2019

• Wang, Alf Inge; Sætre, Rune; Rydland, Terje; Dahl, Yngve. (2019) Evaluation of Interactive and Gamified Approaches for Teaching ICT Theory - A Study of PowerPoint, Sembly, and Kahoot!. Proceedings of the European Conference on Games Based Learning (ECGBL).
  Academic article

2017

• Marsi, Erwin; Sikdar, Utpal Kumar; Marco, Cristina; Barik, Biswanath; Sætre, Rune. (2017) NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. 11th International Workshop on Semantic Evaluations (SemEval-2017).
  Academic chapter/article/Conference paper

2016

• Bøhler, Henrik; Asla, Petter Fagerlund; Marsi, Erwin; Sætre, Rune. (2016) IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation. The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop..
  Academic chapter/article/Conference paper
• Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak. (2016) Visual exploration and cohort identification of acute patient histories aggregated from heterogeneous sources. 2016 IEEE 32nd International Conference on Data Engineering Workshops.
  Academic chapter/article/Conference paper
• Wang, Alf Inge; Zhu, Meng; Sætre, Rune. (2016) The Effect of Digitizing and Gamifying Quizzing in Classrooms. Proceedings of The 10th European Conference on Games Based Learning.
  Academic chapter/article/Conference paper

2015

• Dahl, Unni Alice; Johnsen, Roar; Sætre, Rune; Steinsbekk, Aslak. (2015) The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study. BMC Health Services Research. volum 15 (48).
  Academic article

2014

• Steinsbekk, Aslak; Berntsen, Gro Karine Rosvold; Schrader, Per; Sætre, Rune; Nytrø, Øystein. (2014) Patients Judgment of Their Trajectories. International Journal of Integrated Care (IJIC). volum 14.
  Abstract

2013

• Stav, Erlend; Floch, Jacqueline; Khan, Mohammad Ullah; Sætre, Rune. (2013) Using Meta-modelling for Construction of an End-User Development Framework. End-User Development.
  Academic chapter/article/Conference paper

2012

• Andersstuen, Runar; Engell, Trond Bøe; Sætre, Rune; Gambäck, Björn. (2012) A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
  Academic article
• Marcussen, Christian Jun; Eliassen, Lars Moland; Sætre, Rune; Gambäck, Björn. (2012) Context-Awareness and Real-Time Information in an Intelligent Smartphone Application. GI-Edition Lecture Notes in Informatics (LNI). volum 204.
  Academic article
• Sætre, Rune; Gulla, Jon Atle. (2012) FastlegeVakten. Endors.no, Norge. 2012.
  Software

2011

• Arighi, Cecilia N; Roberts, Phoebe M; Shashank, Agarwal; Bhattacharya, Sanmitra; Gianni, Cesareni; Chatr-aryamontri, Andrew; Clematide, Simon; Gaudet, Pascale; Giglio, Michelle Gwinn; Harrow, Ian; Huala, Eva; Krallinger, Martin; Leser, Ulf; Li, Donghui; Liu, Feifan; Lu, Zhlyong; Maltais, Lois J; Okazaki, Naoaki; Perfetto, Livia; Rinaldi, Fabio; Sætre, Rune; Salgado, David; Srinivasan, Padmini; Thomas, Philippe E; Toldo, Luca; Hirschman, Lynette; Wu, Cathy H.. (2011) BioCreative III interactive task: an overview. BMC Bioinformatics. volum 12.
  Academic article
• Floch, Jacqueline; Herrmann, Peter Michael; Khan, Mohammad Ullah; Sanders, Richard; Stav, Erlend; Sætre, Rune. (2011) End-User Service Composition in Mobile Pervasive Environments. Lecture Notes in Computer Science (LNCS). volum 6654.
  Abstract
• Kano, Yoshinobu; Björne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, Kevin Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E.; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Peer, Yves; Miwa, Makoto; Ananiadou, Sophia; Neves, Mariana; Pascual-Montano, Alberto; Ozgur, Arzucan; Radev, Dragomir R.; Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Kim, Jin-Dong; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics. volum 12.
  Academic article
• Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
  Academic chapter/article/Conference paper
• Kocbek, Simon; Sætre, Rune; Stiglic, Gregor; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) AGRA: analysis of gene ranking algorithms. Bioinformatics. volum 27 (8).
  Academic article
• Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Takagi, Toshihisa; Tsujii, Jun'ichi. (2011) BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC. Computational intelligence. volum 27 (4).
  Academic article
• Rinaldi, Fabio; Kaljurand, Kaarel; Sætre, Rune. (2011) Terminological resources for text mining over biomedical scientific literature. Artificial Intelligence in Medicine. volum 52 (2).
  Academic article
• Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael. (2011) End-user Composition of Web-based Services: The “Plus Alpha” Approach. Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011.
  Other
• Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle. (2011) Towards Ontology-Driven End-User Composition of Personalized Mobile Services. Lecture Notes in Computer Science (LNCS). volum 6716.
  Academic article

2010

• Miwa, Makoto; Sætre, Rune; Kim, Jin-Dong; Tsujii, Jun'ichi. (2010) Event Extraction with Complex Event Classification Using Rich Features. Journal of Bioinformatics and Computational Biology. volum 8 (1).
  Academic article
• Ohta, Tomoko; Matsuzaki, Takuya; Okazaki, Naoaki; Miwa, Makoto; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2010) Medie and Info-pubmed: 2010 update. BMC Bioinformatics. volum 11 (5).
  Academic article
• Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Yoshinobu, Kano; Tsujii, Jun'ichi. (2010) Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE/ACM Transactions on Computational Biology & Bioinformatics. volum 7.
  Academic article
• Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2010) Improving the Inter-corpora Compatibility for Protein Annotations. Journal of Bioinformatics and Computational Biology. volum 8 (5).
  Academic article

2009

• Miwa, Makoto; Sætre, Rune; Miyao, Yusuke; Tsujii, Jun'ichi. (2009) Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers. International Journal of Medical Informatics. volum 78 (12).
  Academic article
• Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi. (2009) Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics. volum 10 (403).
  Academic article

2008

• Leitner, Florian; Krallinger, Martin; Rodriguez-Penagos, Carlos; Hakenberg, Jörg; Plake, Conrad; Kuo, Cheng-Ju; Hsu, CH; Tsai, Richard TH; Hung, HC; Lau, William W; Johnson, Calvin A; Sætre, Rune; Yoshida, Kazuhiro; Chen, Yan Hua; Kim, S; Shin, SY; Zhang, BT; Baumgartner, WA; Hunter, L; Haddow, B; Matthews, M; Wang, XL; Ruch, P; Ehrler, F; Ozgur, A; Erkan, G; Radev, DR; Krauthammer, M; Luong, T; Hoffmann, R; Sander, C; Valencia, A. (2008) Introducing meta-services for biomedical information extraction. Genome Biology. volum 9.
  Academic article
• Miyao, Yusuke; Sagae, Kenji; Sætre, Rune; Matsuzaki, Takuya; Tsujii, Jun'ichi. (2008) Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction. Bioinformatics. volum 25 (3).
  Academic article

2007

• Sætre, Rune; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Stunes, Kamilla; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Webprot : online mining and annotation of biomedical literature using Google. Advanced computational methods for biocomputing and bioimaging.
  Academic chapter/article/Conference paper

2006

• Sætre, Rune; Amble, Tore. (2006) GeneTUC: Natural Language Understanding in Medical Text. 2006. ISBN 82-471-7866-4. Doktoravhandlinger ved NTNU (59).
  Doctoral dissertation
• Sætre, Rune; Søvik, Harald; Amble, Tore; Tsuruoka, Yoshimasa. (2006) GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature. Lecture Notes in Computer Science (LNCS). volum 4070 (V).
  Academic article

2005

• Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Lecture Notes in Computer Science (LNCS). volum 3683.
  Academic article
• Tveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. Proceedings - International Conference on Data Engineering.
  Academic article
• Sætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Thommesen, Liv; Stunes, Kamilla; Lægreid, Astrid. (2005) gProt: Annotating protein interactions using Google and Gene Ontology. Lecture Notes in Computer Science.
  Academic chapter/article/Conference paper
• Sætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic annotation of biomedical literature using Google. Lecture Notes in Computer Science (LNCS). volum 3482 (3).
  Academic article