Eivind Almaas

About

My interest is in basic research in systems biology, focusing on complex biological networks, epidemiological spread, and cellular metabolism. In my group, we make use of both computational and experimental approaches. We also engage in applied research, specifically to identify alternatives to antibiotics through experimental bacteriophage evolution, and in the computational/ experimental analysis of interactions between yeast and nutrients in beer brewing. More information is available at my research group pages.

Publications

2023

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2023) Parameter inference for enzyme and temperature constrained genome-scale models. Scientific Reports. volum 13 (1).
Academic article

2022

Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra; Ghiachi, Payam; Beltran, Gemma; Almaas, Eivind; Mas, Albert; Warringer, Jonas; Gonzalez, Ramon; Morales, Pilar; Patil, Kiran R.. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology. volum 18 (10).
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics. volum 23.
Academic article
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
Academic article
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences. volum 9.
Academic article
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE. volum 17 (2).
Academic article
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S.; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Almaas, Eivind; Bjørkøy, Geir. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine. volum 184.
Academic article

2021

Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology. volum 22.
Academic literature review
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology. volum 12.
Academic article
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics. volum 12.
Academic article
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports. volum 11.
Academic article
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
Academic article
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering. volum 118.
Academic article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics. volum 22.
Academic article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics. volum 22 (1).
Errata
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok. nrk.no/ytring.
Feature article
Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger. Dagens næringsliv.
Feature article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases. volum 21 (1).
Errata

2020

Gysi, Deisy Morselli; de Miranda Fragoso, Tiago; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind; Nowick, Katja. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE. volum 15 (10).
Academic article
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics. volum 52 (11).
Academic article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi. Gemini.
Feature article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi. Aftenposten (morgenutg. : trykt utg.).
Feature article
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE. volum 15 (2).
Academic article
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE.
Academic article
Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience. volum 23 (9).
Academic article

2019

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal.
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics.
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics. volum 20.
Academic article
Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen; Johannessen, Bjarne; Skotheim, Rolf I.; Bjørkøy, Geir; Dijke, Peter Ten; Holien, Toril. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling. volum 17.
Academic article
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics. volum 20 (58).
Academic article

2018

Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics. volum 19 (392).
Academic article
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Academic article

2017

Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE. volum 12 (11).
Academic article
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports. volum 7 (1).
Academic article
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology. volum 13 (9).
Academic article

2016

Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela; Blomberg, Anders; Bretschneider, Till; Cascante, Marta; Collin, Olivier; de Atauri, Pedro; Depner, Cornelia; Dickinson, Robert; Dobrzynski, Maciej; Fleck, Christian; Garcia-Ojalvo, Jordi; Gonze, Didier; Hahn, Jens; Hess, Heide Marie. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications. volum 2.
Academic article
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications. volum 449.
Academic article
Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics. volum 135.
Academic article
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology. volum 82 (4).
Academic article
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology. volum 10 (39).
Academic article

2015

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi. Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.; Dräger, Andreas; Famili, Iman; Feist, Adam M.; Fleming, Ronan M.T.; Fong, Stephen S.; Hatzimanikatis, Vassily; Holder, Allen; Hucka, Michael; Hyduke, Daniel; Jamshidi, Neema; Lee, Sang Yup; Le Novère, Nicolas; Lerman, Joshua A.. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology. volum 11:831 (10).
Letter to the editor

2014

Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Competing in Synthetic biology.
Website (informational material)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Only two days away from the competition.
Website (informational material)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) We won the gold medal at the iGEM competiton.
Website (informational material)

2013

Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA). volum 87.
Academic article
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. volum 88.
Academic article
Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE. volum 8 (6).
Academic article

2012

Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism. Systems Microbiology - Current Topics and Applications.
Academic chapter/article/Conference paper
Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology. volum 6 (150).
Academic article
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network. Yersinia : Systems biology and control.
Academic chapter/article/Conference paper
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples. Microbial Systems Biology: Methods and Protocols.
Academic chapter/article/Conference paper

2010

Almaas, Eivind. (2010) Evolution of metabolic networks. Evolutionary genomics and systems biology.
Academic chapter/article/Conference paper
Almaas, Eivind. (2010) Sjimpansens gener - og våre. Gemini.
publications.INTERVJUSKRIFTL
Almaas, Eivind. (2010) SÅ lite skiller oss fra sjimpansene. VG : Verdens gang.
publications.INTERVJUSKRIFTL

2009

Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters. volum 103 (2).
Academic article
Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America. volum 106 (52).
Academic article

Journal publications

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2023) Parameter inference for enzyme and temperature constrained genome-scale models. Scientific Reports. volum 13 (1).
Academic article
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra; Ghiachi, Payam; Beltran, Gemma; Almaas, Eivind; Mas, Albert; Warringer, Jonas; Gonzalez, Ramon; Morales, Pilar; Patil, Kiran R.. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology. volum 18 (10).
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics. volum 23.
Academic article
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
Academic article
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences. volum 9.
Academic article
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE. volum 17 (2).
Academic article
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S.; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Almaas, Eivind; Bjørkøy, Geir. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine. volum 184.
Academic article
Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology. volum 22.
Academic literature review
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology. volum 12.
Academic article
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics. volum 12.
Academic article
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports. volum 11.
Academic article
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
Academic article
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering. volum 118.
Academic article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics. volum 22.
Academic article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics. volum 22 (1).
Errata
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok. nrk.no/ytring.
Feature article
Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger. Dagens næringsliv.
Feature article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases. volum 21 (1).
Errata
Gysi, Deisy Morselli; de Miranda Fragoso, Tiago; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind; Nowick, Katja. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE. volum 15 (10).
Academic article
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics. volum 52 (11).
Academic article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi. Gemini.
Feature article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi. Aftenposten (morgenutg. : trykt utg.).
Feature article
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE. volum 15 (2).
Academic article
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE.
Academic article
Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience. volum 23 (9).
Academic article
Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal.
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics.
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics. volum 20.
Academic article
Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen; Johannessen, Bjarne; Skotheim, Rolf I.; Bjørkøy, Geir; Dijke, Peter Ten; Holien, Toril. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling. volum 17.
Academic article
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics. volum 20 (58).
Academic article
Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics. volum 19 (392).
Academic article
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Academic article
Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE. volum 12 (11).
Academic article
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports. volum 7 (1).
Academic article
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology. volum 13 (9).
Academic article
Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela; Blomberg, Anders; Bretschneider, Till; Cascante, Marta; Collin, Olivier; de Atauri, Pedro; Depner, Cornelia; Dickinson, Robert; Dobrzynski, Maciej; Fleck, Christian; Garcia-Ojalvo, Jordi; Gonze, Didier; Hahn, Jens; Hess, Heide Marie. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications. volum 2.
Academic article
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications. volum 449.
Academic article
Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics. volum 135.
Academic article
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology. volum 82 (4).
Academic article
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology. volum 10 (39).
Academic article
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.; Dräger, Andreas; Famili, Iman; Feist, Adam M.; Fleming, Ronan M.T.; Fong, Stephen S.; Hatzimanikatis, Vassily; Holder, Allen; Hucka, Michael; Hyduke, Daniel; Jamshidi, Neema; Lee, Sang Yup; Le Novère, Nicolas; Lerman, Joshua A.. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology. volum 11:831 (10).
Letter to the editor
Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA). volum 87.
Academic article
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. volum 88.
Academic article
Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE. volum 8 (6).
Academic article
Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology. volum 6 (150).
Academic article
Almaas, Eivind. (2010) Sjimpansens gener - og våre. Gemini.
publications.INTERVJUSKRIFTL
Almaas, Eivind. (2010) SÅ lite skiller oss fra sjimpansene. VG : Verdens gang.
publications.INTERVJUSKRIFTL
Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters. volum 103 (2).
Academic article
Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America. volum 106 (52).
Academic article

Part of book/report

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi. Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism. Systems Microbiology - Current Topics and Applications.
Academic chapter/article/Conference paper
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network. Yersinia : Systems biology and control.
Academic chapter/article/Conference paper
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples. Microbial Systems Biology: Methods and Protocols.
Academic chapter/article/Conference paper
Almaas, Eivind. (2010) Evolution of metabolic networks. Evolutionary genomics and systems biology.
Academic chapter/article/Conference paper

INFORMASJONSMATR

Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Competing in Synthetic biology.
Website (informational material)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Only two days away from the competition.
Website (informational material)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) We won the gold medal at the iGEM competiton.
Website (informational material)

Teaching

TBT4165 - System Biology and Biological Networks
BT3801 - Tailored Biology: Potential, Limitations and Challenges for Humanity
BT8120 - Prokaryote Molecular Biology and Synthetic Biology
BT8118 - Metabolic Pathway Analysis

Media

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Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.

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Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.

2023

Lecture

Almaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop . MISC exchange program; Oslo. 2023-02-06 - 2023-02-10.

2022

Poster

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE ; Galway. 2022-09-28 - 2022-09-30.
Poster

Pettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) . Society for Biological Engineering; Galway. 2022-09-28 - 2022-09-30.
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference ; Trondheim. 2022-10-20 - 2022-10-21.
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference ; Galway. 2022-09-28 - 2022-09-30.

2021

Academic lecture

Almaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic . Programme for Applied Ethics, NTNU; Online. 2021-06-03 - 2021-06-04.
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU . Department of Biotechnology and Food Science (NTNU); NTNU Trondheim. 2021-04-28 - 2021-04-28.
Poster

Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021 . Aiche; Virtuellt. 2021-03-01 - 2021-03-02.

2020

Academic lecture

Almaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020 . Karolinska Institutet; Online video presentation. 2020-05-12 - 2020-05-12.
Poster

Hall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci . The Network Science Society; Online (Rome). 2020-09-21 - 2020-09-25.
Poster

Pettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020 . The Network Science Society; Online. 2020-09-14 - 2020-09-27.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference ; 2020-11-03 - 2020-11-03.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting ; 2020-01-23 - 2020-01-26.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting ; 2020-03-04 - 2020-03-05.
Academic lecture

Sulheim, Snorre; Fredrik A., Fossheim; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020 . NORBIS; Trondheim / online. 2020-11-03 - 2020-11-04.

2019

Academic lecture

Almaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture . Center for Complex Network Research, Northeastern University; Boston. 2019-11-15 - 2019-11-15.
Academic lecture

Almaas, Eivind. (2019) Genome to phenotypes through computational modeling. Guest Lecture . Prof. Bernhard Palsson; Dept. of Bioengineering, UC San Diego. 2019-09-11 - 2019-09-11.
Lecture

Almaas, Eivind. (2019) How to go on a sabbatical. IBT's weekly Department lunch . IBT; IBT's lunch room, NV Faculty, NTNU, Gløshaugen. 2019-08-21.
Academic lecture

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Dr. Ali Navid; Lawrence Livermore National Laboratory. 2019-09-24 - 2019-09-24.
Academic lecture

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Prof. Dietmar Kueltz; Dept. of Animal Science, UC Davis. 2019-09-23 - 2019-09-23.
Poster

Ertesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan; Le, Simone Balzer; Rau, E-Ming; Stafsnes, Marit Hallvardsdotter; Voigt, Andre; Bruheim, Per. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
Academic lecture

Hall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet . Norsk statistisk forening; Sola. 2019-06-15 - 2019-06-20.
Poster

Karlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019 ; 2019-01-24 - 2019-01-27.
Lecture

Schulz, Christian; Almaas, Eivind. (2019) Beer'omics - Kveik for Christmas. IBT department Seminar ; 2019-12-18 - 2019-12-18.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting ; 2019-10-25 - 2019-10-25.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-Scale modelling - No4. Bianual project meeting ; 2019-10-30 - 2019-10-30.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019 . NBS; 2019-01-24 - 2019-01-27.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting ; 2019-03-11 - 2019-03-11.
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling ; 2019-05-24 - 2019-05-28.
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool ; 2019-05-17 - 2019-05-21.
Poster

Schulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference ; 2019-09-05 - 2019-09-06.
Academic lecture

Simensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference . NORBIS; Oscarsborg Festning. 2019-09-30 - 2019-10-02.
Poster

Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-05.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; van Dissel, Dino; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
Lecture

Voigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019 . Norwegian Biochemical Society; Røros. 2019-01-25 - 2019-01-25.
Academic lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference . Fusion Conferences; Puerto Vallarta. 2019-06-02 - 2019-06-05.
Academic lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019 . SINTEF/NTNU; Trondheim. 2019-06-16 - 2019-09-19.
Poster

Zehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 ; 2019-09-05 - 2019-09-06.

2018

Academic lecture

Almaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology . ERASysAPP workshop combined with the DLN Volterra lecture; Trondheim. 2018-11-09 - 2018-11-09.
Academic lecture

Almaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018 . International Study Group for Systems Biology (ISGSB); Tromsø. 2018-09-24 - 2018-09-28.
Academic lecture

Almaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis ; Seattle. 2018-10-14 - 2018-10-16.
Poster

Hall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference . DLN; Bergen. 2018-03-20 - 2018-03-21.
Academic lecture

Hall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci . The Network Science Society; Paris. 2018-06-01 - 2018-06-15.
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks . The Network Science Society; Paris. 2018-06-11 - 2018-06-15.
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference . BioCat; Hurdal. 2018-06-04 - 2018-06-06.
Academic lecture

Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018 . NORBIS; Voss. 2018-10-17 - 2018-10-19.
Poster

Karlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018 . Senter for Digitalt Liv Norge; Bergen. 2018-03-20 - 2018-03-21.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting ; 2018-06-22 - 2018-06-22.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting ; 2018-05-30 - 2018-06-01.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference ; 2018-06-03 - 2018-06-06.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science ; 2018-05-16 - 2018-05-16.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting ; 2018-03-09 - 2018-03-09.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting ; Trondheim. 2018-08-13 - 2018-08-13.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018 ; Seattle, WA. 2018-10-14 - 2018-10-16.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting ; 2018-01-16 - 2018-01-17.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology ; Sienna. 2018-07-24 - 2018-07-30.
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris ; 2018-06-11 - 2018-06-15.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference ; 2018-03-20 - 2018-03-21.
Poster

Sulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science . Network Science society; Paris. 2018-06-11 - 2018-06-15.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018 . Centre for Digital Life Norway; Bergen. 2018-03-20 - 2018-03-21.
Poster

Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018) . Society for Biological Engineering; Seattle. 2018-10-14 - 2018-10-16.
Academic lecture

Voigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018 ; Paris. 2018-06-15 - 2018-06-15.
Lecture

Voigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018 . Elixir Norge; Drøbak. 2018-10-23 - 2018-10-23.

2017

Academic lecture

Hall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference . NORBIS; Tromsø. 2017-11-08 - 2017-11-10.
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06 - 2017-10-06.
Poster

Karlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS . NORBIS; Tromsø. 2017-10-08 - 2017-10-10.
Poster

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
Academic lecture

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) . International Society for Systems Biology; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
Poster

Schulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference ; 2017-11-08 - 2017-11-10.
Poster

Sulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017 . NORBIS; Hillesøy, Troms. 2017-11-08 - 2017-11-10.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
Academic lecture

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar . Institutt for bioteknologi og matvitenskap, NTNU; Trondheim. 2017-09-20 - 2017-09-20.
Academic lecture

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications . Senter for Digitalt Liv Norge; Bergen. 2017-09-07 - 2017-09-08.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) ; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products . FUSION conferences; Hotel Fiesta Americana Condesa, Cancun. 2017-03-05 - 2017-03-08.
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology . UiT; UiT, Tromsø. 2017-03-08 - 2017-03-10.
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference . Centre for Digital Life Norway; Hotel Bristol, Oslo. 2017-03-20 - 2017-03-21.
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project . SINTEF, RG Biotechnology; SINTEF, RG Biotechnology. 2017-09-19 - 2017-09-19.

2016

Poster

Heggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard; Zahlsen, Kolbjørn; Ellingsen, Trond Erling; Bruheim, Per; Almaas, Eivind; Wentzel, Alexander. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016 . SINTEF; Jægtvolden Fjordhotell, Inderøy. 2016-09-25 - 2016-09-28.

2014

Academic lecture

Almaas, Eivind. (2014) A story of biological networks. Forskningssamarbeid om EØS-Norge midler ; Riga. 2014-02-25 - 2014-02-25.
Popular scientific lecture

Almaas, Eivind. (2014) NTNU iGEM: Syntetisk biologi. Åpen dag 2014 . NTNU; Trondheim. 2014-04-29 - 2014-04-29.
Programme participation

Almaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia; Kjønstad, Ingrid Fadum. (2014) Syntetisk biologi. Schrödingers Katt [TV]. 2014-03-27.

2013

Interview

Almaas, Eivind. (2013) Hamburger fra laboratoriet. P1 Her og Nå [Radio]. 2013-08-05.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Næringsforeningen i Trondheim, Trondheim. 2013-09-27 - 2013-09-27.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Rektors stab, NTNU, Trondheim. 2013-09-26 - 2013-09-26.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; GK Rør AS, Trondheim. 2013-09-21 - 2013-09-21.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Atelier Ilsvika, Trondheim. 2013-09-20 - 2013-09-20.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Trondheim Kommune, Trondheim. 2013-09-19 - 2013-09-19.
Popular scientific lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; KIM senteret, Trondheim. 2013-09-18 - 2013-09-18.

2012

Popular scientific lecture

Almaas, Eivind. (2012) Bacterial Anti-Cancer Kamikaze explained. European iGEM Jamboree 2012 ; Vrije University, Amsterdam. 2012-10-05 - 2012-10-07.
Interview

Almaas, Eivind. (2012) Gjør det selv-biologene. A-magasinet [Avis]. 2012-05-25.

2011

Interview

Almaas, Eivind. (2011) Syntetisk biologi. Teknisk Ukeblad [Avis]. 2011-09-29.

2010

Programme participation

Almaas, Eivind. (2010) Fanget i nettet. Historien om hvordan alt henger sammen. http://www.nrk.no/p2_akademiet/ [Radio]. 2010-04-24.
Popular scientific lecture

Almaas, Eivind. (2010) Hva gjør oss smartere?. Foredrag på Universitetet i Stavanger ; Stavanger. 2010-01-21 - 2010-01-21.
Interview

Almaas, Eivind; Hjorthol, Lars Martin. (2010) Nettverksgener skiller mennesker og sjimpanser. null [Internett]. 2010-02-21.
Interview

Almaas, Eivind; Olstad, Lisa. (2010) Hvorfor ble vi mennesker?. null [Internett]. 2010-04-10.
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology ; Edinburgh. 2010-10-10 - 2010-10-16.
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.

Språkvelger

Eivind Almaas

Eivind Almaas

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