Journal publications

• Abudahab, Khalil; Prada, Joaquín; Yang, Zhirong; Bentley, Stephen; Croucher, Nicholas; Corander, Jukka; Anensen, David. (2019) PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics. vol. 5 (4).
• Lu, Yao; Corander, Jukka; Yang, Zhirong. (2019) Doubly Stochastic Neighbor Embedding on Spheres. Pattern Recognition Letters.
• Shao, Hui; Chen, Yuwei; Yang, Zhirong; Jiang, Changhui; Li, Wei; Wu, Haobo; Wen, Zhijie; Wang, Shaowei; Puttnon, Eetu; Hyyppä, Juha. (2019) A 91-Channel Hyperspectral LiDAR for Coal/Rock Classification. IEEE Geoscience and Remote Sensing Letters.
• Wang, Chao; Liu, Gonghui; Li, Jun; Zhang, Tao; Yang, Zhirong; Jiang, Hailong; Ren, Kai; Wu, Zhe. (2019) Non-uniform Temperature Distribution's Impact on Downhole Weight on Bit Measurement (DWOB) and the Novel Compensatory Method. Journal of Petroleum Science and Engineering.
• Chewapreecha, Claire; Holden, Matthew T.G.; Vehkala, Minna; Välimäki, Niko; Yang, Zhirong; Harris, Simon R.; Mather, Alison E.; Tuanyok, Apichai; De Smet, Birgit; Le Hello, Simon; Bizet, Chantal; Mayo, Mark; Wuthiekanun, Vanaporn; Limmathurotsakul, Direk; Phetsouvanh, Rattanaphone; Spratt, Brian G.; Corander, Jukka; Keim, Paul; Dougan, Gordon; Dance, David A.B.; Currie, Bart J.; Parkhill, Julian; Peacock, Sharon J.. (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature Microbiology. vol. 2:16263.
• Yang, Zhirong; Corander, Jukka; Oja, Erkki. (2016) Low-rank doubly stochastic matrix decomposition for cluster analysis. Journal of machine learning research. vol. 17.

Part of book/report

• Sedov, Denis; Yang, Zhirong. (2018) Word Embedding based on Low-Rank Doubly Stochastic Matrix Decomposition. Proceedings of the 25th International Conference on Neural Information Processing (ICONIP).