Background and activities

About me

My main research focus is to use Systems Biology approaches to identify fundamental molecular mechanisms of innate immunity and cancers to develop actionable targets for the clinic. In addition, I use bioinformatics and computational biology approaches to analyze omics-based data.

My work in innate immunity pertains to the omics-based characterization of Toll-like receptor (TLR) signaling pathways. I am using proteomics and metabolomics approaches to study TLR signaling.

I work on the cancer biology of lung, gastric, head-and-neck and rare gynecological cancers. During my doctoral studies, I discovered CAMKK2 as a potential therapeutic target for gastric cancer and identified potential serum biomarkers for gastric cancer. I currently work on the omics characterization of rare gynecological cancers and am part of the GYNOCARE COST (gynocare.net) action to study these cancers.

Previously, I was involved in the draft map of the human proteome project which was published in Nature, Netpath- a resource on signaling pathways and proteome projects on body fluids and eye tissues.

Complete profile

ORCID

Qualifications

  • Ph.D. (Medical Biochemistry), Rajiv Gandhi University of Health Sciences, Bangalore, India, 2015
  • M.Sc. (Medical Biochemistry), Kasturba Medical College, Manipal University, India, 2006

Current and previous positions

  • Researcher, Centre of Molecular Inflammation Research (CEMIR), Department of Clinical and Molecular Medicine (IKOM), Norwegian University of Science and Technology (NTNU), Trondheim, Norway, May 2020- Present
  • Post Doctoral Fellow, Centre of Molecular Inflammation Research (CEMIR), Department of Clinical and Molecular Medicine (IKOM), Norwegian University of Science and Technology (NTNU), Trondheim, Norway, May 2018- May 2020
  • Assistant Professor (AP-II), Center for Systems Biology and Molecular Medicine,  Yenepoya University, Mangalore,  August 2017 - May 2018
  • Faculty Scientist, YU-IOB Center for Systems Biology and Molecular Medicine,  Yenepoya University, Mangalore,  June 2015 - July 2017
  • Ph.D. student, Institute of Bioinformatics (IOB), Bangalore, June 2008 - May 2015
  • Junior Research Fellow, Department of Clinical Proteomics and Molecular Medicine,  St. John’s Research Institute, Bangalore, October 2007 - May 2008
  • Project Assistant, Department of Biotechnology, Manipal Life Science Centre, Manipal,  March 2007 -June 2007

Research interests

Cancer Biology, Innate Immunity; Systems Biology

Awards

  • UGC Junior Research Fellowship, University Grants Commission, Government of India,  2008-2011
  • UGC Senior Research Fellowship, University Grants Commission, Government of India, 2011-2013

Supervision of Undergraduate and Postgraduate students

Master's students

Ph.D.
students

University/institution - Country
1 M.Sc.   NTNU, Trondheim, Norway

7 M.D.S

2 M.D.,

 8 M.Sc.

3

Yenepoya University, Mangalore, India

3 M.Sc.

 

Institute of Bioinformatics, Bangalore, India

 

Institutional responsibilities

  • 2016-2018 Member, Scientific Review Board, Yenepoya Research Center, Yenepoya University, Mangalore, India
  • 2015-2018 Additional in-charge of proteomics and metabolomics facility, Yenepoya University, Mangalore, India
  • 2017-2018 Teaching instructor and syllabus in-charge for the Post-Graduate Diploma in Multi-omics Technology, Yenepoya University. Created a syllabus for the course.
  • 2016-2018 Internal Ph.D. coursework instructor and syllabus in-charge for OMICS approaches including proteomics, metabolomics, and bioinformatics to Ph.D. students at Yenepoya University, India

Commissions of trust

  • Review Editor for Frontiers in Oncology and Frontiers in Genetics
  • Reviewer: Proteomics, Scientific Reports, Journal of Dermatological Science, Frontiers in Genetics, Frontiers in Molecular Biosciences, International Journal of Molecular Sciences, Cancers, Cancer Biomarkers

Professional memberships

  • Member, Society for Leukocyte Biology, 2019-present
  • Member, Digital Life Norway Research School, 2018-present
  • Life Member, Proteomics Society, India (PSI)
  • Life Member, Indian Society for Mass Spectrometry (LM807)
  • Member, Human Proteome Organization(HUPO), 2015-2019
  • Post Doc member, NORBIS (National research school in bioinformatics, biostatistics and systems biology), Norway,  2018-present
  • Member, Scientific Review Board, Yenepoya Research Center, Yenepoya University, Mangalore, 2016-2018

Publications

  • Pinto, S. M., Kim., H., Subbannayya, Y., Giambelluca, M. S., Bosl, K., Ryan, L., Sharma, A., Kandasamy, R. K. (2021). Comparative proteomic analysis reveals varying impact on immune responses in phorbol 12-myristate-13-acetate-mediated THP-1 monocyte-to-macrophage differentiation. Frontiers in Immunology. In Press.

  • Behera, S. K., Kasaragod, S., Karthikkeyan, G., Kotimoole, C. N., Raju, R., Prasad, T.S.K.*, and Subbannayya, Y. (2021). MS2Compound: A user friendly compound identification tool for LC-MS/MS based metabolomics data. OMICS: A Journal of Integrative Biology. In Press. (* Corresponding author)

  • Mohanty, V.*, Subbannayya,Y.*, Patil, S., Abdulla, R., Ganesh, M.S., Pal, A., Ray, J.G.,  Sidransky, D., Gowda, H., Prasad, T.S.K., Chatterjee, A. (2021). Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers. In Press. (* These authors contributed equally to the manuscript)

  • Tøndell, A., Subbannayya, Y., Wahl, S.G.F., Flatberg, A., Sørhaug, S., Børset, M., Haug, M. (2021) Analysis of intratumoral macrophages and T cells in non-small cell lung cancer (NSCLC) indicates a role for immune checkpoint and CD200-CD200R interactions. Cancers. In Press.

     

  • Mohanty, V.*, Subbannayya, Y.*, Shankargouda Patil S., Puttamallesh, V. N., Najar, M.A., Datta, K. K., Pinto S. M., Begum, S., Mohanty, N., Routray, S., Abdulla, R., Ray, J. G., Sidransky, D., Gowda, H., Prasad, T.S.K.,Chatterjee, A. (2021). Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of Cell Communication and Signaling. In Press. (* These authors contributed equally to the manuscript)

  • Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2021). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International Journal of Molecular Sciences. 22(1):E275. PubMed

  • Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2020). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. bioRxiv 2020.11.17.385096; doi: https://doi.org/10.1101/2020.11.17.385096 (Pre-print).

  • Karthikkeyan, G., Pervaje, R., Subbannayya, Y., Patil, A. H., Modi, P. K., Prasad T.S.K. (2020). Plant Omics: Metabolomics and Network Pharmacology of Liquorice, Indian Ayurvedic medicine Yashtimadhu. OMICS: A Journal of Integrative Biology. In Press.

  • Deolankar, S. C., Modi, P.K., Subbannayya, Y., Pervaje, R., and Prasad T.S.K. (2020). Molecular targets from traditional medicines for neuroprotection in human neurodegenerative diseases. OMICS: A Journal of Integrative Biology. 24(7):394-403.

  • Mohanty, V., Pinto, S. M., Subbannayya, Y., Najar, M.A, Murthy, K. B., Prasad, T. S. K., Murthy, K. R. (2020). Digging deeper for the eye proteome in vitreous substructures: A high-resolution proteome map of the normal human vitreous base. OMICS: A Journal of Integrative Biology. 24(6):379-389.

  • Pinto, S., Kim, H., Subbannayya, Y., Giambelluca, M., Bosl, K. and Kandasamy, R. K. (2020). Dose-dependent phorbol 12-myristate-13-acetate-1 mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. bioRxiv: 2020.2002.2027.968016 (Pre-print).

  • Subbannayya, Y., Pinto, S. M., Mohanty, V., Dagamajalu, S., Prasad, T. S. K., Murthy, K. R. (2020). What makes cornea immunologically unique and privileged? Mechanistic clues from a high-resolution proteomic landscape of the human cornea. OMICS: A Journal of Integrative Biology. 24(3):129-139. PubMed

  • D.A.B, Rex, Agarwal N., Prasad T. S. K., Kandasamy, R. K., Subbannayya, Y.*, Pinto, S. M.* (2020). A comprehensive pathway map of IL-18-mediated signalling. Journal of Cell Communication and Signaling. 14(2):257-266. (* Corresponding authors) PubMed

  • Deolankar, S. C., Patil, A. H., Koyangana, S. G., Subbannayya, Y., Prasad, T. S. K. and Modi, P. K. (2019). Dissecting Alzheimer’s disease molecular substrates by proteomics and discovery of novel post-translational modifications (PTMs). OMICS: A Journal of Integrative Biology. 23(7):350-361. PubMed

  • Kulkarni, S., Abdulla, R., Jose, M., Adyanthaya, S., Rex, D.A.B., Patil, A. H., Pinto, S.M., Subbannayya, Y.* (2019). Data-driven analysis identifies laminin-integrin-mediated signaling pathway as a determinant for cell differentiation in oral squamous cell carcinoma. Indian Journal of Pathology and Microbiology. 62 (4), 529-536. (* Corresponding author) PubMed

  • Subbannayya, Y., Pinto, S. M., Bösl, K., Keshava Prasad, T. S.,Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. International Journal of Molecular Sciences. 20(9). pii: E2086. PubMed

  • Subbannayya, Y., Pinto, S.M., Bösl, K., Prasad, T.S.K., Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. bioRxiv 568576; doi: https://doi.org/10.1101/568576 (Pre-print).

  • Mohanty, V., Subbannayya, Y., Najar, M. A., Pinto, S. M., Kasaragod, S., Karuppiah, H., Sreeramulu, B., Singh, K. K., Dalal, S., Manikkoth, S., Arunachalam, C., Prasad, T. S. K. and Murthy, K. R. (2019). Proteomics and visual health research: Proteome of the human sclera using high-resolution mass spectrometry. OMICS: A Journal of Integrative Biology. 23(2):98-110. PubMed

  • Bhat, S. A., Gurtoo. S., Deolankar, S. C., Fazili, K. M., Advani, J., Shetty, R., Prasad, T. S. K., Andrabi, S.*, Subbannayya, Y.* (2019). A network map of netrin receptor UNC5B-mediated signaling. Journal of Cell Communication and Signaling. 13(1):121-127. (* Corresponding authors). PubMed

  • Pinto, S. M., Subbannayya, Y., Prasad, T. S. K. (2019). Functional Proteomic Analysis to Characterize Signaling Crosstalk. Functional Proteomics: Methods and Protocols. X. Wang and M. Kuruc. New York, NY, Springer New York: 197-224. PubMed

  • Karthikkeyan, G.*, Subbannayya, Y.*, Najar, M. A., Mohanty, V., Pinto, S. M., Arunachalam, C., Prasad, T. S. K., and Murthy, K. R. (2018). Human optic nerve - an enhanced proteomic expression profile. OMICS: A Journal of Integrative Biology. 22(10):642-652. (* These authors contributed equally to the manuscript) PubMed

  • Subbannayya, Y. * , Karthikkeyan, G., Pinto S. M., Kapoor, S., Tyagi A., Pervaje, S. K., Pervaje R., Prasad T. S. K. * (2018) Global metabolite profiling and network pharmacology of Triphala identifies neuromodulatory receptor proteins as potential targets. Journal of Proteins & Proteomics. 9(2), 2018: 101-114. (* Corresponding authors).

  • Pinto, S. M., Verma, R, Advani, J., Chatterjee, O., Patil, A. H., Kapoor, S., Subbannayya, Y., Raja, R., Gandotra, S. and Prasad, T. S. K. (2018). Integrated multi-omic analysis of Mycobacterium tuberculosis H37Ra redefines virulence attributes. Frontiers in Microbiology. 9:1314 . PubMed

  • Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Prasad, T. S. K., Wani, M. R. and Pandey, A. (2018). A network map of IL-33 signaling pathway. Journal of Cell Communication and Signaling. 12(3):615-624 . PubMed

  • Abdulla, R.*, Adyanthaya., S., Kini, P., Mohanty, V., D'Souza, N. and Subbannayya, Y.* (2018). Clinico-pathological analysis of oral squamous cell carcinoma among the younger age group in coastal Karnataka, India- A retrospective study. Journal of Oral and Maxillofacial Pathology. 22(2): 180–187 . (* Corresponding authors).

  • Advani, J., Subbannayya, Y., Gowda H., Chatterjee, A. (2017). Bioinformatics advances to accelerate omics innovations and applications in the postgenomic era. OMICS: A Journal of Integrative Biology. 21(12):750.

  • Advani, J.*, Subbannayya, Y.*, Patel, K., Khan, A. A., Patil, A. H., Jain, A. P., Solanki, H. S., Radhakrishnan, A., Pinto, S. M., Sahasrabuddhe, N. A., Thomas, J. K., Mathur, P. P., Nair, B., Chang, X., Prasad, T. S. K., Sidransky, D., Gowda H., Chatterjee, A. (2017). Long term cigarette smoke exposure and changes in miRNA expression and proteome in non-small cell lung cancer. OMICS: A Journal of Integrative Biology. 21, 390-403. (* These authors contributed equally to the manuscript).

  • Murthy, K. R., Dammalli, M., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu A. K., Dey, G., Subbannayya, Y., Mishra, U.K., Nair, B., Gowda, H. and Prasad, T. S. K. (2016). A comprehensive proteomics analysis of the human iris tissue: Ready to embrace postgenomics precision medicine in ophthalmology? OMICS: A Journal of Integrative Biology. 9, 510-519.

  • Subbannayya, Y., Pinto, S. M., Gowda, H. and Prasad, T. S. K. (2016). Proteogenomics for understanding oncology: recent advances and future prospects. Expert Review of Proteomics. 13(3):297-308.

  • Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H .C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H. (2015). Identification of differentially expressed serum proteins in gastric adenocarcinoma.Journal of Proteomics. 127(Pt A):80-8.

  • Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. M., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. K. and Pandey, A. (2015). Proteomics of human aqueous humor. OMICS: A Journal of Integrative Biology. 19, 283-293.

  • Pinto, S. M., Nirujogi, R. S., Leal-Rojas, P., Patil, A. H., Manda, S. S., Subbannayya, Y., Roa, J. C., Chatterjee, A., Prasad, T. S. K and Pandey, A. (2015). Quantitative phosphoproteomic analysis of IL-33 mediated signaling. Proteomics. 15, 532-44.

  • Subbannayya, Y., Syed, N., Barbhuiya, M. A., Raja, R., Marimuthu, A., Sahasrabuddhe, N. A., Pinto, S. M., Manda, S. S., Renuse, S., Manju, H. C., Zameer, M. A. L., Sharma, J., Brait, M., Srikumar, K., Roa, J. C., Vijaya Kumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Pandey, A., Gowda, H. and Chatterjee, A. (2015). Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology and Therapy .6, 336-345.

  • Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A. (2014). A draft map of the human proteome. Nature. 509, 575-581.

  • Kelkar, D. S., Provost. E., Chaerkady, R., Muthusamy, B., Manda, S. S., Subbannayya, T., Selvan, L. D. N., Wang, C. H., Datta, K. K., Woo, S., Dwivedi, S. B., Renuse, S., Getnet, D., Huang, T. C., Kim, M. S., Pinto, S. M., Mitchell, C. J., Madugundu, A. K., Kumar, P., Sharma, J. Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Prasad, T. S. K., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, S. D. and Pandey, A. (2014). Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.Molecular and Cellular Proteomics. 13, 3184-98.

  • Murthy, K. R., Goel, R., Subbannayya, Y., Jacob, H. K. C., Murthy, P. R., Srikanth, S. M., Patil, A. H., Sharma, R., Sahasrabuddhe, N. A., Parashar, A., Nair, B. G., Krishna V., Prasad, T. S. K., Gowda, H. and Pandey, A. (2014). Proteomic analysis of human vitreous humor. Clinical Proteomics. 11, 29.

  • Subbannayya, Y., Anuja, K., Advani, J., Ojha, U. K., Nanjappa, V., George, B., Sonawane, A., Kumar, R. V., Ramaswamy, G., Pandey, A., Somani, B. L. and Raju, R. (2014). A network map of the Gastrin signaling pathway. Journal of Cell Communication and Signaling . 8(2):165-70.

  • Balakrishnan, L., Nirujogi, R. S., Ahmad, S., Bhattacharjee, M., Srikanth, S. M., Renuse, S., Kelkar, D. S., Subbannayya, Y., Raju, R., Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11,6.

  • Balakrishnan, L., Bhattacharjee, M., Ahmad, S., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients.Clinical Proteomics. 11,1.

  • Ramadasan-Nair, R., Gayathri, N., Mishra, S., Sunitha, B., Mythri, R., Nalini, A., Subbannayya, Y., Harsha, H. C., Kolthur-Seetharam, U. and Bharath, M. M. (2014). Mitochondrial alterations and oxidative stress in an acute transient mouse model of muscle degeneration: Implications for muscular dystrophy and related muscle pathologies.Journal of Biological Chemistry. 289, 485-509.

  • Kotigadde, S., Anusha G.R., Sandya V., Subbannayya, Y., Subbannayya, T., Nayak, S. (2012). Effect of water storage in silver container on the viability of enteric bacterial pathogens. The Journal of communicable diseases. 44(4):239-243.

  • Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L., Syed, N., Sekhar, N. R., Katte, T. V., Pinto, S. M., Srikanth, S. M., Kumar, P., Pawar, H., Kashyap, M. K., Maharudraiah, J., Ashktorab, H., Smoot, D. T., Ramaswamy, G., Kumar, R. V., Cheng, Y., Meltzer, S. J., Roa, J. C., Chaerkady, R., Prasad, T. S. K., Harsha, H. C., Chatterjee, A. and Pandey, A. (2012). SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics - Clinical Applications. 7, 355-366.

  • Kumar, G. S. S., Venugopal, A. K., Kashyap, M. K., Raju, R., Marimuthu, A., Palapetta, S. M., Subbannayya, Y., Goel, R., Chawla, A., Dikshit, J. B., Tata, P., Harsha, H. C., Maharudraiah, J., Ramachandra, Y. L., Satishchandra, P., Prasad, T. S. K., Pandey, A., Mahadevan, A. and Shankar, S. K. (2012). Gene expression profiling of tuberculous meningitis co-infected with HIV. Journal of Proteomics and Bioinformatics. 5, 235-244.

  • Prasad, T. S. K., Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D. N., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R. and Pandey, A. (2012). Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 11, 247-260.

  • Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srikanth, M. S., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database. 2011, bar032.

  • Marimuthu, A., O'Meally, R., Chaerkady, R., Subbannayya, Y., Nanjappa, V., Kumar, P., Kelkar, D., Pinto, S., Sharma, R., Renuse, S., Goel, R., Christopher, R., Delanghe, B., Cole, R. N., Harsha, H. C. and Pandey, A. (2011). A comprehensive map of the human urinary proteome. Journal of Proteome Research. 10, 2734-2743.

  • Marimuthu, A., Jacob, H. K. C., Jakharia, A., Subbannayya, Y., Keerthikumar, S., Kashyap, M. K., Goel, R., Balakrishnan, L., Dwivedi, S., Pathare, S., Dikshit, J. B., Maharudraiah, J., Singh, S., Kumar, G. S. S., Vijayakumar, M., Veerendra Kumar, K. V., Premalatha, C. S., Tata, P., Hariharan, R., Roa, J. C., Prasad, T. S. K., Chaerkady, R., Kumar, R. V. and Pandey, A.. (2011). Gene expression profiling of gastric cancer. Journal of Proteomics and Bioinformatics . 4, 74-82.

  • Kashyap, M .K., Harsha, H. C., Renuse, S., Pawar, H., Sahasrabuddhe, N. A., Kim, M. S., Marimuthu, A., Keerthikumar, S., Muthusamy, B., Kandasamy, K., Subbannayya, Y., Prasad, T. S. K., Mahmood, R., Chaerkady, R., Meltzer, S. J., Kumar, R. V., Rustgi, A. K. and Pandey, A. (2010). SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology and Therapy . 10, 796-810.

  • Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010). NetPath: A public resource of curated signal transduction pathways. Genome Biology .11, R3.

  • Nayak, S.B., Yashwanth, S, Pinto, S.M., Bhat, V.R., Mayya, S.S. (2005) Serum copper, ceruloplasmin, protein thiols and thiobarbituric acid reactive substance status in liver cancer associated with elevated levels of alpha-fetoprotein. Indian Journal of Physiology and Pharmacology. 49(3):341-44

Scientific, academic and artistic work

Displaying a selection of activities. See all publications in the database

2022

2021

2020

2019