Rune Sætre
+4773596101
IT-bygget, 104, Gløshaugen, Sem Sælands vei 9
About
Private page: http://www.idi.ntnu.no/~satre
- Kunstig Intelligens (AI). driver Buss-Orakelet for AtB i Trondheim
- Helsetjeneste-forskning, og språkforståelse i medisinske tekster
- FastlegeVakten varslingstjeneste
Group: Information Systems and Software Engineering (Campus photos)
Union Leader: Tekna NTNU and Akademikerne NTNU
Interests:
- Health informatics research: PAsTAs, and BioNLP
- Teaching several IT courses on BSc, MSc and PhD level
Publications:
- Cristin ( Index - Norwegian Universities Research Results )
- Google Scholar, DBLP, CiteSeer
Teaching last 10 years:
- Object-Oriented Programming with Python, C++ and Java
- Semantic Web (Examiner)
Competencies
Publications
2019
-
Wang, Alf Inge;
Sætre, Rune;
Rydland, Terje;
Dahl, Yngve.
(2019)
Evaluation of Interactive and Gamified Approaches for Teaching ICT Theory - A Study of PowerPoint, Sembly, and Kahoot!.
Proceedings of the European Conference on Games Based Learning (ECGBL).
Academic article
2017
-
Marsi, Erwin;
Sikdar, Utpal Kumar;
Marco, Cristina;
Barik, Biswanath;
Sætre, Rune.
(2017)
NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields.
11th International Workshop on Semantic Evaluations (SemEval-2017).
Academic chapter/article
2016
-
Bøhler, Henrik;
Asla, Petter Fagerlund;
Marsi, Erwin;
Sætre, Rune.
(2016)
IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation.
The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop..
Academic chapter/article
-
Sætre, Rune;
Nytrø, Øystein;
Nordbø, Stein Jakob;
Steinsbekk, Aslak.
(2016)
Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources.
2016 IEEE 32nd International Conference on Data Engineering Workshops.
Academic chapter/article
-
Wang, Alf Inge;
Zhu, Meng;
Sætre, Rune.
(2016)
The Effect of Digitizing and Gamifying Quizzing in Classrooms.
Proceedings of The 10th European Conference on Games Based Learning.
Academic chapter/article
2015
-
Dahl, Unni Alice;
Johnsen, Roar;
Sætre, Rune;
Steinsbekk, Aslak.
(2015)
The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study.
BMC Health Services Research.
volum 15 (48).
Academic article
2014
-
Steinsbekk, Aslak;
Berntsen, Gro Karine Rosvold;
Schrader, Per;
Sætre, Rune;
Nytrø, Øystein.
(2014)
Patients Judgment of Their Trajectories.
International Journal of Integrated Care (IJIC).
volum 14.
Summary/Abstract
2013
-
Stav, Erlend;
Floch, Jacqueline;
Khan, Mohammad Ullah;
Sætre, Rune.
(2013)
Using Meta-modelling for Construction of an End-User Development Framework.
End-User Development.
Academic chapter/article
2012
-
Andersstuen, Runar;
Engell, Trond Bøe;
Sætre, Rune;
Gambäck, Björn.
(2012)
A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices.
GI-Edition Lecture Notes in Informatics (LNI).
volum 204.
Academic article
-
Marcussen, Christian Jun;
Eliassen, Lars Moland;
Sætre, Rune;
Gambäck, Björn.
(2012)
Context-Awareness and Real-Time Information in an Intelligent Smartphone Application.
GI-Edition Lecture Notes in Informatics (LNI).
volum 204.
Academic article
-
Sætre, Rune;
Gulla, Jon Atle.
(2012)
FastlegeVakten.
Endors.no, Norge. 2012.
Software
2011
-
Arighi, Cecilia N;
Roberts, Phoebe M;
Shashank, Agarwal;
Bhattacharya, Sanmitra;
Gianni, Cesareni;
Chatr-aryamontri, Andrew;
Clematide, Simon;
Gaudet, Pascale;
Giglio, Michelle Gwinn;
Harrow, Ian;
Huala, Eva;
Krallinger, Martin;
Leser, Ulf;
Li, Donghui;
Liu, Feifan;
Lu, Zhlyong;
Maltais, Lois J;
Okazaki, Naoaki;
Perfetto, Livia;
Rinaldi, Fabio;
Sætre, Rune;
Salgado, David;
Srinivasan, Padmini;
Thomas, Philippe E;
Toldo, Luca;
Hirschman, Lynette;
Wu, Cathy H..
(2011)
BioCreative III interactive task: an overview.
BMC Bioinformatics.
volum 12.
Academic article
-
Floch, Jacqueline;
Herrmann, Peter Michael;
Khan, Mohammad Ullah;
Sanders, Richard;
Stav, Erlend;
Sætre, Rune.
(2011)
End-User Service Composition in Mobile Pervasive Environments.
Lecture Notes in Computer Science (LNCS).
volum 6654.
Summary/Abstract
-
Kano, Yoshinobu;
Björne, Jari;
Ginter, Filip;
Salakoski, Tapio;
Buyko, Ekaterina;
Hahn, Udo;
Cohen, Kevin Bretonnel;
Verspoor, Karin;
Roeder, Christophe;
Hunter, Lawrence E.;
Kilicoglu, Halil;
Bergler, Sabine;
Van Landeghem, Sofie;
Van Parys, Thomas;
Van de Peer, Yves;
Miwa, Makoto;
Ananiadou, Sophia;
Neves, Mariana;
Pascual-Montano, Alberto;
Ozgur, Arzucan;
Radev, Dragomir R.;
Riedel, Sebastian;
Sætre, Rune;
Chun, Hong-Woo;
Kim, Jin-Dong;
Pyysalo, Sampo;
Ohta, Tomoko;
Tsujii, Jun'ichi.
(2011)
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinformatics.
volum 12.
Academic article
-
Kocbek, Simon;
Sætre, Rune;
Gregor, Stiglic;
Kim, Jin-Dong;
Pernek, Igor;
Tsuruoka, Yoshimasa;
Kokol, Peter;
Ananiadou, Sophia;
Tsujii, Jun'ichi.
(2011)
Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications.
2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
Academic chapter/article
-
Kocbek, Simon;
Sætre, Rune;
Stiglic, Gregor;
Kim, Jin-Dong;
Pernek, Igor;
Tsuruoka, Yoshimasa;
Kokol, Peter;
Ananiadou, Sophia;
Tsujii, Jun'ichi.
(2011)
AGRA: analysis of gene ranking algorithms.
Bioinformatics.
volum 27 (8).
Academic article
-
Riedel, Sebastian;
Sætre, Rune;
Chun, Hong-Woo;
Takagi, Toshihisa;
Tsujii, Jun'ichi.
(2011)
BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC.
Computational intelligence.
volum 27 (4).
Academic article
-
Rinaldi, Fabio;
Kaljurand, Kaarel;
Sætre, Rune.
(2011)
Terminological resources for text mining over biomedical scientific literature.
Artificial Intelligence in Medicine.
volum 52 (2).
Academic article
-
Sætre, Rune;
Khan, Mohammad Ullah;
Herrmann, Peter Michael.
(2011)
End-user Composition of Web-based Services: The “Plus Alpha” Approach.
Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011.
Other
-
Sætre, Rune;
Khan, Mohammad Ullah;
Stav, Erlend;
Fernandez, Alfredo Perez;
Herrmann, Peter Michael;
Gulla, Jon Atle.
(2011)
Towards Ontology-Driven End-User Composition of Personalized Mobile Services.
Lecture Notes in Computer Science (LNCS).
volum 6716.
Academic article
2010
-
Miwa, Makoto;
Sætre, Rune;
Kim, Jin-Dong;
Tsujii, Jun'ichi.
(2010)
Event Extraction with Complex Event Classification Using Rich Features.
Journal of Bioinformatics and Computational Biology.
volum 8 (1).
Academic article
-
Ohta, Tomoko;
Matsuzaki, Takuya;
Okazaki, Naoaki;
Miwa, Makoto;
Sætre, Rune;
Pyysalo, Sampo;
Tsujii, Jun'ichi.
(2010)
Medie and Info-pubmed: 2010 update.
BMC Bioinformatics.
volum 11 (5).
Academic article
-
Sætre, Rune;
Yoshida, Kazuhiro;
Miwa, Makoto;
Matsuzaki, Takuya;
Yoshinobu, Kano;
Tsujii, Jun'ichi.
(2010)
Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System.
IEEE/ACM Transactions on Computational Biology & Bioinformatics.
volum 7.
Academic article
-
Wang, Yue;
Kim, Jin-Dong;
Sætre, Rune;
Pyysalo, Sampo;
Ohta, Tomoko;
Tsujii, Jun'ichi.
(2010)
Improving the Inter-corpora Compatibility for Protein Annotations.
Journal of Bioinformatics and Computational Biology.
volum 8 (5).
Academic article
2009
-
Miwa, Makoto;
Sætre, Rune;
Miyao, Yusuke;
Tsujii, Jun'ichi.
(2009)
Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers.
International Journal of Medical Informatics.
volum 78 (12).
Academic article
-
Wang, Yue;
Kim, Jin-Dong;
Sætre, Rune;
Pyysalo, Sampo;
Tsujii, Jun'ichi.
(2009)
Investigating heterogeneous protein annotations toward cross-corpora utilization.
BMC Bioinformatics.
volum 10 (403).
Academic article
2008
-
Leitner, Florian;
Krallinger, Martin;
Rodriguez-Penagos, Carlos;
Hakenberg, Jörg;
Plake, Conrad;
Kuo, Cheng-Ju;
Hsu, CH;
Tsai, Richard TH;
Hung, HC;
Lau, William W;
Johnson, Calvin A;
Sætre, Rune;
Yoshida, Kazuhiro;
Chen, Yan Hua;
Kim, S;
Shin, SY;
Zhang, BT;
Baumgartner, WA;
Hunter, L;
Haddow, B;
Matthews, M;
Wang, XL;
Ruch, P;
Ehrler, F;
Ozgur, A;
Erkan, G;
Radev, DR;
Krauthammer, M;
Luong, T;
Hoffmann, R;
Sander, C;
Valencia, A.
(2008)
Introducing meta-services for biomedical information extraction.
Genome Biology.
volum 9.
Academic article
-
Miyao, Yusuke;
Sagae, Kenji;
Sætre, Rune;
Matsuzaki, Takuya;
Tsujii, Jun'ichi.
(2008)
Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction.
Bioinformatics.
volum 25 (3).
Academic article
2007
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Advanced computational methods for biocomputing and bioimaging.
Academic chapter/article
2006
-
Sætre, Rune;
Amble, Tore.
(2006)
GeneTUC: Natural Language Understanding in Medical Text.
2006. ISBN 82-471-7866-4. Doktoravhandlinger ved NTNU (59).
PhD thesis
-
Sætre, Rune;
Søvik, Harald;
Amble, Tore;
Tsuruoka, Yoshimasa.
(2006)
GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature.
Lecture Notes in Computer Science (LNCS).
volum 4070 (V).
Academic article
2005
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Strømmen, Tonje;
Thommesen, Liv;
Stunes, Astrid Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating Protein Interactions Using Google and Gene Ontology.
Lecture Notes in Computer Science (LNCS).
volum 3683.
Academic article
-
Tveit, Amund;
Sætre, Rune;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.
Proceedings - International Conference on Data Engineering.
Academic article
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Lecture Notes in Computer Science.
Academic chapter/article
-
Sætre, Rune;
Tveit, Amund;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Semantic annotation of biomedical literature using Google.
Lecture Notes in Computer Science (LNCS).
volum 3482 (3).
Academic article
Scientific articles
-
Wang, Alf Inge;
Sætre, Rune;
Rydland, Terje;
Dahl, Yngve.
(2019)
Evaluation of Interactive and Gamified Approaches for Teaching ICT Theory - A Study of PowerPoint, Sembly, and Kahoot!.
Proceedings of the European Conference on Games Based Learning (ECGBL).
Academic article
-
Dahl, Unni Alice;
Johnsen, Roar;
Sætre, Rune;
Steinsbekk, Aslak.
(2015)
The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study.
BMC Health Services Research.
volum 15 (48).
Academic article
-
Andersstuen, Runar;
Engell, Trond Bøe;
Sætre, Rune;
Gambäck, Björn.
(2012)
A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices.
GI-Edition Lecture Notes in Informatics (LNI).
volum 204.
Academic article
-
Marcussen, Christian Jun;
Eliassen, Lars Moland;
Sætre, Rune;
Gambäck, Björn.
(2012)
Context-Awareness and Real-Time Information in an Intelligent Smartphone Application.
GI-Edition Lecture Notes in Informatics (LNI).
volum 204.
Academic article
-
Arighi, Cecilia N;
Roberts, Phoebe M;
Shashank, Agarwal;
Bhattacharya, Sanmitra;
Gianni, Cesareni;
Chatr-aryamontri, Andrew;
Clematide, Simon;
Gaudet, Pascale;
Giglio, Michelle Gwinn;
Harrow, Ian;
Huala, Eva;
Krallinger, Martin;
Leser, Ulf;
Li, Donghui;
Liu, Feifan;
Lu, Zhlyong;
Maltais, Lois J;
Okazaki, Naoaki;
Perfetto, Livia;
Rinaldi, Fabio;
Sætre, Rune;
Salgado, David;
Srinivasan, Padmini;
Thomas, Philippe E;
Toldo, Luca;
Hirschman, Lynette;
Wu, Cathy H..
(2011)
BioCreative III interactive task: an overview.
BMC Bioinformatics.
volum 12.
Academic article
-
Kano, Yoshinobu;
Björne, Jari;
Ginter, Filip;
Salakoski, Tapio;
Buyko, Ekaterina;
Hahn, Udo;
Cohen, Kevin Bretonnel;
Verspoor, Karin;
Roeder, Christophe;
Hunter, Lawrence E.;
Kilicoglu, Halil;
Bergler, Sabine;
Van Landeghem, Sofie;
Van Parys, Thomas;
Van de Peer, Yves;
Miwa, Makoto;
Ananiadou, Sophia;
Neves, Mariana;
Pascual-Montano, Alberto;
Ozgur, Arzucan;
Radev, Dragomir R.;
Riedel, Sebastian;
Sætre, Rune;
Chun, Hong-Woo;
Kim, Jin-Dong;
Pyysalo, Sampo;
Ohta, Tomoko;
Tsujii, Jun'ichi.
(2011)
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinformatics.
volum 12.
Academic article
-
Kocbek, Simon;
Sætre, Rune;
Stiglic, Gregor;
Kim, Jin-Dong;
Pernek, Igor;
Tsuruoka, Yoshimasa;
Kokol, Peter;
Ananiadou, Sophia;
Tsujii, Jun'ichi.
(2011)
AGRA: analysis of gene ranking algorithms.
Bioinformatics.
volum 27 (8).
Academic article
-
Riedel, Sebastian;
Sætre, Rune;
Chun, Hong-Woo;
Takagi, Toshihisa;
Tsujii, Jun'ichi.
(2011)
BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC.
Computational intelligence.
volum 27 (4).
Academic article
-
Rinaldi, Fabio;
Kaljurand, Kaarel;
Sætre, Rune.
(2011)
Terminological resources for text mining over biomedical scientific literature.
Artificial Intelligence in Medicine.
volum 52 (2).
Academic article
-
Sætre, Rune;
Khan, Mohammad Ullah;
Stav, Erlend;
Fernandez, Alfredo Perez;
Herrmann, Peter Michael;
Gulla, Jon Atle.
(2011)
Towards Ontology-Driven End-User Composition of Personalized Mobile Services.
Lecture Notes in Computer Science (LNCS).
volum 6716.
Academic article
-
Miwa, Makoto;
Sætre, Rune;
Kim, Jin-Dong;
Tsujii, Jun'ichi.
(2010)
Event Extraction with Complex Event Classification Using Rich Features.
Journal of Bioinformatics and Computational Biology.
volum 8 (1).
Academic article
-
Ohta, Tomoko;
Matsuzaki, Takuya;
Okazaki, Naoaki;
Miwa, Makoto;
Sætre, Rune;
Pyysalo, Sampo;
Tsujii, Jun'ichi.
(2010)
Medie and Info-pubmed: 2010 update.
BMC Bioinformatics.
volum 11 (5).
Academic article
-
Sætre, Rune;
Yoshida, Kazuhiro;
Miwa, Makoto;
Matsuzaki, Takuya;
Yoshinobu, Kano;
Tsujii, Jun'ichi.
(2010)
Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System.
IEEE/ACM Transactions on Computational Biology & Bioinformatics.
volum 7.
Academic article
-
Wang, Yue;
Kim, Jin-Dong;
Sætre, Rune;
Pyysalo, Sampo;
Ohta, Tomoko;
Tsujii, Jun'ichi.
(2010)
Improving the Inter-corpora Compatibility for Protein Annotations.
Journal of Bioinformatics and Computational Biology.
volum 8 (5).
Academic article
-
Miwa, Makoto;
Sætre, Rune;
Miyao, Yusuke;
Tsujii, Jun'ichi.
(2009)
Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers.
International Journal of Medical Informatics.
volum 78 (12).
Academic article
-
Wang, Yue;
Kim, Jin-Dong;
Sætre, Rune;
Pyysalo, Sampo;
Tsujii, Jun'ichi.
(2009)
Investigating heterogeneous protein annotations toward cross-corpora utilization.
BMC Bioinformatics.
volum 10 (403).
Academic article
-
Leitner, Florian;
Krallinger, Martin;
Rodriguez-Penagos, Carlos;
Hakenberg, Jörg;
Plake, Conrad;
Kuo, Cheng-Ju;
Hsu, CH;
Tsai, Richard TH;
Hung, HC;
Lau, William W;
Johnson, Calvin A;
Sætre, Rune;
Yoshida, Kazuhiro;
Chen, Yan Hua;
Kim, S;
Shin, SY;
Zhang, BT;
Baumgartner, WA;
Hunter, L;
Haddow, B;
Matthews, M;
Wang, XL;
Ruch, P;
Ehrler, F;
Ozgur, A;
Erkan, G;
Radev, DR;
Krauthammer, M;
Luong, T;
Hoffmann, R;
Sander, C;
Valencia, A.
(2008)
Introducing meta-services for biomedical information extraction.
Genome Biology.
volum 9.
Academic article
-
Miyao, Yusuke;
Sagae, Kenji;
Sætre, Rune;
Matsuzaki, Takuya;
Tsujii, Jun'ichi.
(2008)
Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction.
Bioinformatics.
volum 25 (3).
Academic article
-
Sætre, Rune;
Søvik, Harald;
Amble, Tore;
Tsuruoka, Yoshimasa.
(2006)
GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature.
Lecture Notes in Computer Science (LNCS).
volum 4070 (V).
Academic article
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Strømmen, Tonje;
Thommesen, Liv;
Stunes, Astrid Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating Protein Interactions Using Google and Gene Ontology.
Lecture Notes in Computer Science (LNCS).
volum 3683.
Academic article
-
Tveit, Amund;
Sætre, Rune;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.
Proceedings - International Conference on Data Engineering.
Academic article
-
Sætre, Rune;
Tveit, Amund;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Semantic annotation of biomedical literature using Google.
Lecture Notes in Computer Science (LNCS).
volum 3482 (3).
Academic article
Journal publications
-
Steinsbekk, Aslak;
Berntsen, Gro Karine Rosvold;
Schrader, Per;
Sætre, Rune;
Nytrø, Øystein.
(2014)
Patients Judgment of Their Trajectories.
International Journal of Integrated Care (IJIC).
volum 14.
Summary/Abstract
-
Floch, Jacqueline;
Herrmann, Peter Michael;
Khan, Mohammad Ullah;
Sanders, Richard;
Stav, Erlend;
Sætre, Rune.
(2011)
End-User Service Composition in Mobile Pervasive Environments.
Lecture Notes in Computer Science (LNCS).
volum 6654.
Summary/Abstract
Part of book/report
-
Marsi, Erwin;
Sikdar, Utpal Kumar;
Marco, Cristina;
Barik, Biswanath;
Sætre, Rune.
(2017)
NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields.
11th International Workshop on Semantic Evaluations (SemEval-2017).
Academic chapter/article
-
Bøhler, Henrik;
Asla, Petter Fagerlund;
Marsi, Erwin;
Sætre, Rune.
(2016)
IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation.
The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop..
Academic chapter/article
-
Sætre, Rune;
Nytrø, Øystein;
Nordbø, Stein Jakob;
Steinsbekk, Aslak.
(2016)
Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources.
2016 IEEE 32nd International Conference on Data Engineering Workshops.
Academic chapter/article
-
Wang, Alf Inge;
Zhu, Meng;
Sætre, Rune.
(2016)
The Effect of Digitizing and Gamifying Quizzing in Classrooms.
Proceedings of The 10th European Conference on Games Based Learning.
Academic chapter/article
-
Stav, Erlend;
Floch, Jacqueline;
Khan, Mohammad Ullah;
Sætre, Rune.
(2013)
Using Meta-modelling for Construction of an End-User Development Framework.
End-User Development.
Academic chapter/article
-
Kocbek, Simon;
Sætre, Rune;
Gregor, Stiglic;
Kim, Jin-Dong;
Pernek, Igor;
Tsuruoka, Yoshimasa;
Kokol, Peter;
Ananiadou, Sophia;
Tsujii, Jun'ichi.
(2011)
Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications.
2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
Academic chapter/article
-
Sætre, Rune;
Khan, Mohammad Ullah;
Herrmann, Peter Michael.
(2011)
End-user Composition of Web-based Services: The “Plus Alpha” Approach.
Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011.
Other
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Advanced computational methods for biocomputing and bioimaging.
Academic chapter/article
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Lecture Notes in Computer Science.
Academic chapter/article
Report
-
Sætre, Rune;
Amble, Tore.
(2006)
GeneTUC: Natural Language Understanding in Medical Text.
2006. ISBN 82-471-7866-4. Doktoravhandlinger ved NTNU (59).
PhD thesis
Teaching
Courses
Media
2021
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InterviewSteen Angell, Vilde Marie; Haugann, Håkon; Farshchian, Veronica; Sætre, Rune; Rye, Johan Fredrik; Reitan, Marit. (2021) Ujevn arbeidsmengde skaper frustrasjon blant studenter. Under Dusken, Nr 11, 107. årgang [Tidsskrift]. 2021-11-02.
2018
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Popular scientific lectureSætre, Rune; Mcmillan, Michael David. (2018) "Minority Report – Behind the scenes". BRAIN Talks . BRAIN NTNU; FRAM, Gløshaugen, Trondheim. 2018-10-09 - 2018-10-09.
2017
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PosterMarsi, Erwin; Skidar, Utpal; Marco, Cristina; Barik, Biswanath; Sætre, Rune. (2017) NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. SemEval 2017 . ACL 2017; Vancouver. 2017-08-03 - 2017-08-04.
2016
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Academic lectureSætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak. (2016) Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources. HDMM @ ICDE 2016 . IEEE; Helsinki. 2016-05-16 - 2016-05-16.
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Academic lectureWang, Alf Inge; Zhu, Meng; Sætre, Rune. (2016) The Effect of Digitizing and Gamifying Quizzing in Classrooms. The 10th European Conference on Games Based Learning . The University of the West of Scotland; Paisley, Scotland. 2016-10-06 - 2016-10-07.
2014
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LectureSætre, Rune; Nytrø, Øystein. (2014) PAsTAs: Fra store helsedata til forståelig informasjon. HelsIT 2014 . NTNU Videre; Trondheim. 2014-10-14 - 2014-10-15.
2013
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PosterBerntsen, Gro Karine Rosvold; Nytrøe, Øystein; Sætre, Rune; Schrader, Per; Steinsbekk, Aslak. (2013) Giving patients a voice - Patient evaluation of PAtients TrAjectories – The PasTAs protocol. Data Quality workshop . Clinical Practice Research Database; London. 2013-09-06 - 2013-09-06.
2012
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InterviewBeltesbrekke, Ingvild Sættem; Sætre, Rune. (2012) Venteliste på Fastlegeordningen. P1: Her og Nå [Radio]. 2012-08-22.
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Academic lectureSætre, Rune; Nytrø, Øystein. (2012) HEXAnord2, Proposal for a pipeline for capturing, cleaning and reasoning about patient events. Last HexaNord Meeting . Danish Technical University, Department of Systems Biology; Copenhagen. 2012-09-12 - 2012-09-14.
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Academic lectureSætre, Rune; Nytrø, Øystein. (2012) «Keeping patients out of hospital» Capturing care trajectories. Clinical NLP Workshop 2012 . Computer and Systems Sciences @ Stockholm University & KTH; Stockholm. 2012-06-20 - 2012-06-21.
2011
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Academic lectureFloch, Jacqueline; Stav, Erlend; Khan, Mohammad Ullah; Herrmann, Peter Michael; Sanders, Richard; Sætre, Rune. (2011) End-User Service Composition in Mobile Pervasive Environments. Third International Symposium, IS-EUD 2011 . End-User Development, EUD4Services; Torre Canne (BR). 2011-06-07 - 2011-06-07.
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PosterKocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi. (2011) Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS) . IEEE; Orlando, Florida. 2011-02-03 - 2011-02-05.
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Academic lectureSætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael. (2011) End-user Composition of Web-based Services: The “Plus Alpha” Approach. India-Norway Workshop on Web Concepts and Technologies 2011 . Norwegian University of Science and technology; Trondheim. 2011-10-03 - 2011-10-03.
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PosterSætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle. (2011) Towards Ontology-Driven Composition of Personalized Mobile Services by End-users. Natural Language Processing and Information Systems . NLDB; Alicante. 2011-06-28 - 2011-06-30.
2010
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Academic lectureMiwa, Makoto; Miyao, Yusuke; Sætre, Rune; Tsujii, Jun'ichi. (2010) Entity-Focused Sentence Simplification for Relation Extraction. 23rd International Conference on Computational Linguistics . COLING; Beijing. 2010-08-23 - 2010-08-27.
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Academic lectureOkazaki, Naoaki; Cho, Han-Cheol; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi. (2010) The gene normalization and interactive systems of the University of Tokyo in the BioCreative III challenge. BioCreative III . NLM; Bethesda, Maryland. 2010-09-13 - 2010-09-15.
2009
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PosterSætre, Rune; Miwa, Makoto; Yoshida, Kazuhiro; Tsujii, Jun'ichi. (2009) From Protein-Protein Interaction to Molecular Event Extraction. Proceedings of Natural Language Processing in Biomedicine . ACL; Boulder, Colorado. 2009-06-04 - 2009-06-05.
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Academic lectureSætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Kano, Yoshinobu; Tsujii, Jun'ichi. (2009) AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge. BioCreative II.5 . CNIO; Madrid. 2009-10-07 - 2009-10-09.
2008
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PosterSætre, Rune; Kemper, Brian; Oda, Kanae; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) PathText/payao development: Text/pathway annotations. 9th International Conference on Systems Biology . ICSB, Gothenburg University; Gothenburg. 2008-08-22 - 2008-08-28.
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PosterSætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) Connecting Text Mining and Pathways using the PathText Resource. Language Resources and Evaluation Conference . LREC; Marrakech. 2008-05-26 - 2008-06-01.
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PosterSætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi. (2008) PathText: Text Mining Tools Integrated with Biological Pathway. Genomes to Systems Conference 2008 Handbook . G2S; Manchester. 2008-03-17 - 2008-03-19.
2007
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Academic lectureSætre, Rune; Sagae, Kenji; Tsujii, Jun'ichi. (2007) Syntactic features for protein-protein interaction extraction. 2nd International Symposium on Languages in Biology and Medicine . LBM; Singapore. 2007-12-06 - 2007-12-07.
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Academic lectureSætre, Rune; Yoshida, Kazuhiro; Yakushiji, Akane; Miyao, Yusuke; Matsubayashi, Yuichiro; Ohta, Tomoko. (2007) AKANE System: Protein-Protein Interaction Pairs in BioCreAtIvE2 Challenge, PPI-IPS subtask. Second BioCreative Challenge Evaluation Workshop . CNIO; Madrid. 2007-04-23 - 2007-04-25.
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Academic lectureYan Hua, Chen; Ramampiaro, Heri; Lægreid, Astrid; Sætre, Rune. (2007) ProtIR prototype: abstract relevance for Protein-Protein Interaction in BioCreAtIvE2 Challenge, PPI-IAS subtask. BioCreAtIvE II . CNIO; Madrid. 2007-04-23 - 2007-04-25.
2006
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InterviewSætre, Rune. (2006) Mitt Funn: Leseautomat. Om Doktorgradsarbeidet. A-magasinet, fredagstillegg til Aftenposten [Avis]. 2006-07-14.
2005
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Popular scientific lectureSætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES 2005 . Rajiv Khosla, Robert J. Howlett, Lakhmi C. Jain; Melbourne. 2005-09-14 - 2005-09-16.
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Academic lectureSætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic Annotation of Biomedical Literature Using Google. Data Mining and Bioinformatics Workshop (DMBIO 2005, In conjunction with ICCSA 2005) . The Institute of High Performance Computing (IHPC); Singapore. 2005-05-09 - 2005-05-12.
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Academic lectureTveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. International Workshop on Biomedical Data Engineering (BMDE 2005, In conjunction with ICDE 2005) . IEEE, Shunsuke UEMURA (NAIST); Tokyo. 2005-04-03 - 2005-04-04.
1997
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Academic lectureSandstå, Olav; Andersen, Thomas Maukon; Midtstraum, Roger; Sætre, Rune. (1997) Access time modeling of a MLR1 tape drive. Norsk informatikkonferanse . [Mangler data]; Voss.