2023

• Cheng, Lei; Khalitov, Ruslan; Yu, Tong; Zhang, Jing; Yang, Zhirong. (2023) Classification of long sequential data using circular dilated convolutional neural networks. Neurocomputing. volum 518.
  Academic article
• Yang, Zhirong; Chen, Yuwei; Sedov, Denis; Kaski, Samuel; Corander, Jukka. (2023) Stochastic Cluster Embedding. Statistics and computing. volum 33 (12).
  Academic article

2022

• Khalitov, Ruslan; Yu, Tong; Cheng, Lei; Yang, Zhirong. (2022) Sparse factorization of square matrices with application to neural attention modeling. Neural Networks. volum 152.
  Academic article
• Lees, John A.; Tonkin-Hill, Gerry; Yang, Zhirong; Corander, Jukka. (2022) Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation. Philosophical Transactions of the Royal Society of London. Biological Sciences. volum 377 (1861).
  Academic article
• Lin, Chengchuang; Chen, Hanbiao; Huang, Jiesheng; Peng, Jing; Guo, Li; Yang, Zhirong; Du, Jiahua; Li, Shuangyin; Yin, Aihua; Zhao, Gansen. (2022) ChromosomeNet: A massive dataset enabling benchmarking and building basedlines of clinical chromosome classification. Computational biology and chemistry. volum 100.
  Academic article
• Yu, Tong; Khalitov, Ruslan; Cheng, Lei; Yang, Zhirong. (2022) Paramixer: Parameterizing Mixing Links in Sparse Factors Works Better than Dot-Product Self-Attention. Computer Vision and Pattern Recognition.
  Academic article
• Zhang, Jing; Geng, YangLi-ao; Wang, Wen; Sun, Wenju; Yang, Zhirong; Li, Qingyong. (2022) Distribution and gradient constrained embedding model for zero-shot learning with fewer seen samples. Knowledge-Based Systems. volum 251.
  Academic article

2021

• Lin, Chengchuang; Zhao, Gansen; Yin, Aihua; Yang, Zhirong; Li, Guo; Chen, Hanbiao; Zhao, Lei; Li, Shuangyin; Luo, Haoyu; Ma, Zhaohui. (2021) A novel chromosome cluster types identification method using ResNeXt WSL model. Medical Image Analysis. volum 69.
  Academic article
• Liu, Zhenhui; Dahl, Sondre Strande; Larsen, Erik Stensrud; Yang, Zhirong. (2021) A simple machine learning based framework for processing the inline inspection data of subsea pipelines. IOP Conference Series: Materials Science and Engineering. volum 1201 (012050).
  Academic article
• Ulvestad, Anita; Cao, Guangyu; Gustavsen, Kai; Vogt, Matthias; Rismyhr, Tore; Yang, Zhirong. (2021) Analysis of the effect of indoor environment on pupils’ health in one Norwegian school during COVID-19 pandemic. Healthy Buildings 2021 – Europe Proceedings of the 17th International Healthy Buildings Conference 21-23 June 2021.
  Academic chapter/article/Conference paper

2020

• Bordin, Chiara; Skjelbred, Hans Ivar; Kong, Jiehong; Yang, Zhirong. (2020) Machine Learning for Hydropower Scheduling: State of the Art and Future Research Directions. Procedia Computer Science. volum 176.
  Academic article
• Lin, Chengchuang; Zhao, Gansen; Yang, Zhirong; Yin, Aihua; Wang, Xinming; Guo, Li; Chen, Hanbiao; Ma, Zhaohui; Zhao, Lei; Luo, Haoyu; Wang, Tianxing; Ding, Bichao; Pang, Xiongwen; Chen, Qiren. (2020) CIR-Net: Automatic Classification of Human Chromosome Based on Inception-ResNet Architecture. IEEE/ACM Transactions on Computational Biology & Bioinformatics. volum 19 (3).
  Academic article
• Shao, Hui; Chen, Yuwei; Yang, Zhirong; Jiang, Changhui; Li, Wei; Wu, Haohao; Wang, Shaowei; Yang, Fan; Chen, Jie; Puttnon, Eetu; Hyyppä, Juha. (2020) Feasibility study on hyperspectral LiDAR for ancient Huizhou-style architecture preservation. Remote Sensing. volum 12:88 (1).
  Academic article
• Wang, Chao; Liu, Gonghui; Li, Jun; Zhang, Tao; Yang, Zhirong; Jiang, Hailong; Ren, Kai; Wu, Zhe. (2020) Non-uniform temperature distribution's impact on downhole weight on bit (DWOB) measurement and the novel compensatory method. Journal of Petroleum Science and Engineering. volum 184.
  Academic article
• Wang, Chao; Liu, Gonghui; Yang, Zhirong; Li, Jun; Zhang, Tao; Jiang, Hailong; Cao, Chenguang. (2020) Downhole working conditions analysis and drilling complications detection method based on deep learning. Journal of Natural Gas Science and Engineering. volum 81.
  Academic article
• Wang, Chao; Liu, Gonghui; Yang, Zhirong; Li, Jun; Zhang, Tao; Jiang, Hailong; He, Miao; Luo, Ming; Li, Wentuo. (2020) Downhole gas-kick transient simulation and detection with downhole dual-measurement points in water-based drilling fluid. Journal of Natural Gas Science and Engineering. volum 84.
  Academic article
• Xue, Kai; Ding, Yiyu; Yang, Zhirong; Nord, Natasa; Barillec, Mael Roger Albert; Mathisen, Hans Martin; Liu, Meng; Giske, Tor Emil; Stenstad, Liv-Inger; Cao, Guangyu. (2020) A Simple and Novel Method to Predict the Hospital Energy Use Based on Machine Learning: A Case Study in Norway. Communications in Computer and Information Science. volum 1332.
  Academic article

2019

• Abudahab, Khalil; Prada, Joaquín; Yang, Zhirong; Bentley, Stephen; Croucher, Nicholas; Corander, Jukka; Anensen, David. (2019) PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics. volum 5 (4).
  Academic article
• Lu, Yao; Corander, Jukka; Yang, Zhirong. (2019) Doubly Stochastic Neighbor Embedding on Spheres. Pattern Recognition Letters. volum 128.
  Academic article
• Lu, Yao; Yang, Zhirong; Kannala, Juho; Kaski, Samuel. (2019) Learning Image Relations with Contrast Association Networks. 2019 International Joint Conference on Neural Networks (IJCNN).
  Academic chapter/article/Conference paper
• Shao, Hui; Chen, Yuwei; Yang, Zhirong; Jiang, Changhui; Li, Wei; Wu, Haohao; Wen, Zhijie; Wang, Shaowei; Puttnon, Eetu; Hyyppä, Juha. (2019) A 91-Channel Hyperspectral LiDAR for Coal/Rock Classification. IEEE Geoscience and Remote Sensing Letters.
  Academic article

2018

• Sedov, Denis; Yang, Zhirong. (2018) Word Embedding based on Low-Rank Doubly Stochastic Matrix Decomposition. Proceedings of the 25th International Conference on Neural Information Processing (ICONIP).
  Academic chapter/article/Conference paper

2017

• Chewapreecha, Claire; Holden, Matthew T.G.; Vehkala, Minna; Välimäki, Niko; Yang, Zhirong; Harris, Simon R.; Mather, Alison E.; Tuanyok, Apichai; De Smet, Birgit; Le Hello, Simon; Bizet, Chantal; Mayo, Mark; Wuthiekanun, Vanaporn; Limmathurotsakul, Direk; Phetsouvanh, Rattanaphone; Spratt, Brian G.; Corander, Jukka; Keim, Paul; Dougan, Gordon; Dance, David A.B.; Currie, Bart J.; Parkhill, Julian; Peacock, Sharon J.. (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature Microbiology. volum 2:16263.
  Academic article

2016

• Yang, Zhirong; Corander, Jukka; Oja, Erkki. (2016) Low-rank doubly stochastic matrix decomposition for cluster analysis. Journal of machine learning research. volum 17.
  Academic article