IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation. The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop..
    Academic chapter/article/Conference paper
  • Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak. (2016) Visual exploration and cohort identification of acute patient histories aggregated from heterogeneous sources. 2016 IEEE 32nd International Conference on Data Engineering Workshops.
    Academic chapter/article/Conference paper
  • Wang, Alf Inge; Zhu, Meng; Sætre, Rune. (2016) The Effect of Digitizing and Gamifying Quizzing in Classrooms. Proceedings of The 10th European Conference on Games Based Learning.
    Academic chapter/article/Conference paper

2015

  • Dahl, Unni Alice; Johnsen, Roar; Sætre, Rune; Steinsbekk, Aslak. (2015) The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study. BMC Health Services Research. volum 15 (48).
    Academic article

2014

  • Steinsbekk, Aslak; Berntsen, Gro Karine Rosvold; Schrader, Per; Sætre, Rune; Nytrø, Øystein. (2014) Patients Judgment of Their Trajectories. International Journal of Integrated Care (IJIC). volum 14.
    Abstract

2013

  • Stav, Erlend; Floch, Jacqueline; Khan, Mohammad Ullah; Sætre, Rune. (2013) Using Meta-modelling for Construction of an End-User Development Framework. End-User Development.
    Academic chapter/article/Conference paper

2012

  • Andersstuen, Runar; Engell, Trond Bøe; Sætre, Rune; Gambäck, Björn. (2012) A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
    Academic article
  • Marcussen, Christian Jun; Eliassen, Lars Moland; Sætre, Rune; Gambäck, Björn. (2012) Context-Awareness and Real-Time Information in an Intelligent Smartphone Application. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
    Academic article
  • Sætre, Rune; Gulla, Jon Atle. (2012) FastlegeVakten. Endors.no, Norge. 2012.
    Software

2011

  • Arighi, Cecilia N; Roberts, Phoebe M; Shashank, Agarwal; Bhattacharya, Sanmitra; Gianni, Cesareni; Chatr-aryamontri, Andrew; Clematide, Simon; Gaudet, Pascale; Giglio, Michelle Gwinn; Harrow, Ian; Huala, Eva; Krallinger, Martin; Leser, Ulf; Li, Donghui; Liu, Feifan; Lu, Zhlyong; Maltais, Lois J; Okazaki, Naoaki; Perfetto, Livia; Rinaldi, Fabio; Sætre, Rune; Salgado, David; Srinivasan, Padmini; Thomas, Philippe E; Toldo, Luca; Hirschman, Lynette; Wu, Cathy H.. (2011) BioCreative III interactive task: an overview. BMC Bioinformatics. volum 12.
    Academic article
  • Floch, Jacqueline; Herrmann, Peter Michael; Khan, Mohammad Ullah; Sanders, Richard; Stav, Erlend; Sætre, Rune. (2011) End-User Service Composition in Mobile Pervasive Environments. Lecture Notes in Computer Science (LNCS). volum 6654.
    Abstract
  • Kano, Yoshinobu; Björne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, Kevin Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E.; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Peer, Yves; Miwa, Makoto; Ananiadou, Sophia; Neves, Mariana; Pascual-Montano, Alberto; Ozgur, Arzucan; Radev, Dragomir R.; Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Kim, Jin-Dong; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics. volum 12.
    Academic article
  • Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
    Academic chapter/article/Conference paper
  • Kocbek, Simon; Sætre, Rune; Stiglic, Gregor; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) AGRA: analysis of gene ranking algorithms. Bioinformatics. volum 27 (8).
    Academic article
  • Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Takagi, Toshihisa; Tsujii, Jun'ichi. (2011) BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC. Computational intelligence. volum 27 (4).
    Academic article
  • Rinaldi, Fabio; Kaljurand, Kaarel; Sætre, Rune. (2011) Terminological resources for text mining over biomedical scientific literature. Artificial Intelligence in Medicine. volum 52 (2).
    Academic article
  • Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael. (2011) End-user Composition of Web-based Services: The “Plus Alpha” Approach. Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011.
    Other
  • Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle. (2011) Towards Ontology-Driven End-User Composition of Personalized Mobile Services. Lecture Notes in Computer Science (LNCS). volum 6716.
    Academic article

2010

  • Miwa, Makoto; Sætre, Rune; Kim, Jin-Dong; Tsujii, Jun'ichi. (2010) Event Extraction with Complex Event Classification Using Rich Features. Journal of Bioinformatics and Computational Biology. volum 8 (1).
    Academic article
  • Ohta, Tomoko; Matsuzaki, Takuya; Okazaki, Naoaki; Miwa, Makoto; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2010) Medie and Info-pubmed: 2010 update. BMC Bioinformatics. volum 11 (5).
    Academic article
  • Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Yoshinobu, Kano; Tsujii, Jun'ichi. (2010) Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE/ACM Transactions on Computational Biology & Bioinformatics. volum 7.
    Academic article
  • Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2010) Improving the Inter-corpora Compatibility for Protein Annotations. Journal of Bioinformatics and Computational Biology. volum 8 (5).
    Academic article

2009

  • Miwa, Makoto; Sætre, Rune; Miyao, Yusuke; Tsujii, Jun'ichi. (2009) Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers. International Journal of Medical Informatics. volum 78 (12).
    Academic article
  • Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2009) Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics. volum 10 (403).
    Academic article

2008

  • Leitner, Florian; Krallinger, Martin; Rodriguez-Penagos, Carlos; Hakenberg, Jörg; Plake, Conrad; Kuo, Cheng-Ju; Hsu, CH; Tsai, Richard TH; Hung, HC; Lau, William W; Johnson, Calvin A; Sætre, Rune; Yoshida, Kazuhiro; Chen, Yan Hua; Kim, S; Shin, SY; Zhang, BT; Baumgartner, WA; Hunter, L; Haddow, B; Matthews, M; Wang, XL; Ruch, P; Ehrler, F; Ozgur, A; Erkan, G; Radev, DR; Krauthammer, M; Luong, T; Hoffmann, R; Sander, C; Valencia, A. (2008) Introducing meta-services for biomedical information extraction. Genome Biology. volum 9.
    Academic article
  • Miyao, Yusuke; Sagae, Kenji; Sætre, Rune; Matsuzaki, Takuya; Tsujii, Jun'ichi. (2008) Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction. Bioinformatics. volum 25 (3).
    Academic article

2007

  • Sætre, Rune; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Stunes, Kamilla; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Webprot : online mining and annotation of biomedical literature using Google. Advanced computational methods for biocomputing and bioimaging.
    Academic chapter/article/Conference paper

2006

  • Sætre, Rune; Amble, Tore. (2006) GeneTUC: Natural Language Understanding in Medical Text. 2006. ISBN 82-471-7866-4. Doktoravhandlinger ved NTNU (59).
    Doctoral dissertation
  • Sætre, Rune; Søvik, Harald; Amble, Tore; Tsuruoka, Yoshimasa. (2006) GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature. Lecture Notes in Computer Science (LNCS). volum 4070 (V).
    Academic article

2005

  • Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Lecture Notes in Computer Science (LNCS). volum 3683.
    Academic article
  • Tveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. Proceedings - International Conference on Data Engineering.
    Academic article
  • Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Thommesen, Liv; Stunes, Kamilla; Lægreid, Astrid. (2005) gProt: Annotating protein interactions using Google and Gene Ontology. Lecture Notes in Computer Science.
    Academic chapter/article/Conference paper
  • Sætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic annotation of biomedical literature using Google. Lecture Notes in Computer Science (LNCS). volum 3482 (3).
    Academic article

Journal publications

  • Wang, Alf Inge; Sætre, Rune; Rydland, Terje; Dahl, Yngve. (2019) Evaluation of Interactive and Gamified Approaches for Teaching ICT Theory - A Study of PowerPoint, Sembly, and Kahoot!. Proceedings of the European Conference on Games Based Learning (ECGBL).
    Academic article
  • Dahl, Unni Alice; Johnsen, Roar; Sætre, Rune; Steinsbekk, Aslak. (2015) The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study. BMC Health Services Research. volum 15 (48).
    Academic article
  • Steinsbekk, Aslak; Berntsen, Gro Karine Rosvold; Schrader, Per; Sætre, Rune; Nytrø, Øystein. (2014) Patients Judgment of Their Trajectories. International Journal of Integrated Care (IJIC). volum 14.
    Abstract
  • Andersstuen, Runar; Engell, Trond Bøe; Sætre, Rune; Gambäck, Björn. (2012) A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
    Academic article
  • Marcussen, Christian Jun; Eliassen, Lars Moland; Sætre, Rune; Gambäck, Björn. (2012) Context-Awareness and Real-Time Information in an Intelligent Smartphone Application. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
    Academic article
  • Arighi, Cecilia N; Roberts, Phoebe M; Shashank, Agarwal; Bhattacharya, Sanmitra; Gianni, Cesareni; Chatr-aryamontri, Andrew; Clematide, Simon; Gaudet, Pascale; Giglio, Michelle Gwinn; Harrow, Ian; Huala, Eva; Krallinger, Martin; Leser, Ulf; Li, Donghui; Liu, Feifan; Lu, Zhlyong; Maltais, Lois J; Okazaki, Naoaki; Perfetto, Livia; Rinaldi, Fabio; Sætre, Rune; Salgado, David; Srinivasan, Padmini; Thomas, Philippe E; Toldo, Luca; Hirschman, Lynette; Wu, Cathy H.. (2011) BioCreative III interactive task: an overview. BMC Bioinformatics. volum 12.
    Academic article
  • Floch, Jacqueline; Herrmann, Peter Michael; Khan, Mohammad Ullah; Sanders, Richard; Stav, Erlend; Sætre, Rune. (2011) End-User Service Composition in Mobile Pervasive Environments. Lecture Notes in Computer Science (LNCS). volum 6654.
    Abstract
  • Kano, Yoshinobu; Björne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, Kevin Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E.; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Peer, Yves; Miwa, Makoto; Ananiadou, Sophia; Neves, Mariana; Pascual-Montano, Alberto; Ozgur, Arzucan; Radev, Dragomir R.; Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Kim, Jin-Dong; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics. volum 12.
    Academic article
  • Kocbek, Simon; Sætre, Rune; Stiglic, Gregor; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) AGRA: analysis of gene ranking algorithms. Bioinformatics. volum 27 (8).
    Academic article
  • Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Takagi, Toshihisa; Tsujii, Jun'ichi. (2011) BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC. Computational intelligence. volum 27 (4).
    Academic article
  • Rinaldi, Fabio; Kaljurand, Kaarel; Sætre, Rune. (2011) Terminological resources for text mining over biomedical scientific literature. Artificial Intelligence in Medicine. volum 52 (2).
    Academic article
  • Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle. (2011) Towards Ontology-Driven End-User Composition of Personalized Mobile Services. Lecture Notes in Computer Science (LNCS). volum 6716.
    Academic article
  • Miwa, Makoto; Sætre, Rune; Kim, Jin-Dong; Tsujii, Jun'ichi. (2010) Event Extraction with Complex Event Classification Using Rich Features. Journal of Bioinformatics and Computational Biology. volum 8 (1).
    Academic article
  • Ohta, Tomoko; Matsuzaki, Takuya; Okazaki, Naoaki; Miwa, Makoto; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2010) Medie and Info-pubmed: 2010 update. BMC Bioinformatics. volum 11 (5).
    Academic article
  • Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Yoshinobu, Kano; Tsujii, Jun'ichi. (2010) Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE/ACM Transactions on Computational Biology & Bioinformatics. volum 7.
    Academic article
  • Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2010) Improving the Inter-corpora Compatibility for Protein Annotations. Journal of Bioinformatics and Computational Biology. volum 8 (5).
    Academic article
  • Miwa, Makoto; Sætre, Rune; Miyao, Yusuke; Tsujii, Jun'ichi. (2009) Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers. International Journal of Medical Informatics. volum 78 (12).
    Academic article
  • Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2009) Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics. volum 10 (403).
    Academic article
  • Leitner, Florian; Krallinger, Martin; Rodriguez-Penagos, Carlos; Hakenberg, Jörg; Plake, Conrad; Kuo, Cheng-Ju; Hsu, CH; Tsai, Richard TH; Hung, HC; Lau, William W; Johnson, Calvin A; Sætre, Rune; Yoshida, Kazuhiro; Chen, Yan Hua; Kim, S; Shin, SY; Zhang, BT; Baumgartner, WA; Hunter, L; Haddow, B; Matthews, M; Wang, XL; Ruch, P; Ehrler, F; Ozgur, A; Erkan, G; Radev, DR; Krauthammer, M; Luong, T; Hoffmann, R; Sander, C; Valencia, A. (2008) Introducing meta-services for biomedical information extraction. Genome Biology. volum 9.
    Academic article
  • Miyao, Yusuke; Sagae, Kenji; Sætre, Rune; Matsuzaki, Takuya; Tsujii, Jun'ichi. (2008) Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction. Bioinformatics. volum 25 (3).
    Academic article
  • Sætre, Rune; Søvik, Harald; Amble, Tore; Tsuruoka, Yoshimasa. (2006) GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature. Lecture Notes in Computer Science (LNCS). volum 4070 (V).
    Academic article
  • Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Lecture Notes in Computer Science (LNCS). volum 3683.
    Academic article
  • Tveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. Proceedings - International Conference on Data Engineering.
    Academic article
  • Sætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic annotation of biomedical literature using Google. Lecture Notes in Computer Science (LNCS). volum 3482 (3).
    Academic article

Part of book/report

  • Marsi, Erwin; Sikdar, Utpal Kumar; Marco, Cristina; Barik, Biswanath; Sætre, Rune. (2017) NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. 11th International Workshop on Semantic Evaluations (SemEval-2017).
    Academic chapter/article/Conference paper
  • Bøhler, Henrik; Asla, Petter Fagerlund; Marsi, Erwin; Sætre, Rune. (2016) IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation. The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop..
    Academic chapter/article/Conference paper
  • Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak. (2016) Visual exploration and cohort identification of acute patient histories aggregated from heterogeneous sources. 2016 IEEE 32nd International Conference on Data Engineering Workshops.
    Academic chapter/article/Conference paper
  • Wang, Alf Inge; Zhu, Meng; Sætre, Rune. (2016) The Effect of Digitizing and Gamifying Quizzing in Classrooms. Proceedings of The 10th European Conference on Games Based Learning.
    Academic chapter/article/Conference paper
  • Stav, Erlend; Floch, Jacqueline; Khan, Mohammad Ullah; Sætre, Rune. (2013) Using Meta-modelling for Construction of an End-User Development Framework. End-User Development.
    Academic chapter/article/Conference paper
  • Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
    Academic chapter/article/Conference paper
  • Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael. (2011) End-user Composition of Web-based Services: The “Plus Alpha” Approach. Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011.
    Other
  • Sætre, Rune; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Stunes, Kamilla; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Webprot : online mining and annotation of biomedical literature using Google. Advanced computational methods for biocomputing and bioimaging.
    Academic chapter/article/Conference paper
  • Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Thommesen, Liv; Stunes, Kamilla; Lægreid, Astrid. (2005) gProt: Annotating protein interactions using Google and Gene Ontology. Lecture Notes in Computer Science.
    Academic chapter/article/Conference paper

Report

  • Sætre, Rune; Amble, Tore. (2006) GeneTUC: Natural Language Understanding in Medical Text. 2006. ISBN 82-471-7866-4. Doktoravhandlinger ved NTNU (59).
    Doctoral dissertation

PRODUKT

  • Sætre, Rune; Gulla, Jon Atle. (2012) FastlegeVakten. Endors.no, Norge. 2012.
    Software

Teaching

Courses

  • TDT4102 - Procedural and Object-Oriented Programming

Media

2021

  • Interview
    Steen Angell, Vilde Marie; Haugann, Håkon; Farshchian, Veronica; Sætre, Rune; Rye, Johan Fredrik; Reitan, Marit. (2021) Ujevn arbeidsmengde skaper frustrasjon blant studenter. Under Dusken, Nr 11, 107. årgang [Tidsskrift]. 2021-11-02.

2018

  • Popular scientific lecture
    Sætre, Rune; Mcmillan, Michael David. (2018) "Minority Report – Behind the scenes". BRAIN Talks . BRAIN NTNU; FRAM, Gløshaugen, Trondheim. 2018-10-09 - 2018-10-09.

2017

  • Poster
    Marsi, Erwin; Skidar, Utpal; Marco, Cristina; Barik, Biswanath; Sætre, Rune. (2017) NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. SemEval 2017 . ACL 2017; Vancouver. 2017-08-03 - 2017-08-04.

2016

  • Academic lecture
    Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak. (2016) Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources. HDMM @ ICDE 2016 . IEEE; Helsinki. 2016-05-16 - 2016-05-16.
  • Academic lecture
    Wang, Alf Inge; Zhu, Meng; Sætre, Rune. (2016) The Effect of Digitizing and Gamifying Quizzing in Classrooms. The 10th European Conference on Games Based Learning . The University of the West of Scotland; Paisley, Scotland. 2016-10-06 - 2016-10-07.

2014

  • Lecture
    Sætre, Rune; Nytrø, Øystein. (2014) PAsTAs: Fra store helsedata til forståelig informasjon. HelsIT 2014 . NTNU Videre; Trondheim. 2014-10-14 - 2014-10-15.

2013

  • Poster
    Berntsen, Gro Karine Rosvold; Nytrøe, Øystein; Sætre, Rune; Schrader, Per; Steinsbekk, Aslak. (2013) Giving patients a voice - Patient evaluation of PAtients TrAjectories – The PasTAs protocol. Data Quality workshop . Clinical Practice Research Database; London. 2013-09-06 - 2013-09-06.

2012

  • Interview
    Beltesbrekke, Ingvild Sættem; Sætre, Rune. (2012) Venteliste på Fastlegeordningen. P1: Her og Nå [Radio]. 2012-08-22.
  • Academic lecture
    Sætre, Rune; Nytrø, Øystein. (2012) HEXAnord2, Proposal for a pipeline for capturing, cleaning and reasoning about patient events. Last HexaNord Meeting . Danish Technical University, Department of Systems Biology; Copenhagen. 2012-09-12 - 2012-09-14.
  • Academic lecture
    Sætre, Rune; Nytrø, Øystein. (2012) «Keeping patients out of hospital» Capturing care trajectories. Clinical NLP Workshop 2012 . Computer and Systems Sciences @ Stockholm University & KTH; Stockholm. 2012-06-20 - 2012-06-21.

2011

  • Academic lecture
    Floch, Jacqueline; Stav, Erlend; Khan, Mohammad Ullah; Herrmann, Peter Michael; Sanders, Richard; Sætre, Rune. (2011) End-User Service Composition in Mobile Pervasive Environments. Third International Symposium, IS-EUD 2011 . End-User Development, EUD4Services; Torre Canne (BR). 2011-06-07 - 2011-06-07.
  • Poster
    Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS) . IEEE; Orlando, Florida. 2011-02-03 - 2011-02-05.
  • Academic lecture
    Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael. (2011) End-user Composition of Web-based Services: The “Plus Alpha” Approach. India-Norway Workshop on Web Concepts and Technologies 2011 . Norwegian University of Science and technology; Trondheim. 2011-10-03 - 2011-10-03.
  • Poster
    Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle. (2011) Towards Ontology-Driven Composition of Personalized Mobile Services by End-users. Natural Language Processing and Information Systems . NLDB; Alicante. 2011-06-28 - 2011-06-30.

2010

  • Academic lecture
    Miwa, Makoto; Miyao, Yusuke; Sætre, Rune; Tsujii, Jun'ichi. (2010) Entity-Focused Sentence Simplification for Relation Extraction. 23rd International Conference on Computational Linguistics . COLING; Beijing. 2010-08-23 - 2010-08-27.
  • Academic lecture
    Okazaki, Naoaki; Cho, Han-Cheol; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2010) The gene normalization and interactive systems of the University of Tokyo in the BioCreative III challenge. BioCreative III . NLM; Bethesda, Maryland. 2010-09-13 - 2010-09-15.

2009

  • Poster
    Sætre, Rune; Miwa, Makoto; Yoshida, Kazuhiro; Tsujii, Jun'ichi. (2009) From Protein-Protein Interaction to Molecular Event Extraction. Proceedings of Natural Language Processing in Biomedicine . ACL; Boulder, Colorado. 2009-06-04 - 2009-06-05.
  • Academic lecture
    Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Kano, Yoshinobu; Tsujii, Jun'ichi. (2009) AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge. BioCreative II.5 . CNIO; Madrid. 2009-10-07 - 2009-10-09.

2008

  • Poster
    Sætre, Rune; Kemper, Brian; Oda, Kanae; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) PathText/payao development: Text/pathway annotations. 9th International Conference on Systems Biology . ICSB, Gothenburg University; Gothenburg. 2008-08-22 - 2008-08-28.
  • Poster
    Sætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) Connecting Text Mining and Pathways using the PathText Resource. Language Resources and Evaluation Conference . LREC; Marrakech. 2008-05-26 - 2008-06-01.
  • Poster
    Sætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) PathText: Text Mining Tools Integrated with Biological Pathway. Genomes to Systems Conference 2008 Handbook . G2S; Manchester. 2008-03-17 - 2008-03-19.

2007

  • Academic lecture
    Sætre, Rune; Sagae, Kenji; Tsujii, Jun'ichi. (2007) Syntactic features for protein-protein interaction extraction. 2nd International Symposium on Languages in Biology and Medicine . LBM; Singapore. 2007-12-06 - 2007-12-07.
  • Academic lecture
    Sætre, Rune; Yoshida, Kazuhiro; Yakushiji, Akane; Miyao, Yusuke; Matsubayashi, Yuichiro; Ohta, Tomoko. (2007) AKANE System: Protein-Protein Interaction Pairs in BioCreAtIvE2 Challenge, PPI-IPS subtask. Second BioCreative Challenge Evaluation Workshop . CNIO; Madrid. 2007-04-23 - 2007-04-25.
  • Academic lecture
    Yan Hua, Chen; Ramampiaro, Heri; Lægreid, Astrid; Sætre, Rune. (2007) ProtIR prototype: abstract relevance for Protein-Protein Interaction in BioCreAtIvE2 Challenge, PPI-IAS subtask. BioCreAtIvE II . CNIO; Madrid. 2007-04-23 - 2007-04-25.

2006

  • Interview
    Sætre, Rune. (2006) Mitt Funn: Leseautomat. Om Doktorgradsarbeidet. A-magasinet, fredagstillegg til Aftenposten [Avis]. 2006-07-14.

2005

  • Popular scientific lecture
    Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES 2005 . Rajiv Khosla, Robert J. Howlett, Lakhmi C. Jain; Melbourne. 2005-09-14 - 2005-09-16.
  • Academic lecture
    Sætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic Annotation of Biomedical Literature Using Google. Data Mining and Bioinformatics Workshop (DMBIO 2005, In conjunction with ICCSA 2005) . The Institute of High Performance Computing (IHPC); Singapore. 2005-05-09 - 2005-05-12.
  • Academic lecture
    Tveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. International Workshop on Biomedical Data Engineering (BMDE 2005, In conjunction with ICDE 2005) . IEEE, Shunsuke UEMURA (NAIST); Tokyo. 2005-04-03 - 2005-04-04.

1997

  • Academic lecture
    Sandstå, Olav; Andersen, Thomas Maukon; Midtstraum, Roger; Sætre, Rune. (1997) Access time modeling of a MLR1 tape drive. Norsk informatikkonferanse . [Mangler data]; Voss.
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