Eivind Almaas
Foto:
Kai Torgeir Dragland
About
My interest is in basic research in systems biology, focusing on complex biological networks, epidemiological spread, and cellular metabolism. In my group, we make use of both computational and experimental approaches. We also engage in applied research, specifically to identify alternatives to antibiotics through experimental bacteriophage evolution, and in the computational/ experimental analysis of interactions between yeast and nutrients in beer brewing. More information is available at my research group pages.
Publications
2024
-
Hall, Martina;
Skinderhaug, Marit K.;
Almaas, Eivind.
(2024)
Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study.
PLOS ONE
Academic article
-
Hall, Martina;
Skogholt, Anne Heidi;
Surakka, Ida;
Dalen, Håvard;
Almaas, Eivind.
(2024)
Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study.
Frontiers in Cardiovascular Medicine
Academic article
-
Ghiaci, Payam;
Jouhten, Paula;
Martyushenko, Nikolay;
Roca-Mesa, Helena;
Vázquez, Jennifer;
Konstantinidis, Dimitrios;
Stenberg, Simon;
Andrejev, Sergej;
Grkovska, Kristina;
Mas, Albert.
(2024)
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes.
Molecular Systems Biology
Academic article
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiaci, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2024)
Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980).
Molecular Systems Biology
Corrigendum
-
Almaas, Eivind;
Hall, Martina.
(2024)
Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits.
Norges teknisk-naturvitenskapelige universitet
Doctoral thesis
2023
-
Karlsen, Emil;
Gylseth, Marianne Cieslik;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Academic article
-
Pettersen, Jakob Peder;
Castillo, Sandra;
Jouhten, Paula;
Almaas, Eivind.
(2023)
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.
BMC Bioinformatics
Academic article
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports
Academic article
-
Fiedler, Alexander Willi;
Gundersen, Madeleine S.;
Vo, Toan Phuc;
Almaas, Eivind;
Vadstein, Olav;
Bakke, Ingrid.
(2023)
Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection.
Scientific Reports
Academic article
2022
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Academic article
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology
Academic article
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences
Academic article
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics
Academic article
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE
Academic article
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S..
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine
Academic article
2021
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics
Corrigendum
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports
Academic article
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering
Academic article
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology
Academic article
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics
Academic article
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Academic article
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology
Academic literature review
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics
Academic article
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Academic article
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases
Corrigendum
2020
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE
Academic article
-
Gysi, Deisy Morselli;
Fragoso, Tiago de Miranda;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE
Academic article
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Academic article
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics
Academic article
-
Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play
model for genome-scale metabolic models.
PLOS ONE
Academic article
2019
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling
Academic article
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics
Academic article
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics
Academic article
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics
Academic article
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Academic article
2018
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics
Academic article
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Academic article
-
Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio
Academic article
2017
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE
Academic article
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology
Academic article
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports
Academic article
2016
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics
Academic article
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications
Academic article
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications
Academic article
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology
Academic article
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens
: Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology
Academic article
2015
-
Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Popular science chapter
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology
Commentary
-
Drejer, Eivind Bøe;
Almaas, Eivind.
(2015)
Modelling and Analysis of Osmotic Stress in Escherichia Coli.
Norges teknisk-naturvitenskapelige universitet
Master thesis
2013
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE
Academic article
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Academic article
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Academic article
2012
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology
Academic article
-
Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Academic chapter
-
Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Academic chapter
-
Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Academic chapter
2010
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Academic chapter
2009
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Academic article
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters
Academic article
Journal publications
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology
Academic article
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Academic article
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics
Academic article
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics
Corrigendum
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications
Academic article
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications
Academic article
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology
Academic article
-
Karlsen, Emil;
Gylseth, Marianne Cieslik;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Academic article
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE
Academic article
-
Pettersen, Jakob Peder;
Castillo, Sandra;
Jouhten, Paula;
Almaas, Eivind.
(2023)
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.
BMC Bioinformatics
Academic article
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE
Academic article
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling
Academic article
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE
Academic article
-
Hall, Martina;
Skinderhaug, Marit K.;
Almaas, Eivind.
(2024)
Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study.
PLOS ONE
Academic article
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters
Academic article
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology
Commentary
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology
Academic article
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Academic article
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports
Academic article
-
Hall, Martina;
Skogholt, Anne Heidi;
Surakka, Ida;
Dalen, Håvard;
Almaas, Eivind.
(2024)
Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study.
Frontiers in Cardiovascular Medicine
Academic article
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering
Academic article
-
Gysi, Deisy Morselli;
Fragoso, Tiago de Miranda;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE
Academic article
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Academic article
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology
Academic article
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens
: Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology
Academic article
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports
Academic article
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics
Academic article
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics
Academic article
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Academic article
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology
Academic literature review
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics
Academic article
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology
Academic article
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Academic article
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences
Academic article
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics
Academic article
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Academic article
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases
Corrigendum
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports
Academic article
-
Fiedler, Alexander Willi;
Gundersen, Madeleine S.;
Vo, Toan Phuc;
Almaas, Eivind;
Vadstein, Olav;
Bakke, Ingrid.
(2023)
Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection.
Scientific Reports
Academic article
-
Ghiaci, Payam;
Jouhten, Paula;
Martyushenko, Nikolay;
Roca-Mesa, Helena;
Vázquez, Jennifer;
Konstantinidis, Dimitrios;
Stenberg, Simon;
Andrejev, Sergej;
Grkovska, Kristina;
Mas, Albert.
(2024)
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes.
Molecular Systems Biology
Academic article
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics
Academic article
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE
Academic article
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Academic article
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Academic article
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiaci, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2024)
Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980).
Molecular Systems Biology
Corrigendum
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics
Academic article
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S..
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine
Academic article
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Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio
Academic article
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Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play
model for genome-scale metabolic models.
PLOS ONE
Academic article
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics
Academic article
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics
Academic article
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Academic article
Part of book/report
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Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Academic chapter
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Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Popular science chapter
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Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Academic chapter
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Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Academic chapter
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Academic chapter
Student thesis or dissertation
-
Drejer, Eivind Bøe;
Almaas, Eivind.
(2015)
Modelling and Analysis of Osmotic Stress in Escherichia Coli.
Norges teknisk-naturvitenskapelige universitet
Master thesis
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Almaas, Eivind;
Hall, Martina.
(2024)
Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits.
Norges teknisk-naturvitenskapelige universitet
Doctoral thesis
Teaching
Outreach
Vaksinering av voksne er ikke nok
Vaksinering av voksne er ikke nok. Skal vi oppnå flokkimmunitet, er det helt nødvendig å vaksinere barn.
Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger
Store husholdninger gir mer smittespredning og bør prioriteres, særlig der smittetrykket er lavt. Det kan gi flokkimmunitet med færre vaksinedoser enn det dagens strategi vil kreve.
Derfor bør norske myndigheter endre sin teststrategi
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi
Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.
Korona - åpning av samfunnet
NRK Kveldsnytt, 7.5.2020, Innslag 1
Kan kloakken gi svar på hvor utbredt koronasmitten er i samfunnet?
NRK Dagsrevyen 21, 4.8.2020 @ 5min15sek
Systematisk spytt-testing for covid-19
NRK Dagsrevyen, 22.02.2021 kl. 19, Innslag 8
Bedre koronatesting med fokus på store husstander
Dagsnytt 18 debatt, 2.11.2020
Ny teststrategi mot korona
NRK Dagsnytt 18 debatt, 22.2.2021, Innslag 3
2023
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LectureAlmaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop
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Conference lectureFiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. (2023) Phage therapy has little influence on the water microbiota while still preventing infection in Atlantic salmon. 4th International Fish microbiota Workshop
2022
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Conference posterPettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022)
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Conference posterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference
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Conference posterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference
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Conference posterKarlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE
2021
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Feature articleVoigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
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Feature article
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Conference lectureAlmaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic
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Conference lectureKarlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU
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Conference posterSulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021
2020
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Feature articleOmholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi.
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Feature articleOmholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
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Conference lectureSchulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting
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Conference lectureSchulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting
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Conference lectureSchulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference
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Conference posterHall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci
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Conference lectureAlmaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020
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Conference posterPettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020
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Conference lectureSulheim, Snorre; A., Fossheim Fredrik; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020
2019
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Conference posterSulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; Dissel, Dino van; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019
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Conference lectureAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture
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Conference lecture
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Conference lectureAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture
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Conference lectureAlmaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture
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Conference lectureSimensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference
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Conference posterErtesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan; Le, Simone Balzer; Rau, E-Ming; Stafsnes, Marit Hallvardsdotter; Voigt, Andre. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019
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Conference posterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling
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Conference posterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool
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Conference lectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference
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Conference lectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019
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Lecture
-
Conference lecture
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Conference lectureSchulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting
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Conference lectureHall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet
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Lecture
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LectureVoigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019
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Conference posterSimensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019
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Conference posterKarlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019
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Conference posterZehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019
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Conference lectureSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting
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Conference posterSchulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference
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Conference lectureSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019
2018
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Conference lectureAlmaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting
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Conference posterSchulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology
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Conference posterSulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018
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Conference posterSulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science
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Conference posterSchulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018
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Conference lectureKarlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks
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Conference lectureKarlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference
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Conference posterSulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
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Conference lectureAlmaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis
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Conference lectureAlmaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology
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Conference lectureHall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci
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Conference posterHall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science
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LectureVoigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting
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Conference lectureSchulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting
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Conference lectureVoigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018
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Conference lectureKarlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018
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Conference posterKarlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018
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Conference posterSchulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference
2017
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Conference lectureHall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference
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Conference lectureSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications
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Conference posterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017)
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LectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products
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LectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology
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Conference posterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology
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Conference posterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems
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Conference lectureSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar
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Conference posterKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology
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Conference lectureKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017)
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Conference posterSulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017
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LectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference
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LectureWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project
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Conference posterKarlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS
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Conference posterSchulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference
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Conference lectureKarlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems
2016
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Conference posterHeggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard; Zahlsen, Kolbjørn; Ellingsen, Trond Erling; Bruheim, Per; Almaas, Eivind. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016
2014
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Conference lecture
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Contribution to radio or TVAlmaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia; Kjønstad, Ingrid Fadum. (2014) Syntetisk biologi.
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Lecture
2013
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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LectureAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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Interview
2012
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Lecture
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Interview
2011
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Interview
2010
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Interview
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Interview
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Interview
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Lecture
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Interview
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Conference posterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology
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Conference posterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology
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Contribution to radio or TV