Bjørn André Bredesen-Aa
About
Post-doctoral fellow in the Yaksi group.
PhD and Msc from the University of Bergen, Norway.
My current primary interests are in the development and application of analytical and machine learning algorithms for the study of connectomes and spatial transcriptomes, with particular focus on cortical and subcortical structure homologs in the zebrafish telencephalon.
I am also generally interested in the analysis of complex biological data through the lense of machine learning and wrote my PhD on the topic of modelling the sequences of Polycomb/Trithorax Response Elements, a class of epigenetic cis-regulatory elements in DNA.
Publications
2022
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2022)
Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3.
PLOS ONE.
volum 17 (9).
Academic article
2021
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2021)
MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics.
BMC Bioinformatics.
volum 22.
Academic article
2020
-
Bredesen, Bjørn André.
(2020)
Modelling the structure, function and evolution of Polycomb/Trithorax Response Elements.
2020.
Doctoral dissertation
2019
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2019)
DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements.
Nucleic Acids Research (NAR).
volum 47 (15).
Academic article
Journal publications
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2022)
Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3.
PLOS ONE.
volum 17 (9).
Academic article
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2021)
MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics.
BMC Bioinformatics.
volum 22.
Academic article
-
Bredesen, Bjørn André;
Rehmsmeier, Marc.
(2019)
DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements.
Nucleic Acids Research (NAR).
volum 47 (15).
Academic article
Report
-
Bredesen, Bjørn André.
(2020)
Modelling the structure, function and evolution of Polycomb/Trithorax Response Elements.
2020.
Doctoral dissertation