2022

• Chatterjee, Anamika; Swierstra, Tsjalling; Kuiper, Martin. (2022) Dealing with different conceptions of pollution in the Gene Regulation Knowledge Commons. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1865 (1).
• Kuiper, Martin; Bonello, Joseph; Fernández-Breis, Jesualdo Tomás; Bucher, Philipp; Futschik, Matthias E; Gaudet, Pascale; Kulakovskiy, Ivan V.; Licata, Luana; Logie, Colin; Lovering, Ruth C.; Makeev, Vsevolod J; Orchard, Sandra; Panni, Simona; Perfetto, Livia; Sant, David; Schulz, Stefan M.; Vercruysse, Steven; Zerbino, Daniel; Lægreid, Astrid. (2022) The gene regulation knowledge commons: the action area of GREEKC. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1865 (1).
• Vazquez Garcia, Miguel; Krallinger, Martin; Leitner, Florian; Kuiper, Martin; Valencia, Alfonso; Lægreid, Astrid. (2022) ExTRI: Extraction of transcription regulation interactions from literature. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1865 (1).
• Zobolas, John; Monteiro, Pedro T.; Kuiper, Martin; Flobak, Åsmund. (2022) Boolean function metrics can assist modelers to check and choose logical rules. Journal of Theoretical Biology. volum 538.

2021

• Carbon, Seth J.; Douglass, Eric; Good, Benjamin M; Unni, Deepak R; Harris, Nomi L.; Mungall, Christopher J.; Basu, Siddartha; Chisholm, Rex L.; Dodson, Robert J.; Hartline, Eric; Fey, Petra; Thomas, Paul D.; Albou, Laurent-Philippe; Ebert, Dustin; Kesling, Michael J; Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Mushayahama, Tremayne; LaBonte, Sandra A.; Siegele, Deborah A.; Antonazzo, Giulia; Attrill, Helen; Brown, Nick H.; Garapati, Phani; Marygold, Steven J.; Trovisco, Vitor; dos Santos, Gil; Falls, Kathleen; Tabone, Christopher; Zhou, Pinglei; Goodman, Joshua L.; Strelets, Victor B.; Thurmond, Jim; Garmiri, Penelope; Ishtiaq, Rizwan; Rodríguez-López, Milagros; Acencio, Marcio Luis; Kuiper, Martin; Lægreid, Astrid; Logie, Colin; Lovering, Ruth C.; Kramarz, Barbara; Saverimuttu, Shirin C.C.; Pinheiro, Sandra M.; Gunn, Heather; Su, Renzhi; Thurlow, Katherine E.; Chibucos, Marcus; Giglio, Michelle; Nadendla, Suvarna; Munro, James; Jackson, Rebecca; Duesbury, Margaret J.; del-Toro, Noemi; Meldal, Birgit H.M.; Paneerselvam, Kalpana; Perfetto, Livia; Porras, Pablo; Orchard, Sandra; Shrivastava, Anjali. (2021) The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Research (NAR).
• Gaudet, Pascale; Logie, Colin; Lovering, Ruth C.; Kuiper, Martin; Lægreid, Astrid; Thomas, Paul D.. (2021) Gene Ontology representation for transcription factor functions. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1864 (11-12).
• Juanes Cortés, Belén; Vera-Ramos, José Antonio; Lovering, Ruth C.; Gaudet, Pascale; Lægreid, Astrid; Logie, Colin; Schulz, Stefan; Roldán-García, María del Mar; Kuiper, Martin; Fernández-Breis, Jesualdo Tomás. (2021) Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1864 (11-12).
• Lovering, Ruth C.; Gaudet, Pascale; Acencio, Marcio Luis; Ignatchenko, Alex; Jolma, Arttu; Fornes, Oriol; Kuiper, Martin; Kulakovskiy, Ivan V.; Lægreid, Astrid; Martin, Maria J.; Logie, Colin. (2021) A GO catalogue of human DNA-binding transcription factors. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. volum 1864 (11-12).
• Touré, Vasundra; Flobak, Asmund; Niarakis, Anna; Vercruysse, Steven; Kuiper, Martin. (2021) The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling. Briefings in Bioinformatics. volum 22 (4).
• Touré, Vasundra; Zobolas, John; Kuiper, Martin; Vercruysse, Steven. (2021) CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator. Database: The Journal of Biological Databases and Curation.
• Tsirvouli, Eirini; Ashcroft, Felicity; Johansen, Berit; Kuiper, Martin. (2021) Logical and experimental modeling of cytokine and eicosanoid signaling in psoriatic keratinocytes. iScience. volum 24.

2020

• Comte, Blandine; Baumbach, Jan; Benis, Arriel; Basílio, José; Debeljak, Nataša; Flobak, Åsmund; Franken, Christian; Harel, Nissim; He, Feng; Kuiper, Martin; Juan Albino Méndez, Pérez; Pujos-Guillot, Estelle; Režen, Tadeja; Rozman, Damjana; Schmid, Johannes A; Scerri, Jeanesse; Tieri, Paolo; Van Steen, Kristel; Sona, Vasudevan; Watterson, Steven; Schmidt, Harald H H W. (2020) Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine. Network and Systems Medicine.
• De Mulder, Wim; Kuiper, Martin. (2020) A foundation for reference models for drug combinations with an application to Loewe’s reference model. BMC Bioinformatics. volum 21 (460).
• Niarakis, Anna; Kuiper, Martin; Ostaszewski, Marek; Malik Sheriff, Rahuman; Casals-Casas, Cristina; Thieffry, Denis; Freeman, Tom; Thomas, Paul; Touré, Vasundra; Noel, Vincent; Stoll, Gautier; Saez-Rodriguez, Julio; Naldi, Aurélien; Oshurko, Eugenia; Xenarios, Ioannis; Soliman, Sylvain; Chaouiya, Claudine; Helikar, Tomas; Calzone, Laurence. (2020) Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop. Briefings in Bioinformatics.
• Nydal, Rune; Bennett, Gaymon; Kuiper, Martin; Lægreid, Astrid. (2020) Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures. Medicine, Health care and Philosophy.
• Puig, Rafael Riudavets; Holmås, Stian; Mironov, Vladimir; Kuiper, Martin. (2020) Network Building with the Cytoscape BioGateway App Explained in Five Use Cases. Current Protocols in Bioinformatics. volum 72 (1).
• Touré, Vasundra; Vercruysse, Steven; Acencio, Marcio Luis; Lovering, Ruth C.; Orchard, Sandra; Bradley, Glyn; Casals-Casas, Cristina; Chaouiya, Claudine; del-Toro, Noemi; Flobak, Åsmund; Gaudet, Pascale; Hermjakob, Henning; Hoyt, Charles Tapley; Licata, Luana; Lægreid, Astrid; Mungall, Christopher; Niknejad, Anne; Panni, Simona; Perfetto, Livia; Porras, Pablo; Pratt, Dexter; Saez-Rodriguez, Julio; Thieffry, Denis; Thomas, Paul; Türei, Dénes; Kuiper, Martin. (2020) The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST). Bioinformatics.
• Tsirvouli, Eirini; Touré, Vasundra; Niederdorfer, Barbara; Vazquez Garcia, Miguel; Flobak, Åsmund; Kuiper, Martin. (2020) A middle-out modeling strategy to extend a colon cancer logical model improves drug synergy predictions in epithelial-derived cancer cell lines. Frontiers in Molecular Biosciences. volum 7:502573.
• Zobolas, John; Kuiper, Martin; Flobak, Åsmund. (2020) emba: R package for analysis and visualization of biomarkers in boolean model ensembles. Journal of Open Source Software (JOSS). volum 5 (53).
• Zobolas, John; Kuiper, Martin; Flobak, Åsmund. (2020) emba: R package for analysis and visualization of biomarkers in boolean model ensembles. Journal of Open Source Software (JOSS).
• Zobolas, John; Touré, Vasundra; Kuiper, Martin; Vercruysse, Steven. (2020) UniBioDicts: Unified access to biological dictionaries. Bioinformatics.

2019

• Carbon, Seth J.; Douglass, E; Dunn, N; Good, B; Harris, NL; Lewis, SE; Mungall, CJ; Basu, S; Chisholm, RL; Dodson, RJ; Hartline, E; Fey, P; Thomas, PD; Albou, LP; Ebert, D; Kesling, MJ; Mi, H; Muruganujan, A; Huang, X; Poudel, S; Mushayahama, T; Hu, JC; LaBonte, SA; Siegele, DA; Antonazzo, G; Attrill, H; Brown, NH; Fexova, S; Garapati, P; Jones, TEM; Marygold, SJ; Millburn, GH; Rey, AJ; Trovisco, V; Dos Santos, G; Emmert, DB; Falls, K; Zhou, P; Goodman, JL; Strelets, VB; Thurmond, J; Courtot, M; Osumi, DS; Parkinson, H; Roncaglia, P; Acencio, Marcio Luis; Kuiper, Martin; Lægreid, Astrid; Logie, C; Lovering, RC; Huntley, RP; Denny, P; Campbell, NH; Kramarz, B; Acquaah, V; Ahmad, SH; Chen, H; Rawson, JH; Chibucos, MC; Giglio, M; Nadendla, S; Tauber, R; Duesbury, MJ; Del, NT; Meldal, BHM; Perfetto, L; Porras, P; Orchard, S; Shrivastava, A; Xie, Z; Chang, HY; Finn, RD; Mitchell, AL; Rawlings, ND; Richardson, L; Sangrador-Vegas, A; Blake, JA; Christie, KR; Dolan, ME; Drabkin, HJ; Hill, DP; Ni, L; Sitnikov, D; Harris, MA; Oliver, SG; Rutherford, K; Wood, V; Hayles, J; Bahler, J; Lock, A; Bolton, ER; De Pons, J; Dwinell, M; Hayman, GT; Laulederkind, SJF; Shimoyama, M; Tutaj, M; Wang, SJ; D'Eustachio, P; Matthews, L; Balhoff, JP; Aleksander, SA; Binkley, G; Dunn, BL; Cherry, JM; Engel, SR; Gondwe, F; Karra, K; MacPherson, KA; Miyasato, SR; Nash, RS; Ng, PC; Sheppard, TK; Shrivatsav Vp, A; Simison, M; Skrzypek, MS; Weng, S; Wong, ED; Feuermann, M; Gaudet, P; Bakker, E; Berardini, TZ; Reiser, L; Subramaniam, S; Huala, E; Arighi, C; Auchincloss, A; Axelsen, K; Argoud, GP; Bateman, A; Bely, B; Blatter, MC; Boutet, E; Breuza, L; Bridge, A; Britto, R; Bye-A-Jee, H; Casals-Casas, C; Coudert, E; Estreicher, A; Famiglietti, L; Garmiri, P; Georghiou, G; Gos, A; Gruaz-Gumowski, N; Hatton-Ellis, E; Hinz, U; Hulo, C; Ignatchenko, A; Jungo, F; Keller, G; Laiho, K; Lemercier, P; Lieberherr, D; Lussi, Y; Mac-Dougall, A; Magrane, M; Martin, MJ; Masson, P; Natale, DA; Hyka, NN; Pedruzzi, I; Pichler, K; Poux, S; Rivoire, C; Rodriguez-Lopez, M; Sawford, T; Speretta, E; Shypitsyna, A; Stutz, A; Sundaram, S; Tognolli, M; Tyagi, N; Warner, K; Zaru, R; Wu, C; Chan, J; Cho, J; Gao, S; Grove, C; Harrison, MC; Howe, K; Lee, R; Mendel, J; Muller, HM; Raciti, D; Van Auken, K; Berriman, M; Stein, L; Sternberg, PW; Howe, D; Toro, S; Westerfield, Monte. (2019) The Gene Ontology Resource: 20 years and still GOing strong. Nucleic Acids Research (NAR). volum 47 (gky1055).
• Efstathiou, Sophia; Nydal, Rune; Lægreid, Astrid; Kuiper, Martin. (2019) Scientific knowledge in the age of computation: Explicated, computable and manageable?. Theoria. An international Journal of Theory, History and Foundations of Science. volum 34 (2).
• Holmås, Stian; Riudavets Puig, Rafael; Acencio, Marcio Luis; Mironov, Vladimir; Kuiper, Martin. (2019) The Cytoscape BioGateway App: explorative network building from an RDF store. Bioinformatics.
• Menden, Michael Patrick; Wang, Dennis; Mason, Mike J.; Szalai, Bence; Bulusu, Krishna C.; Guan, Yuanfang; Flobak, Åsmund; Kuiper, Martin; Lægreid, Astrid; Thommesen, Liv. (2019) Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature Communications. volum 10 (2674).
• Perfetto, Livia; Acencio, Marcio Luis; Bradley, Glyn; Cesareni, Gianni; del Toro, Noemi; Fazekas, David; Hermjakob, Henning; Korcsmaros, Tamas; Kuiper, Martin; Lægreid, Astrid; Lo Surdo, Prisca; Lovering, Ruth C.; Orchard, Sandra; Porras, Pablo; Thomas, Paul; Touré, Vasundra; Zobolas, John; Licata, Luana. (2019) CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination. Bioinformatics. volum 35 (19).
• Vera-Ramos, Jose Antonio; Juanes-Cortes, Belen; Fernández-Breis, Jesualdo Tomás; Gaudet, Pascale; Kuiper, Martin; Lægreid, Astrid; Logie, Colin; Roldan-Garcia, Maria del Mar; Schulz, Stefan. (2019) An example of multimodal biological knowledge representation. CEUR Workshop Proceedings. volum 2518.

2018

• Vercruysse, Steven; Kuiper, Martin. (2018) The VSM-pages: How to Easily Plant Complex Ideas into Computers.

2017

• Chawla, Konika; Kuiper, Martin. (2017) Discovering, analysing and taking care of knowledge. 2017. ISBN 978-82-326-2316-7.

2016

• Chawla, Konika; Kuiper, Martin. (2016) Genes2GO: A web application for querying gene sets for specific GO terms. Bioinformation. volum 12 (3).
• Tripathi, Sushil; Vercruysse, Steven; Chawla, Konika; Christie, Karen R.; Blake, Judith A; Huntley, Rachael P.; Orchard, Sandra; Hermjakob, Henning; Thommesen, Liv; Lægreid, Astrid; Kuiper, Martin. (2016) Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. Database: The Journal of Biological Databases and Curation.

2015

• Flobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid. (2015) Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PLoS Computational Biology. volum 11 (8).
• Lægreid, Astrid; Kuiper, Martin. (2015) Health and the information commons.
• Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. (2015) Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry. volum 54 (28).

2014

• Gautam, Vinay Kumar; Czeizler, Eugen; Haddow, Pauline; Kuiper, Martin. (2014) Design of a Minimal System for Self-replication of Rectangular Patterns of DNA Tiles. Lecture Notes in Computer Science (LNCS). volum 8890.
• Blondé, Ward; Antezana, Erick; Mironov, Vladimir; Schulz, Stefan; Kuiper, Martin; De baets, Bernard. (2014) Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Semantic Web Journal. volum 5 (2).
• Lægreid, Astrid; Kuiper, Martin. (2014) Å ta seg av kunnskap.
• Mironov, Vladimir; Kuiper, Martin; Ekseth, Ole Kristian. (2014) OrthAgogue: An agile tool for the rapid prediction of orthology relations. Bioinformatics. volum 30 (5).
• Venkatesan, Aravind; Tripathi, Sushil; Sanz de Galdeano, Alejandro; Blondé, Ward; Lægreid, Astrid; Mironov, Vladimir; Kuiper, Martin. (2014) Finding gene regulatory network candidates using the gene expression knowledge base. BMC Bioinformatics. volum 15 (1).

2013

• Antezana, Erick; Mironov, Vladimir; Kuiper, Martin. (2013) The emergence of Semantic Systems Biology. New Biotechnology. volum 30 (3).
• Chawla, Konika; Tripathi, Sushil; Thommesen, Liv; Lægreid, Astrid; Kuiper, Martin. (2013) TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors. Bioinformatics. volum 29 (19).
• Kuiper, Martin; Antezana, Erick; Mironov, Vladimir. (2013) Cell Cycle Ontology (CCO).
• Niehl, A; Zhang, Z.J.; Kuiper, Martin; Peck, SC; Heinlein, M. (2013) Label-Free Quantitative Proteomic Analysis of Systemic Responses to Local Wounding and Virus Infection in Arabidopsis thaliana. Journal of Proteome Research. volum 12 (6).
• Tripathi, Sushil; Christie, KR; Balakrishnan, Ravin; Huntley, R; Hill, DP; Thommesen, Liv; Blake, JA; Kuiper, Martin; Lægreid, Astrid. (2013) Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort. Database: The Journal of Biological Databases and Curation.
• Vercruysse, Steven; Kuiper, Martin. (2013) WordVis: JavaScript and Animation to Visualize the WordNet Relational Dictionary. Advances in Intelligent Systems and Computing. volum 179.

2012

• Kuiper, Martin; Venkatesan, Aravind; Antezana, Erick; Vercruysse, Steven; Mironov, Vladimir; Blondé, Ward. (2012) Putting Semantics in Systems Biology. META. volum 2012 (3).
• Mironov, Vladimir; Seethappan, Nirmala; Blondé, Ward; Antezana, Erick; Splendiani, Andrea; Kuiper, Martin. (2012) Gauging triple stores with actual biological data. BMC Bioinformatics. volum 13.
• Vercruysse, Steven; Kuiper, Martin. (2012) Jointly creating digital abstracts: dealing with synonymy and polysemy. BMC Research Notes. volum 5 (601).
• Vercruysse, Steven; Venkatesan, Aravind; Kuiper, Martin. (2012) OLSVis: an animated, interactive visual browser for bio-ontologies. BMC Bioinformatics. volum 13.

2011

• Beisvag, Vidar; Kauffmann, Audrey; Malone, James; Foy, Carole; Salit, Marc; Schimmel, H; Bongcam-Rudloff, Eric; Landegren, Ulf; Parkinson, Helen; Huber, Wolfgang; Brazma, Alvis; Sandvik, Arne Kristian; Kuiper, Martin. (2011) Contributions of the EMERALD project to assessing and improving microarray data quality. BioTechniques. volum 50 (1).
• Blondé, Ward; Mironov, Vladimir; Venkatesan, Aravind; Antezana, Erick; De baets, Bernard; Kuiper, Martin. (2011) Reasoning with bio-ontologies: using relational closure rules to enable practical querying. Bioinformatics. volum 27 (11).
• Chawla, Konika; Barah, Pankaj; Kuiper, Martin; Bones, Atle M.. (2011) Systems Biology: a Promising Tool to Study Abiotic Stress Responses. Omics and Plant Abiotic Stress Tolerance.
• Hu, QA; Hollunder, Jens; Niehl, A; Körner, Camilla J; Gereige, Dalya; Windels, David; Arnold, Andreas; Kuiper, Martin; Vazquez, Frank; Pooggin, M; Heinlein, M. (2011) Specific Impact of Tobamovirus Infection on the Arabidopsis Small RNA Profile. PLOS ONE. volum 6 (5).
• Mironov, Vladimir; Antezana, Erick; Egaña, Mikel; Blondé, Ward; De baets, Bernard; Kuiper, Martin; Stevens, Robert. (2011) Flexibility and utility of the cell cycle ontology. Applied Ontology. volum 6 (3).

2010

• Antezana, Erick; Venkatesan, Aravind; Mungall, Chris; Mironov, Vladimir; Kuiper, Martin. (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy. BMC Bioinformatics. volum 11.
• De Mulder, Wim; Kuiper, Martin; Boel, Rene. (2010) Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes. Journal of Integrative Bioinformatics (JIB). volum 7 (3).
• Egaña, Mikel; Stevens, Robert; Antezana, Erick; Fernández-Breis, Jesualdo Tomás; Kuiper, Martin; Mironov, Vladimir. (2010) Technologies and best practices for building bio-ontologies. Knowledge-based bioinformatics : from analysis to interpretation.
• Laukens, K; Hollunder, J; Thanh, HD; De Jaeger, G; Kuiper, Martin; Witters, E; Verschoren, A; Van Leemput, K. (2010) Flexible network reconstruction from relational databases with Cytoscape and CytoSQL. BMC Bioinformatics. volum 11.

2009

• Antezana, E; Kuiper, Martin; Mironov, Vladimir. (2009) Biological knowledge management: the emerging role of the Semantic Web technologies. Briefings in Bioinformatics. volum 10 (4).
• Antezana, Erick; Blondé, Ward; Egaña, Mikel; Rutherford, Alistair; Stevens, Robert; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin. (2009) BioGateway: A Semantic Systems Biology Tool for the Life Sciences. BMC Bioinformatics. volum 10 (S11).
• Antezana, Erick; Egaña, Mikel; Blondé, Ward; Illarramendi, Aitzol; Bilbao, Inaki; De baets, Bernard; Stevens, Robert; Mironov, Vladimir; Kuiper, Martin. (2009) The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process. Genome Biology. volum 10 (5).
• Naouar, Naira; Vandepoele, Klaas; Lammens, Tim; Casneuf, Tineke; Zeller, Georg; Van Hummelen, Paul; Weigel, Detlef; Ratsch, Gunnar; Inze, Dirk; Kuiper, Martin; De Veylder, Lieven; Vuylsteke, Marnik. (2009) Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal. volum 57 (1).
• Wabnik, K; Hvidsten, TR; Kedzierska, A; Van Leene, J; De Jaeger, G; Beemster, GTS; Komorowski, J; Kuiper, Martin. (2009) Gene expression trends and protein features effectively complement each other in gene function prediction. Bioinformatics. volum 25 (3).

2008

• Taylor, CF; Field, D; Sansone, SA; Aerts, J; Apweiler, R; Ashburner, M; Ball, CA; Binz, PA; Bogue, M; Booth, T; Brazma, A; Brinkman, RR; Clark, AM; Deutsch, EW; Fiehn, O; Fostel, J; Ghazal, P; Gibson, F; Gray, T; Grimes, G; Hancock, JM; Hardy, NW; Hermjakob, H; Julian, RK; Kane, M; Kettner, C; Kinsinger, C; Kolker, E; Kuiper, Marius Tremen Roelof; Le Novere, N; Leebens-Mack, J; Lewis, SE; Lord, P; Mallon, AM; Marthandan, N; Masuya, H; McNally, R; Mehrle, A; Morrison, N; Orchard, S; Quackenbush, J; Reecy, JM; Robertson, DG; Rocca-Serra, P; Rodriguez, H; Rosenfelder, H; Santoyo-Lopez, J; Scheuermann, RH; Schober, D; Smith, B; Snape, J; Stoeckert, CJ; Tipton, K; Sterk, P; Untergasser, A; Vandesompele, J; Wiemann, S. (2008) Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nature Biotechnology. volum 26 (8).
• Wabnik, Krysztof; Hvidsten, Torgeir Rhoden; Kedzierska, Anna; Van Leene, Jelle; De Jaeger, Geert; Beemster, Gerrit; Komorowski, Jan; Kuiper, Martin. (2008) Gene expression trends and protein features effectively complement each other in gene function prediction. Bioinformatics.